未登录 Integrating DNA methylation and gene expression data in a single gene network using the iNETgrate package Sajedi, Sogand; Ebrahimi, Ghazal; Roudi, Raheleh; Mehta, Isha; Heshmat, Amirreza; Samimi, Hanie; Kazempour, Shiva; Zainulabadeen, Aamir; Docking, Thomas Roderick; Arora, Sukeshi Patel; Cigarroa, Francisco; Seshadri, Sudha; Karsan, Aly; Zare, Habil 分享 收藏
A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia Docking, T. Roderick; Parker, Jeremy D. K.; Jadersten, Martin; Duns, Gerben; Chang, Linda; Jiang, Jihong; Pilsworth, Jessica A.; Swanson, Lucas A.; Chan, Simon K.; Chiu, Readman; Nip, Ka Ming; Mar, Samantha; Mo, Angela; Wang, Xuan; Martinez-Hoyer, Sergio; Stubbins, Ryan J.; Mungall, Karen L.; Mungall, Andrew J.; Moore, Richard A.; Jones, Steven J. M.; Birol, Inanc; Marra, Marco A.; Hogge, Donna; Karsan, Aly 分享 收藏
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Loss of lenalidomide-induced megakaryocytic differentiation leads to therapy resistance in del(5q) myelodysplastic syndrome Martinez-Hoyer, Sergio; Deng, Yu; Parker, Jeremy; Jiang, Jihong; Mo, Angela; Docking, T. Roderick; Gharaee, Nadia; Li, Jenny; Umlandt, Patricia; Fuller, Megan; Jadersten, Martin; Kulasekararaj, Austin; Malcovati, Luca; List, Alan F.; Hellstrom-Lindberg, Eva; Platzbecker, Uwe; Karsan, Aly 分享 收藏
Sample Tracking Using Unique Sequence Controls Moore, Richard A.; Zeng, Thomas; Docking, T. Roderick; Bosdet, Ian; Butterfield, Yaron S.; Munro, Sarah; Li, Irene; Swanson, Lucas; Starks, Elizabeth R.; Tse, Kane; Mungall, Andrew J.; Holt, Robert A.; Karsan, Aly 分享 收藏
Fixation Effects on Variant Calling in a Clinical Resequencing Panel Parker, Jeremy D. K.; Yap, Shyong Quin; Starks, Elizabeth; Slind, Jillian; Swanson, Lucas; Docking, T. Roderick; Fuller, Megan; Zhou, Chen; Walker, Blair; Filipenko, Douglas; Xiong, Wei; Karimuddin, Ahmer A.; Phang, P. Terry; Raval, Manoj; Brown, Carl J.; Karsan, Aly 分享 收藏
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Meis2 as a critical player in MN1-induced leukemia Lai, C. K.; Norddahl, G. L.; Maetzig, T.; Rosten, P.; Lohr, T.; Milde, L. Sanchez; von Krosigk, N.; Docking, T. R.; Heuser, M.; Karsan, A.; Humphries, R. K. 分享 收藏
A Clinically Validated Diagnostic Second-Generation Sequencing Assay for Detection of Hereditary BRCA1 and BRCA2 Mutations Bosdet, Ian E.; Docking, T. Roderick; Butterfield, Yaron S.; Mungall, Andrew J.; Zeng, Thomas; Coope, Robin J.; Yorida, Erika; Chow, Katie; Bala, Miruna; Young, Sean S.; Hirst, Martin; Birol, Inanc; Moore, Richard A.; Jones, Steven J.; Marra, Marco A.; Holt, Rob; Karsan, Aly 分享 收藏
Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies Swanson, Lucas; Robertson, Gordon; Mungall, Karen L.; Butterfield, Yaron S.; Chiu, Readman; Corbett, Richard D.; Docking, T. Roderick; Hogge, Donna; Jackman, Shaun D.; Moore, Richard A.; Mungall, Andrew J.; Nip, Ka Ming; Parker, Jeremy D. K.; Qian, Jenny Qing; Raymond, Anthony; Sung, Sandy; Tam, Angela; Thiessen, Nina; Varhol, Richard; Wang, Sherry; Yorukoglu, Deniz; Zhao, YongJun; Hoodless, Pamela A.; Sahinalp, S. Cenk; Karsan, Aly; Birol, Inanc 分享 收藏
