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From clinics to sewers: leveraging environmental surveillance and whole genome sequencing to inform transmission of ESBL-Escherichia coli in Switzerland 康福尼等. 从临床到下水道：利用环境监测和全基因组测序来了解瑞士产ESBL大肠杆菌的传播. 应用与环境微生物学, 2026, 92, e01848-25. [Google Scholar] [CrossRef] Conforti, Sheena; Du Plessis, Louis; Bagutti, Claudia; Becker, Jens; Brugger, Silvio D.; Cusini, Alexia; Egli, Adrian; Gaia, Valeria; Greub, Gilbert; Guler, Cornelia; Huisman, Jana S.; Kocher, Claudine; Kouyos, Roger D.; Leuzinger, Karoline; Maffioli, Carola; Neacsu, Mara; Nolte, Oliver; Ramette, Alban; Seiffert, Salome N.; Tschudin-Sutter, Sarah; Zumthor, Jon Paulin; Stadler, Tanja; Julian, Timothy R. 分享 收藏
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Zoonotic hepatitis E virus spreads through environmental routes in pig herds-A phylodynamic analysis Meester, Marina; Valenzuela Agui, Cecilia; Tobias, Tijs J.; Guinat, Claire; Bouwknegt, Martijn; Du Plessis, Louis; Fischer, Egil A. J.; Spaninks, Mirlin; Stadler, Tanja; Van Der Poel, Wim H. M.; Stegeman, Arjan 分享 收藏
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Onset of infectiousness explains differences in transmissibility across Mycobacterium tuberculosis lineages Windels, Etthel M.; Agui, Cecilia Valenzuela; de Jong, Bouke C.; Meehan, Conor J.; Loiseau, Chloe; Goig, Galo A.; Zwyer, Michaela; Borrell, Sonia; Brites, Daniela; Gagneux, Sebastien; Stadler, Tanja 分享 收藏
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The lives of cells, recorded Askary, Amjad; Chen, Wei; Choi, Junhong; Du, Lucia Y.; Elowitz, Michael B.; Gagnon, James A.; Schier, Alexander F.; Seidel, Sophie; Shendure, Jay; Stadler, Tanja; Tran, Martin 分享 收藏
Prospective One-Health investigation into low-abundant extended-spectrum β-lactamase producing Enterobacterales enables detection of potential dissemination events and persistence Garcia-Martin, Ana B.; Aguilar-Bultet, Lisandra; Gomez-Sanz, Elena; Hug, Monica Alt; Furger, Reto; Eichenberger, Lucas; Schindler, Ruth; Steffen, Ingrid; Egli, Adrian; Stadler, Tanja; Bagutti, Claudia; Tschudin-Sutter, Sarah 分享 收藏
V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation Fuhrmann, Lara; Jablonski, Kim Philipp; Topolsky, Ivan; Batavia, Aashil A.; Borgsmueller, Nico; Baykal, Pelin Icer; Carrara, Matteo; Chen, Chaoran; Dondi, Arthur; Dragan, Monica; Dreifuss, David; John, Anika; Langer, Benjamin; Okoniewski, Michal; du Plessis, Louis; Schmitt, Uwe; Singer, Franziska; Stadler, Tanja; Beerenwinkel, Niko 分享 收藏
Monitoring an Emergent Pathogen at Low Incidence in Wastewater Using qPCR: Mpox in Switzerland Julian, Timothy R.; Devaux, Alexander J.; Brulisauer, Laura; Conforti, Sheena; Rusch, Johannes C.; Gan, Charles; Bagutti, Claudia; Stadler, Tanja; Kohn, Tamar; Ort, Christoph 分享 收藏
HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa 撒哈拉以南非洲地区HIV合并感染与结核分枝杆菌传染性减少有关 Windels, Etthel M.; Wampande, Eddie M.; Joloba, Moses L.; Boom, W. Henry; Goig, Galo A.; Cox, Helen; Hella, Jerry; Borrell, Sonia; Gagneux, Sebastien; Brites, Daniela; Stadler, Tanja 分享 收藏
How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort Wegner, Fanny; Cabrera-Gil, Blanca; Tanguy, Araud; Beckmann, Christiane; Beerenwinkel, Niko; Bertelli, Claire; Carrara, Matteo; Cerutti, Lorenzo; Chen, Chaoran; Cordey, Samuel; Dumoulin, Alexis; du Plessis, Louis; Friedli, Marc; Gerth, Yannick; Greub, Gilbert; Haerri, Adrian; Hirsch, Hans; Howald, Cedric; Huber, Michael; Imhof, Alexander; Kaiser, Laurent; Kufner, Verena; Leib, Stephen L.; Leuzinger, Karoline; Lleshi, Etleva; Martinetti, Gladys; Maeusezahl, Mirjam; Moraz, Milo; Neher, Richard; Nolte, Oliver; Ramette, Alban; Redondo, Maurice; Risch, Lorenz; Rohner, Lionel; Roloff, Tim; Schlaeepfer, Pascal; Schneider, Katrin; Singer, Franziska; Spina, Valeria; Stadler, Tanja; Studer, Erik; Topolsky, Ivan; Trkola, Alexandra; Walther, Daniel; Wohlwend, Nadia; Zehnder, Cinzia; Neves, Aitana; Egli, Adrian 分享 收藏
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