Chuang Ma - Publications, H-index & Citations

Chuang Ma

College of Life Sciences

27H指数

122论文数

3.7K被引数

收录论文 52

发表时间

No-tillage shapes a Sinorhizobium-centered rhizosphere network in saline-alkali soybean fields 免耕塑造了盐碱大豆田中以中根瘤菌为中心的根际网络

Plant and Soil

IF4.1

2026-07-16

PREAI

Zhe Chen; Chuang Ma; Zhiqiang Hu; Zongling He; Jianchao Zhang; Shuyu Li; Lingfang Zhu; Xihui Shen; Baowei Bai

PanGraphRNA: An efficient and flexible bioinformatics platform for graph pangenome-based RNA-seq data analysis PanGraphRNA: 一种基于图泛基因组的高效灵活生物信息学平台，用于RNA-seq数据分析

Journal of Integrative Plant Biology

IF9.3

2026-03-19

OAAI

Yifan Bu; Zhixu Qiu; Wen Sun; Yishui Han; Yifan Liu; Jing Yang; Minggui Song; Zenglin Li; Songyu Liu; Yuzhou Zhang; Chuang Ma

Screening of Candidate Chemical Regulators for the m6A Writer MTA in Arabidopsis 拟南芥中m6A Writers MTA候选化学调节剂的筛选

CURRENT BIOINFORMATICS

IF2.9

2026-01-01

PREAI

Lei, Beilei; Jia, Chengchao; Tan, Cuixia; Ding, Pengjun; Li, Zenglin; Yang, Jing; Liu, Jiyuan; Wei, Xiaomin; Tao, Shiheng; Ma, Chuang

EasyAmplicon 2: Expanding PacBio and Nanopore Long Amplicon Sequencing Analysis Pipeline for Microbiome EasyAmplicon 2：扩展PacBio和Nanopore长片段扩增子测序分析流程以应用于微生物组研究

Advanced Science

IF14.1

2025-10-27

OAAI

Hao Luo; Defeng Bai; Zhihao Zhu; Salsabeel Yousuf; Haifei Yang; Jiani Xun; Meiyin Zeng; Yao Wang; Yunyun Gao; Kai Peng; Shanshan Xu; Yuanping Zhou; Tianyuan Zhang; Chuang Ma; Huiyu Hou; Xiulin Wan; Yang Zhou; Baolei Jia; Shi Huang; Renyou Gan; Tao Wen; Tong Chen; Xia Chen; Xiaofang Li; Yong-Xin Liu

iMeta Conference 2025: Creating high-impact international journals iMeta Conference 2025：创建具有高影响力的国际期刊

