Yasubumi Sakakibara - Publications, H-index & Citations

Yasubumi Sakakibara

school of frontier engineering

39H指数

213论文数

6.0K被引数

收录论文 37

发表时间

Genomic resources of Ascidiella aspersa and comparative analysis across tunicates reveal class-level features and evolutionary diversification _ascidiella aspersa_基因组资源及其在海鞘类中的比较分析揭示了纲级特征和进化多样化

BMC Genomics

IF3.7

2026-08-04

OAAI

Takumi T. Shito; Vasanthan Jayakumar; Koki Nishitsuji; Yoshie Nishitsuji; Shimon Kawai; Shunsuke O. Miyasaka; Kotaro Oka; Yasubumi Sakakibara; Kohji Hotta

Cross-species gene redesign leveraging ortholog information and generative modeling 跨物种基因重设计利用直系同源信息与生成式建模

Nature Communications

IF15.7

2026-03-03

OAAI

Manato Akiyama; Motohiko Tashiro; Ying Huang; Mika Uehara; Taiki Kanzaki; Mitsuhiro Itaya; Masakazu Kataoka; Kenji Miyamoto; Yasubumi Sakakibara

Transcriptomic dynamics of petal development in the one-day flower species, Japanese morning glory (Ipomoea nil)日本牵牛花（Ipomoea nil）花瓣发育的转录组动力学

PLANT AND CELL PHYSIOLOGY

IF4

2025-09-01

PREAI

Nakagawa, Soya; Hoshino, Atsushi; Ito, Kazuyo; Nishide, Hiroyo; Shiratake, Katsuhiro; Nagano, Atsushi J.; Sakakibara, Yasubumi

Leveraging tree-transformer VAE with fragment tokenization for high-performance large chemical model generation 利用基于片段标记化的树变换器VAE，实现高性能大型化学模型的生成

Communications Chemistry

IF6.2

2025-08-05

OAAI

Tensei Inukai; Aoi Yamato; Manato Akiyama; Yasubumi Sakakibara

Decoding host-microbiome interactions through co-expression network analysis within the non-human primate intestine 通过非人类灵长类动物肠道内的共表达网络分析解码宿主-微生物组相互作用

MSYSTEMS

IF4.6

2024-05-16

OAAI

Uehara, Mika; Inoue, Takashi; Hase, Sumitaka; Sasaki, Erika; Toyoda, Atsushi; Sakakibara, Yasubumi

Variational autoencoder-based chemical latent space for large molecular structures with 3D complexity 具有3D复杂性的大分子结构的基于变分自动编码器的化学潜空间

COMMUNICATIONS CHEMISTRY

IF6.2

2023-11-16

OAAI

Ochiai, Toshiki; Inukai, Tensei; Akiyama, Manato; Furui, Kairi; Ohue, Masahito; Matsumori, Nobuaki; Inuki, Shinsuke; Uesugi, Motonari; Sunazuka, Toshiaki; Kikuchi, Kazuya; Kakeya, Hideaki; Sakakibara, Yasubumi

Intraintestinal Analysis of the Functional Activity of Microbiomes and Its Application to the Common Marmoset Intestine

MSYSTEMS

IF4.6

2022-10-26

OAAI

Uehara, Mika; Inoue, Takashi; Kominato, Minori; Hase, Sumitaka; Sasaki, Erika; Toyoda, Atsushi; Sakakibara, Yasubumi

Graph Kernels Encoding Features of All Subgraphs by Quantum Superposition

IEEE JOURNAL ON EMERGING AND SELECTED TOPICS IN CIRCUITS AND SYSTEMS

IF3.8

2022-09-01

OAAI

Kishi, Kaito; Satoh, Takahiko; Raymond, Rudy; Yamamoto, Naoki; Sakakibara, Yasubumi

Informative RNA base embedding for RNA structural alignment and clustering by deep representation learning 通过深度表示学习实现RNA结构比对和聚类的信息RNA碱基嵌入

genomics proteomics bioinformatics

IF2.8

2022-02-22

OAAI

Akiyama, Manato; Sakakibara, Yasubumi

Development and preliminary validation of a machine learning system for thyroid dysfunction diagnosis based on routine laboratory tests