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species Assemblathon 2: 评估三种脊椎动物物种基因组组装的从头方法 Bradnam, Keith R.; Fass, Joseph N.; Alexandrov, Anton; Baranay, Paul; Bechner, Michael; Birol, Inanc; Boisvert, Sebastien; Chapman, Jarrod A.; Chapuis, Guillaume; Chikhi, Rayan; Chitsaz, Hamidreza; Chou, Wen-Chi; Corbeil, Jacques; Del Fabbro, Cristian; Docking, T. Roderick; Durbin, Richard; Earl, Dent; Emrich, Scott; Fedotov, Pavel; Fonseca, Nuno A.; Ganapathy, Ganeshkumar; Gibbs, Richard A.; Gnerre, Sante; Godzaridis, Elenie; Goldstein, Steve; Haimel, Matthias; Hall, Giles; Haussler, David; Hiatt, Joseph B.; Ho, Isaac Y.; Howard, Jason; Hunt, Martin; Jackman, Shaun D.; Jaffe, David B.; Jarvis, Erich D.; Jiang, Huaiyang; Kazakov, Sergey; Kersey, Paul J.; Kitzman, Jacob O.; Knight, James R.; Koren, Sergey; Lam, Tak-Wah; Lavenier, Dominique; Laviolette, Francois; Li, Yingrui; Li, Zhenyu; Liu, Binghang; Liu, Yue; Luo, Ruibang; MacCallum, Iain; MacManes, Matthew D.; Maillet, Nicolas; Melnikov, Sergey; Naquin, Delphine; Ning, Zemin; Otto, Thomas D.; Paten, Benedict; Paulo, Octavio S.; Phillippy, Adam M.; Pina-Martins, Francisco; Place, Michael; Przybylski, Dariusz; Qin, Xiang; Qu, Carson; Ribeiro, Filipe J.; Richards, Stephen; Rokhsar, Daniel S.; Ruby, J. Graham; Scalabrin, Simone; Schatz, Michael C.; Schwartz, David C.; Sergushichev, Alexey; Sharpe, Ted; Shaw, Timothy I.; Shendure, Jay; Shi, Yujian; Simpson, Jared T.; Song, Henry; Tsarev, Fedor; Vezzi, Francesco; Vicedomini, Riccardo; Vieira, Bruno M.; Wang, Jun; Worley, Kim C.; Yin, Shuangye; Yiu, Siu-Ming; Yuan, Jianying; Zhang, Guojie; Zhang, Hao; Zhou, Shiguo; Korf, Ian F. 分享 收藏
The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera Haridas, Sajeet; Wang, Ye; Lim, Lynette; Alamouti, Sepideh Massoumi; Jackman, Shaun; Docking, Rod; Robertson, Gordon; Birol, Inanc; Bohlmann, Joerg; Breuil, Colette 分享 收藏
Transcriptome resources and functional characterization of monoterpene synthases for two host species of the mountain pine beetle, lodgepole pine (Pinus contorta) and jack pine (Pinus banksiana) Hall, Dawn E.; Yuen, Macaire M. S.; Jancsik, Sharon; Quesada, Alfonso Lara; Dullat, Harpreet K.; Li, Maria; Henderson, Hannah; Arango-Velez, Adriana; Liao, Nancy Y.; Docking, Roderick T.; Chan, Simon K.; Cooke, Janice E. K.; Breuil, Colette; Jones, Steven J. M.; Keeling, Christopher I.; Bohlmann, Joerg 分享 收藏
Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest Keeling, Christopher I.; Yuen, Macaire M. S.; Liao, Nancy Y.; Docking, T. Roderick; Chan, Simon K.; Taylor, Greg A.; Palmquist, Diana L.; Jackman, Shaun D.; Anh Nguyen; Li, Maria; Henderson, Hannah; Janes, Jasmine K.; Zhao, Yongjun; Pandoh, Pawan; Moore, Richard; Sperling, Felix A. H.; Huber, Dezene P. W.; Birol, Inanc; Jones, Steven J. M.; Bohlmann, Joerg 分享 收藏
Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests Keeling, Christopher I.; Henderson, Hannah; Li, Maria; Yuen, Mack; Clark, Erin L.; Fraser, Jordie D.; Huber, Dezene P. W.; Liao, Nancy Y.; Docking, T. Roderick; Birol, Inanc; Chan, Simon K.; Taylor, Greg A.; Palmquist, Diana; Jones, Steven J. M.; Bohlmann, Joerg 分享 收藏
Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees Chan, Queenie W. T.; Cornman, R. Scott; Birol, Inanc; Liao, Nancy Y.; Chan, Simon K.; Docking, T. Roderick; Jackman, Shaun D.; Taylor, Greg A.; Jones, Steven J. M.; de Graaf, Dirk C.; Evans, Jay D.; Foster, Leonard J. 分享 收藏
