Zhenyu Yue - Publications, H-index & Citations

Zhenyu Yue

School of Information and Artificial Intelligence

15H指数

84论文数

967被引数

收录论文 28

发表时间

A Novel Cancer Driver Genes Identification Method Based on Self-Supervised Dual Masked Graph Autoencoder 基于自监督双掩码图自动编码器的癌症驱动基因识别新方法

Interdisciplinary Sciences-Computational Life Sciences

IF3.9

2026-08-11

PREAI

Pi-Jing Wei; Xinhao Guo; Wenjun Li; Yun Ding; Rui-Fen Cao; Zhenyu Yue; Kanglin Wang; Chun-Hou Zheng

Protein-DNA Binding Sites Prediction via Integrating Pretrained Large Language Models and Contrastive Learning 通过整合预训练大型语言模型和对比学习进行蛋白质- DNA结合位点预测

Interdisciplinary Sciences: Computational Life Sciences

IF0

2025-11-24

PREAI

Zhen Feng; Hui Yu; Xiaoya Guan; Zhenyu Yue; Lichuan Gu; Ke Li; Xiaobo Zhou

Reusability report: A distributed strategy for solving combinatorial optimization problems with hypergraph neural networks 可重用性报告：基于超图神经网络的组合优化问题分布式求解策略

Nature Machine Intelligence

IF23.9

2025-11-19

PREAI

Xiaodi Li; Jianfeng Gui; Wei Xue; Baochuan Wang; Kai Chen; Pijing Wei; Junfeng Xia; Zhenyu Yue

ExplainMIX: Explaining Drug Response Prediction in Directed Graph Neural Networks With Multi-Omics Fusion ExplainMIX：通过多组学融合解释有向图神经网络中的药物反应预测

IEEE Journal of Biomedical and Health Informatics

IF6.8

2025-07-01

PREAI

Ying Xiang; Xiaodi Li; Qian Gao; Junfeng Xia; Zhenyu Yue

RiceSNP-BST: a deep learning framework for predicting biotic stress-associated SNPs in rice

BRIEFINGS IN BIOINFORMATICS

IF7.7

2024-11-19

OAAI

Xu, Jiajun; Gao, Yujia; Lu, Quan; Zhang, Renyi; Gui, Jianfeng; Liu, Xiaoshuang; Yue, Zhenyu

TeaTFactor: A Prediction Tool for Tea Plant Transcription Factors Based on BERT

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2024-11-01

PREAI

Tang, Qinan; Xiang, Ying; Gao, Wanling; Zhu, Liqiang; Xu, Zishu; Li, Yeyun; Yue, Zhenyu

BES-Designer: A Web Tool to Design Guide RNAs for Base Editing to Simplify Library BES-Designer: 一个用于设计指导rna的Web工具，用于碱基编辑以简化库

INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES

IF3.9

2024-10-28

PREAI

Zhou, Qian; Gao, Qian; Gao, Yujia; Zhang, Youhua; Chen, Yanjun; Li, Min; Wei, Pengcheng; Yue, Zhenyu

Comprehensive Assessment of BERT-Based Methods for Predicting Antimicrobial Peptides

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2024-09-24

PREAI

Gao, Wanling; Zhao, Jun; Gui, Jianfeng; Wang, Zehan; Chen, Jie; Yue, Zhenyu

Functional validation of AaCaM3 response to high temperature stress in Amorphophallus albus

BMC PLANT BIOLOGY

IF4.8

2024-06-28

OAAI

Niu, Yi; Zhou, Zixuan; Yue, Zhenyu; Zhang, Xiaofei; Jiang, Xuekuan; Hu, Lingyu; Liu, Quanshuo; Zhang, Xu; Dong, Kun

Reusability report: Uncovering associations in biomedical bipartite networks via a bilinear attention network with domain adaptation

NATURE MACHINE INTELLIGENCE

IF23.9

2024-04-04

PREAI

Xu, Tao; Shi, Haoyuan; Gao, Wanling; Wang, Xiaosong; Yue, Zhenyu

Crop-GPA: an integrated platform of crop gene-phenotype associations

NPJ SYSTEMS BIOLOGY AND APPLICATIONS

IF3.5

2024-02-12

OAAI

Gao, Yujia; Zhou, Qian; Luo, Jiaxin; Xia, Chuan; Zhang, Youhua; Yue, Zhenyu

PDDGCN: A Parasitic Disease-Drug Association Predictor Based on Multi-view Fusion Graph Convolutional Network

INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES

IF3.9

2024-01-31

PREAI

Wang, Xiaosong; Chen, Guojun; Hu, Hang; Zhang, Min; Rao, Yuan; Yue, Zhenyu

PredinID: Predicting Pathogenic Inframe Indels in Human Through Graph Convolution Neural Network With Graph Sampling Technique PredinID: 通过图卷积神经网络和图采样技术预测人类的致病性Inframe Indels

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2023-09-01

PREAI

Yue, Zhenyu; Xiang, Ying; Chen, Guojun; Wang, Xiaosong; Li, Ke; Zhang, Youhua

GRA-GCN: Dense Granule Protein Prediction in Apicomplexa Protozoa Through Graph Convolutional Network

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2023-05-01

PREAI

Shi, Haoyuan; Feng, Haisong; Lu, Zhenxiao; Xue, Wei; Yang, Congshan; Yue, Zhenyu

Development and validation of a machine learning algorithm prediction for dense granule proteins in Apicomplexa

PARASITES & VECTORS

IF3.5

2023-03-14

OAAI

Lu, Zhenxiao; Hu, Hang; Song, Yashan; Zhou, Siyi; Ayanniyi, Olalekan Opeyemi; Xu, Qianming; Yue, Zhenyu; Yang, Congshan

DGPD: a knowledge database of dense granule proteins of the Apicomplexa

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2022-09-27

OAAI

Hu, Hang; Lu, Zhenxiao; Feng, Haisong; Chen, Guojun; Wang, Yongmei; Yang, Congshan; Yue, Zhenyu

Pharmacogenomic Cluster Analysis of Lung Cancer Cell Lines Provides Insights into Preclinical Model Selection in NSCLC

INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES

IF3.9

2022-04-27

PREAI

Shen, Yueyue; Xiang, Ying; Huang, Xiaolong; Zhang, Youhua; Yue, Zhenyu

RicENN: Prediction of Rice Enhancers with Neural Network Based on DNA Sequences

INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES

IF3.9

2022-02-21

PREAI

Gao, Yujia; Chen, Yiqiong; Feng, Haisong; Zhang, Youhua; Yue, Zhenyu

Expression of the Amorphophallus albus heat stress transcription factor AaHsfA1 enhances tolerance to environmental stresses in Arabidopsis

INDUSTRIAL CROPS AND PRODUCTS

IF6.2

2021-12-01

PREAI

Yue, Zhenyu; Wang, Yinghong; Zhang, Nan; Zhang, Bei; Niu, Yi

dbMCS: A Database for Exploring the Mutation Markers of Anti-Cancer Drug Sensitivity

IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS

IF6.8

2021-11-01

PREAI

Shen, Yueyue; Zhang, Youhua; Xue, Wei; Yue, Zhenyu

研究方向