iMeta

IF33.2

2025-10-15

OAAI

Zhihao Zhu; Lin Zhang; Xiaofang Yao; Meiyin Zeng; Yao Wang; Hao Luo; Yuanping Zhou; Tianyuan Zhang; Jiani Xun; Defeng Bai; Haifei Yang; Shanshan Xu; Yang Zhou; Yunyun Gao; Jinbo Xu; Wei Han; ZiAng Shen; Bangzhou Zhang; Tengfei Ma; Xiu-Lin Wan; Chuang Ma; Fengjiao Hui; Hao Bai; Lijing Bai; Qing Bai; Qiangguo Bao; Guodong Cao; Peng Cao; Qiqi Cao; Hu Chen; Jiawen Chen; Jiaxu Chen; Lihua Chen; Tingting Chen; Yi Chen; Haipeng Cui; Shaoxing Dai; Xi-Jian Dai; Xiaofeng Dai; Yanqi Dang; Lei Deng; Yun Deng; Xia Ding; Binhua Dong; Ling Dong; Shujie Dou; Hongzhi Du; Zhencheng Fang; Xiaoxiao Feng; Min Fu; Yuan Gao; Wenping Gong; Xiang Guo; Wenjie Han; Zikai Hao; Zheng-Guo He; Haibo Hu; Haiming Hu; Xuefei Hu; Liang Huang; Xianya Huang; Xueting Huang; Haochen Hui; Dingjiacheng Jia; Aimin Jiang; Di Jiang; Kun Jiang; Dewei Jiang; Ying Jin; Kunyang Lai; Chun Li; Feng Li; Fuyong Li; Jing Li; Juan Li; Junling Li; Kui Li; Ling Li; Moli Li; Peiwu Li; Peng Li; Runze Li; Shengnan Li; Shujin Li; Wanting Li; Wenting Li; Xiaojing Li; Xinrui Li; Xuemeng Li; Qiqi Liang; Xiaoping Liao; Boyang Liu; Canzhao Liu; Chang Liu; Duanrui Liu; Furong Liu; Jianjun Liu; Jinyao Liu; Siqi Liu; Tianyang Liu; Wenjuan Liu; Yan Liu; Yang Liu; Yi Liu; Yuan Liu; Yunhuan Liu; Zhipeng Liu; Zhiyong Liu; Xin Lu; Xiao Luo; Guanju Ma; Jialin Meng; Yuanfa Meng; Runyu Miao; Linxuan Miao; Yawen Ni; Dongze Niu; Tingting Niu; Hongzhao Pan; Guoqiang Qin; Tiantian Qiu; Yueping Qiu; Hui Qu; Linghang Qu; Na Ren; Qiang Sun; Run Shang; Peize She; Xihui Shen; Bohan Shi; You Shu; Jiawei Song; Weibin Song; Qi Su; Qingzhu Sun; YuPing Sun; Zijin Sun; Bufu Tang; Deqin Tang; Hua Tang; Yongfu Tao; Teng Teng; Yanye Tu; Cheng Wang; Hui Wang; Yunhao Wang; Chunli Wang; Dingjie Wang; Gang Wang; Jin Wang; Kaiyi Wang; Mingbang Wang; Shan Wang; Shixiang Wang; Xiaojie Wang; Xing-Chang Wang; Yunzhe Wang; Jiale Wang; Zheng Wang; Weijie Wang; Yongjun Wei; Wei Xu; Fan Wu; Junling Wu; Shijuan Wu; Jian Xiao; Weihua Xiao; Yang Xiao; Xi Xiong; Xue Xiong; Feng Xu; Junyu Xu; Wen Xu; Jun Xu; Yao Xu; Jun Yan; Lutian Yao; Jia Yang; Lulu Yang; Xingzhen Yang; Naiyi Yin; Hua You; Min You; Ting Yu; Yongyao Yu; Renqiang Yu; Shuofeng Yuan; Chaoxiong Yue; Xiaoya Zeng; Andong Zha; Leilei Zhai; Chi Zhang; Dong Zhang; Hengguo Zhang; Heng Zhang; Hongyu Zhang; Jiahao Zhang; Jinyang Zhang; Lishan Zhang; Qi Zhang; Xiang Zhang; Xiangyu Zhang; Xuelei Zhang; Yancong Zhang; Yuan Zhang; Zhenyu Zhang; Jiwei Zhao; Jingxuan Zhao; Kai Zhao; Mingjuan Zhao; Yi Zhao; Yunxiang Zhao; Jixin Zhong; Ling Zhong; Xiangjian Zhong; Dan Zhou; Wei Zhou; Wen Zhou; Yiqian Zhou; Zhemin Zhou; Shiquan Zhu; Shuang-Jiang Liu; Suyin Feng; Shuangxia Jin; Chuanxing Xiao; Ziheng Wang; Peng Luo; Tong Chen; Gang Chen; Yong-Xin Liu

Machine learning-augmented m6A-Seq analysis without a reference genome 机器学习增强的m6A-Seq分析无需参考基因组

BRIEFINGS IN BIOINFORMATICS

IF7.7

2025-05-26

OAAI

Yang, Jing; Song, Minggui; Bu, Yifan; Zhao, Haonan; Liu, Chenghui; Zhang, Ting; Zhang, Chujun; Xu, Shutu; Ma, Chuang

deepTFBS: Improving within- and Cross-Species Prediction of Transcription Factor Binding Using Deep Multi-Task and Transfer Learning deepTFBS：使用深度多任务和迁移学习提升同种和跨种转录因子结合位点的预测

Advanced Science

IF14.1

2025-05-24

OAAI

Jingjing Zhai; Yuzhou Zhang; Chujun Zhang; Xiaotong Yin; Minggui Song; Chenglong Tang; Pengjun Ding; Zenglin Li; Chuang Ma