Assemblathon 1: A competitive assessment of de novo short read assembly methods Earl, Dent; Bradnam, Keith; St John, John; Darling, Aaron; Lin, Dawei; Fass, Joseph; Hung On Ken Yu; Buffalo, Vince; Zerbino, Daniel R.; Diekhans, Mark; Ngan Nguyen; Ariyaratne, Pramila Nuwantha; Sung, Wing-Kin; Ning, Zemin; Haimel, Matthias; Simpson, Jared T.; Fonseca, Nuno A.; Birol, Inanc; Docking, T. Roderick; Ho, Isaac Y.; Rokhsar, Daniel S.; Chikhi, Rayan; Lavenier, Dominique; Chapuis, Guillaume; Naquin, Delphine; Maillet, Nicolas; Schatz, Michael C.; Kelley, David R.; Phillippy, Adam M.; Koren, Sergey; Yang, Shiaw-Pyng; Wu, Wei; Chou, Wen-Chi; Srivastava, Anuj; Shaw, Timothy I.; Ruby, J. Graham; Skewes-Cox, Peter; Betegon, Miguel; Dimon, Michelle T.; Solovyev, Victor; Seledtsov, Igor; Kosarev, Petr; Vorobyev, Denis; Ramirez-Gonzalez, Ricardo; Leggett, Richard; MacLean, Dan; Xia, Fangfang; Luo, Ruibang; Li, Zhenyu; Xie, Yinlong; Liu, Binghang; Gnerre, Sante; MacCallum, Iain; Przybylski, Dariusz; Ribeiro, Filipe J.; Yin, Shuangye; Sharpe, Ted; Hall, Giles; Kersey, Paul J.; Durbin, Richard; Jackman, Shaun D.; Chapman, Jarrod A.; Huang, Xiaoqiu; DeRisi, Joseph L.; Caccamo, Mario; Li, Yingrui; Jaffe, David B.; Green, Richard E.; Haussler, David; Korf, Ian; Paten, Benedict 分享 收藏
Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen DiGuistini, Scott; Wang, Ye; Liao, Nancy Y.; Taylor, Greg; Tanguay, Philippe; Feau, Nicolas; Henrissat, Bernard; Chan, Simon K.; Hesse-Orce, Uljana; Alamouti, Sepideh Massoumi; Tsui, Clement K. M.; Docking, Roderick T.; Levasseur, Anthony; Haridas, Sajeet; Robertson, Gordon; Birol, Inanc; Holt, Robert A.; Marra, Marco A.; Hamelin, Richard C.; Hirst, Martin; Jones, Steven J. M.; Bohlmann, Joerg; Breuil, Colette 分享 收藏
Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera Hesse-Orce, Uljana; DiGuistini, Scott; Keeling, Christopher I.; Wang, Ye; Li, Maria; Henderson, Hannah; Docking, T. Roderick; Liao, Nancy Y.; Robertson, Gordon; Holt, Robert A.; Jones, Steven J. M.; Bohlmann, Joerg; Breuil, Colette 分享 收藏
A regulatory toolbox of MiniPromoters to drive selective expression in the brain 驱动大脑选择性表达的微型启动子调控工具箱 Portales-Casamar, Elodie; Swanson, Douglas J.; Liu, Li; de Leeuw, Charles N.; Banks, Kathleen G.; Sui, Shannan J. Ho; Fulton, Debra L.; Ali, Johar; Amirabbasi, Mahsa; Arenillas, David J.; Babyak, Nazar; Black, Sonia F.; Bonaguro, Russell J.; Brauer, Erich; Candido, Tara R.; Castellarin, Mauro; Chen, Jing; Chen, Ying; Cheng, Jason C. Y.; Chopra, Vik; Docking, T. Roderick; Dreolini, Lisa; D'Souza, Cletus A.; Flynn, Erin K.; Glenn, Randy; Hatakka, Kristi; Hearty, Taryn G.; Imanian, Behzad; Jiang, Steven; Khorasan-zadeh, Shadi; Komljenovic, Ivana; Laprise, Stephanie; Liao, Nancy Y.; Lim, Jonathan S.; Lithwick, Stuart; Liu, Flora; Liu, Jun; Lu, Meifen; McConechy, Melissa; McLeod, Andrea J.; Milisavljevic, Marko; Mis, Jacek; O'Connor, Katie; Palma, Betty; Palmquist, Diana L.; Schmouth, Jean-Francois; Swanson, Magdalena I.; Tam, Bonny; Ticoll, Amy; Turner, Jenna L.; Varhol, Richard; Vermeulen, Jenny; Watkins, Russell F.; Wilson, Gary; Wong, Bibiana K. Y.; Wong, Siaw H.; Wong, Tony Y. T.; Yang, George S.; Ypsilanti, Athena R.; Jones, Steven J. M.; Holt, Robert A.; Goldowitz, Daniel; Wasserman, Wyeth W.; Simpson, Elizabeth M. 分享 收藏
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