COMMUNICATIONS MEDICINE

IF6.3

2022-01-19

OAAI

Hu, Min; Asami, Chikashi; Iwakura, Hiroshi; Nakajima, Yasuyo; Sema, Ryousuke; Kikuchi, Tsuyoshi; Miyata, Tsuyoshi; Sakamaki, Koji; Kudo, Takumi; Yamada, Masanobu; Akamizu, Takashi; Sakakibara, Yasubumi

AI and computational chemistry-accelerated development of an alotaketal analogue with conventional PKC selectivity

CHEMICAL COMMUNICATIONS

IF4.2

2022-01-01

PREAI

Maki, Jumpei; Oshimura, Asami; Tsukano, Chihiro; Yanagita, Ryo C.; Saito, Yutaka; Sakakibara, Yasubumi; Irie, Kazuhiro

A Max-Margin Model for Predicting Residue-Base Contacts in Protein-RNA Interactions

LIFE-BASEL

IF3.4

2021-10-25

OAAI

Kashiwagi, Shunya; Sato, Kengo; Sakakibara, Yasubumi

Deep learning integration of molecular and interactome data for protein-compound interaction prediction 用于蛋白质-化合物相互作用预测的分子和相互作用组数据的深度学习集成

JOURNAL OF CHEMINFORMATICS

IF5.7

2021-05-01

OAAI

Watanabe, Narumi; Ohnuki, Yuuto; Sakakibara, Yasubumi

Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation

NUCLEIC ACIDS RESEARCH

IF13.1

2021-02-15

OAAI

Ishino, Kyoko; Hasuwa, Hidetoshi; Yoshimura, Jun; Iwasaki, Yuka W.; Nishihara, Hidenori; Seki, Naomi M.; Hirano, Takamasa; Tsuchiya, Marie; Ishizaki, Hinako; Masuda, Harumi; Kuramoto, Tae; Saito, Kuniaki; Sakakibara, Yasubumi; Toyoda, Atsushi; Itoh, Takehiko; Siomi, Mikiko C.; Morishita, Shinichi; Siomi, Haruhiko

RNA secondary structure prediction using deep learning with thermodynamic integration

NATURE COMMUNICATIONS

IF15.7

2021-02-11

199

OAAI

Sato, Kengo; Akiyama, Manato; Sakakibara, Yasubumi

An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data 普通狨猴基因组的改进的从头基因组组装产生了改进的连续性和增加的序列数据作图率

BMC GENOMICS

IF3.7

2020-04-02

OAAI

Jayakumar, Vasanthan; Ishii, Hiromi; Seki, Misato; Kumita, Wakako; Inoue, Takashi; Hase, Sumitaka; Sato, Kengo; Okano, Hideyuki; Sasaki, Erika; Sakakibara, Yasubumi

Efficient generation of Knock-in/Knock-out marmoset embryo via CRISPR/Cas9 gene editing

SCIENTIFIC REPORTS

IF3.9

2019-09-03

OAAI

Kumita, Wakako; Sato, Kenya; Suzuki, Yasuhiro; Kurotaki, Yoko; Harada, Takeshi; Zhou, Yang; Kishi, Noriyuki; Sato, Kengo; Aiba, Atsu; Sakakibara, Yasubumi; Feng, Guoping; Okano, Hideyuki; Sasaki, Erika

Guest Editorial for the 16th Asia Pacific Bioinformatics Conference

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2019-01-01

OAAI

Yamanishi, Yoshihiro; Sakakibara, Yasubumi; Chen, Yi-Ping Phoebe

Time-Series Analysis of Tumorigenesis in a Murine Skin Carcinogenesis Model

SCIENTIFIC REPORTS

IF3.9

2018-08-29

OAAI

Aoto, Yoshimasa; Okumura, Kazuhiro; Hachiya, Tsuyoshi; Hase, Sumitaka; Wakabayashi, Yuichi; Ishikawa, Fuyuki; Sakakibara, Yasubumi