Nitrogen-fixing tree species enhance the positive effects of tree species richness on soil organic carbon sequestration by increasing fine root phosphorus loss

CATENA

IF5.7

2025-03-01

PREAI

Liu, Yanchun; Li, Qinglin; Tian, Huimin; Liu, Shirong; Ma, Chuang; Wang, Menghan; Wang, Hui; Ming, Angang

Quantifying the impact of factors on soil available arsenic using machine learning

ENVIRONMENTAL POLLUTION

IF7.3

2024-10-01

PREAI

Han, Zhaoyang; Yang, Jun; Yan, Yunxian; Zhao, Chen; Wan, Xiaoming; Ma, Chuang; Shi, Huading

Editorial: Applications of artificial intelligence, machine learning, and deep learning in plant breeding 社论: 人工智能，机器学习和深度学习在植物育种中的应用

FRONTIERS IN PLANT SCIENCE

IF4.8

2024-05-22

OAAI

Eftekhari, Maliheh; Ma, Chuang; Orlov, Yuriy L.

The Microbiome Protocols eBook initiative: Building a bridge to microbiome research 微生物组协议电子书倡议: 建立微生物组研究的桥梁

IMETA

IF33.2

2024-03-19

OAAI

Gao, Yunyun; Peng, Kai; Bai, Defeng; Bai, Xiao-Ye; Bi, Yujing; Chen, Anqi; Chen, Baodong; Chen, Feng; Chen, Juan; Chen, Lei; Chen, Tong; Chen, Wei; Cheng, Xu; Cheng, Yanfen; Cui, Jie; Dai, Jingjing; Dai, Junbiao; Dai, Zhaolai; Deng, Ye; Deng, Yi-Zhen; Ding, Wei; Fang, Zhencheng; Fu, Wei; Gao, Hanbing; Gu, Shaohua; Guo, Xue; Guo, Xuguang; Han, Dongfei; He, Lele; He, Yatao; Hou, Hui-Yu; Jia, Baolei; Jia, Gengjie; Jiao, Shuo; Jin, Wei; Ju, Feng; Ju, Zhicheng; Kong, Siyuan; Lan, Canhui; Li, Bing; Li, Da; Li, Diyan; Li, Jingdi; Li, Meng; Li, Qi; Li, Qiang; Li, Wen-Jun; Li, Xiaofang; Li, Xuemeng; Li, Yahui; Li, You-Gui; Liang, Zhibin; Ling, Ning; Liu, Fufeng; Liu, Qing; Liu, Shuang-Jiang; Lu, Hongye; Lu, Qi; Luo, Guangwe; Luo, Hao; Luo, Yuheng; Lyu, Hujie; Ma, Chuang; Ma, Liyuan; Ma, Tengfei; Ni, Jinfeng; Pang, Ziqin; Qiang, Xiaojing; Qin, Yuan; Qu, Qingyue; Ran, Chao; Ren, Shuqiang; Shang, Haitao; Song, Luyang; Sun, Linyang; Sun, Weimin; Tang, Liping; Tian, Jian; Wang, Kai; Wang, Mengzhi; Wang, Ming-Ke; Wang, Tao; Wang, Xiao-Yan; Wang, Yao; Wang, Yiwen; Wang, Youshan; Wei, Hailei; Wei, Hong; Wei, Zhong; Wen, Tao; Wu, Jiqiu; Wu, Linhuan; Wu, Linkun; Xi, Jiao; Xie, Bo; Xu, Guofang; Xu, Jun; Xu, Shanshan; Xue, Qing; Yan, Liping; Yang, Haifei; Yang, Jun; Yang, Junbo; Yang, Ruifu; Yang, Yalin; Yang, Ying-Jie; Yao, Xiaofang; Yao, Yanpo; Yousuf, Salsabeel; Yu, Ke; Yuan, Zhengrong; Yuan, Zhilin; Zhang, Dong; Zhang, Tianyuan; Zhang, Weipeng; Zhang, Yunzeng; Zhang, Zhaonan; Zhang, Zhen; Zhang, Zhi-Feng; Zhao, Shengguo; Zhao, Wei; Zheng, Maosheng; Zheng, Ziqiang; Zhou, Xin; Zhou, Yuanping; Zhou, Zhigang; Zhu, Mo; Zhu, Yong-Guan; Chu, Haiyan; Bai, Yang; Liu, Yong-Xin

