Karissa Y. Sanbonmatsu - Publications, H-index & Citations

Karissa Y. Sanbonmatsu

Los Alamos National Laboratory

41H指数

155论文数

5.4K被引数

收录论文 59

发表时间

Cleavage region organizes the structural architecture of the SINE-derived B2 repressive ribozyme 裂解区域组织了源自SINE的B2抑制性核酶的结构架构。

Communications Biology

IF5.1

2026-03-23

OAAI

Ankush Singhal; Tyler Mrozowich; Carlos Rivera; Susmit Narayan Chaudhury; Lilei Xu; Rodrigo Aguilar; Maulik Badmalia; Jeannie T. Lee; Trushar R. Patel; Karissa Y. Sanbonmatsu

Nucleotide-Resolution Mapping Reveals Specific Helicase Binding Site on roX2 lncRNA 核苷酸分辨率作图揭示了roX2 lncRNA上的特异解旋酶结合位点

Journal of Molecular Biology

IF4.5

2026-02-11

OAAI

Susmit Narayan Chaudhury; Nathan Edward Jespersen; Karissa Y. Sanbonmatsu

From 2D to 4D: a containerized workflow and browser to explore dynamic chromatin architecture 从2D到4D: 探索动态染色质架构的容器化工作流程和浏览器

BMC Bioinformatics

IF3.3

2026-01-08

OAAI

David H. Rogers; Cullen Roth; Cameron Tauxe; Jeannie T. Lee; Christina R. Steadman; Karissa Y. Sanbonmatsu; Anna Lappala; Shawn R. Starkenburg

Disruption of histone acetylation homeostasis reveals multilayered chromatin regulation for transcriptional resiliency 组蛋白乙酰化稳态的破坏揭示了多层染色质调控以实现转录韧性

Epigenetics & Chromatin

IF3.5

2025-10-05

OAAI

Vrinda Venu; Eric M. Small; Cullen Roth; Samantha H. Adikari; Anna Hendrika Cornelia Vlot; Kyle A. Sullivan; Chanaka Roshan Abeyratne; Daniel Jacobson; Shawn R. Starkenburg; Karissa Y. Sanbonmatsu; Christina R. Steadman

Acetylcholinesterase: Structure, dynamics, and interactions with organophosphorus compounds 乙酰胆碱酯酶：结构、动力学及其与有机磷化合物的相互作用

PROTEIN SCIENCE

IF5.2

2025-09-19

OAAI

Hung, Li-Wei; Sanbonmatsu, Karissa Y.; Williams, Robert F.; Chen, Julian C-H.

Critical Role of Mg2+ Ions in RNA Folding Transitions: Anchoring the A-Minor Twist in the SAM-II Riboswitch Mg2+离子在RNA折叠转变中的关键作用：锚定SAM-II核酶开关中的A-小转角

JOURNAL OF PHYSICAL CHEMISTRY B

IF2.9

2025-09-01

OAAI

Viegas, Rafael G.; Sinha, Anushree; Mainan, Avijit; Sanbonmatsu, Karissa Y.; Onuchic, Jose N.; Roy, Susmita; Leite, Vitor B. P.

Regulatory helix plays a key role in genetic ON–OFF switching for the 2′-deoxyguanosine-sensing mRNA element 调控螺旋在2′-脱氧鸟苷传感mRNA元件的遗传开关中发挥关键作用。

Journal of Biological Chemistry

IF3.9

2025-07-01

OAAI

Susmit Narayan Chaudhury; Nathan Edward Jespersen; Scott P. Hennelly; Karissa Y. Sanbonmatsu

Exascale simulations and beyond

CURRENT OPINION IN STRUCTURAL BIOLOGY

IF7

2024-12-01

PREAI

Carloni, Paolo; Sanbonmatsu, Karissa

Supercomputing in the biological sciences: Toward Zettascale and Yottascale simulations

CURRENT OPINION IN STRUCTURAL BIOLOGY

IF7

2024-10-01

PREAI

Sanbonmatsu, Karissa

Activation of automethylated PRC2 by dimerization on chromatin

MOLECULAR CELL

IF16.6

2024-10-01

OAAI

Sauer, Paul V.; Pavlenko, Egor; Cookis, Trinity; Zirden, Linda C.; Renn, Juliane; Singhal, Ankush; Hunold, Pascal; Hoehne-Wiechmann, Michaela N.; van Ray, Olivia; Kaschani, Farnusch; Kaiser, Markus; Haensel-Hertsch, Robert; Sanbonmatsu, Karissa Y.; Nogales, Eva; Poepsel, Simon

Multi-omics analysis reveals the dynamic interplay between Vero host chromatin structure and function during vaccinia virus infection

COMMUNICATIONS BIOLOGY

IF5.1

2024-06-11

OAAI

Venu, Vrinda; Roth, Cullen; Adikari, Samantha H.; Small, Eric M.; Starkenburg, Shawn R.; Sanbonmatsu, Karissa Y.; Steadman, Christina R.