PEA-m6A: an ensemble learning framework for accurately predicting N6-methyladenosine modifications in plants

PLANT PHYSIOLOGY

IF6.9

2024-03-01

PREAI

Song, Minggui; Zhao, Jiawen; Zhang, Chujun; Jia, Chengchao; Yang, Jing; Zhao, Haonan; Zhai, Jingjing; Lei, Beilei; Tao, Shiheng; Chen, Siqi; Su, Ran; Ma, Chuang

Genome assembly of KA105, a new resource for maize molecular breeding and genomic research 玉米分子育种和基因组研究的新资源KA105的基因组组装

CROP JOURNAL

IF5.6

2023-12-01

OAAI

Li, Ting; Xu, Shutu; Zhao, Jiawen; Wang, Yapeng; Zhang, Jun; Wei, Xin; Qu, Jianzhou; Yu, Ruisu; Zhang, Xinghua; Ma, Chuang; Xue, Jiquan

IPOP: An Integrative Plant Multi-omics Platform for Cross-species Comparison and Evolutionary Study IPOP: 用于跨物种比较和进化研究的整合植物多组学平台

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2023-11-23

OAAI

Huang, Wenyue; Hu, Xiaona; Ren, Yanlin; Song, Minggui; Ma, Chuang; Miao, Zhenyan

Changes in m6A RNA methylation are associated with male sterility in wolfberry 枸杞m6A RNA甲基化改变与雄性不育的关系

BMC PLANT BIOLOGY

IF4.8

2023-09-29

OAAI

Zhao, Jiawen; Zhang, Chujun; Li, Sifan; Yuan, Mengmeng; Mu, Wenlan; Yang, Jing; Ma, Yutong; Guan, Cuiping; Ma, Chuang

Global hypermethylation of the N6-methyladenosine RNA modification associated with apple heterografting

PLANT PHYSIOLOGY

IF6.9

2023-08-30

OAAI

Xu, Jidi; He, Jieqiang; Hu, Bichun; Hou, Nan; Guo, Junxing; Wang, Caixia; Li, Xuewei; Li, Zhongxing; Zhai, Jingjing; Zhang, Ting; Ma, Chuang; Ma, Fengwang; Guan, Qingmei

G2P Provides an Integrative Environment for Multi-model genomic selection analysis to improve genotype-to-phenotype prediction

FRONTIERS IN PLANT SCIENCE

IF4.8

2023-08-04

OAAI

Wang, Qian; Jiang, Shan; Li, Tong; Qiu, Zhixu; Yan, Jun; Fu, Ran; Ma, Chuang; Wang, Xiangfeng; Jiang, Shuqin; Cheng, Qian

Time-resolved multiomics analysis of the genetic regulation of maize kernel moisture 玉米籽粒水分遗传调控的时间分辨多组学分析

CROP JOURNAL

IF5.6

2023-02-01

OAAI

Qu, Jianzhou; Xu, Shutu; Gou, Xiaonan; Zhang, Hao; Cheng, Qian; Wang, Xiaoyue; Ma, Chuang; Xue, Jiquan

easyMF: A Web Platform for Matrix Factorization-Based Gene Discovery from Large-scale Transcriptome Data easyMF: 从大规模转录组数据中基于矩阵分解的基因发现的网络平台

INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES

IF3.9

2022-05-18

PREAI

Ma, Wenlong; Chen, Siyuan; Qi, Yuhong; Song, Minggui; Zhai, Jingjing; Zhang, Ting; Xie, Shang; Wang, Guifeng; Ma, Chuang

Genome optimization via virtual simulation to accelerate maize hybrid breeding 通过虚拟仿真优化基因组以加速玉米杂交育种

BRIEFINGS IN BIOINFORMATICS

IF7.7

2021-10-21

PREAI

Cheng, Qian; Jiang, Shuqing; Xu, Feng; Wang, Qian; Xiao, Yingjie; Zhang, Ruyang; Zhao, Jiuran; Yan, Jianbing; Ma, Chuang; Wang, Xiangfeng

研究方向