Magnesium ions mitigate metastable states in the regulatory landscape of mRNA elements

RNA

IF5

2024-05-22

OAAI

Ding, Erdong; Chaudhury, Susmit Narayan; Prajapati, Jigneshkumar Dahyabhai; Onuchic, Jose N.; Sanbonmatsu, Karissa Y.

Geometric alignment of aminoacyl-tRNA relative to catalytic centers of the ribosome underpins accurate mRNA decoding

NATURE COMMUNICATIONS

IF15.7

2023-09-11

OAAI

Girodat, Dylan; Wieden, Hans-Joachim; Blanchard, Scott C.; Sanbonmatsu, Karissa Y.

Hyper-swivel head domain motions are required for complete mRNA-tRNA translocation and ribosome resetting

NUCLEIC ACIDS RESEARCH

IF13.1

2022-07-09

OAAI

Nishima, Wataru; Girodat, Dylan; Holm, Mikael; Rundlet, Emily J.; Alejo, Jose L.; Fischer, Kara; Blanchard, Scott C.; Sanbonmatsu, Karissa Y.

Four-dimensional chromosome reconstruction elucidates the spatiotemporal reorganization of the mammalian X chromosome 四维染色体重建阐明了哺乳动物X染色体的时空重组

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2021-10-13

OAAI

Lappala, Anna; Wang, Chen-Yu; Kriz, Andrea; Michalk, Hunter; Tan, Kevin; Lee, Jeannie T.; Sanbonmatsu, Karissa Y.

Practical Considerations for Atomistic Structure Modeling with Cryo-EM Maps

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2020-05-18

OAAI

Kim, Doo Nam; Gront, Dominik; Sanbonmatsu, Karissa Y.

Elongation factor-Tu can repetitively engage aminoacyl-tRNA within the ribosome during the proofreading stage of tRNA selection 在tRNA选择的校对阶段，延伸因子-Tu可以在核糖体内重复接合氨酰基-tRNA

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-02-05

OAAI

Morse, Justin C.; Girodat, Dylan; Burnett, Benjamin J.; Holm, Mikael; Altman, Roger B.; Sanbonmatsu, Karissa Y.; Wieden, Hans-Joachim; Blanchard, Scott C.

Zinc-finger protein CNBP alters the 3-D structure of lncRNA Braveheart in solution 锌指蛋白CNBP改变溶液中lncRNA勇敢的心的3-D结构

NATURE COMMUNICATIONS

IF15.7

2020-01-09

OAAI

Kim, Doo Nam; Thiel, Bernhard C.; Mrozowich, Tyler; Hennelly, Scott P.; Hofacker, Ivo L.; Patel, Trushar R.; Sanbonmatsu, Karissa Y.

Cryo_fit: Democratization of flexible fitting for cryo-EM

JOURNAL OF STRUCTURAL BIOLOGY

IF5.1

2019-10-01

OAAI

Kim, Doo Nam; Moriarty, Nigel W.; Kirmizialtin, Serdal; Afonine, Pavel, V; Poon, Billy; Sobolev, Oleg, V; Adams, Paul D.; Sanbonmatsu, Karissa

Scaling molecular dynamics beyond 100,000 processor cores for large-scale biophysical simulations

JOURNAL OF COMPUTATIONAL CHEMISTRY

IF4.8

2019-04-17

OAAI

Jung, Jaewoon; Nishima, Wataru; Daniels, Marcus; Bascom, Gavin; Kobayashi, Chigusa; Adedoyin, Adetokunbo; Wall, Michael; Lappala, Anna; Phillips, Dominic; Fischer, William; Tung, Chang-Shung; Schlick, Tamar; Sugita, Yuji; Sanbonmatsu, Karissa Y.

研究方向