Travis J. Wheeler - Publications, H-index & Citations

Travis J. Wheeler

university of arizona

23H指数

121论文数

7.0K被引数

收录论文 18

发表时间

Rational reduction of a sorghum SynCom that preserves growth promotion reveals flavonoid-mediated plant–microbe interactions 理性减少高粱合成群落，在保持促生长作用的同时揭示了类黄酮介导的植物-微生物相互作用

New Phytologist

IF8.1

2026-07-29

OAAI

Dean Pettinga; Citlali Fonseca-García; Genevieve Krause; Hannah Ploemacher; Travis Wheeler; Chaevien S. Clendinen; Pubudu Handakumbura; Robert Egbert; Devin Coleman-Derr

MDCompress: better, faster compression of molecular dynamics simulation trajectories MDCompress：分子动力学模拟轨迹的更好、更快的压缩

Bioinformatics

IF5.4

2026-04-10

OAAI

Marek Kokot; Amitava Roy; Travis J Wheeler; Sebastian Deorowicz; null

NEAR: neural embeddings for amino acid relationships NEAR：氨基酸关系的神经嵌入

BIOINFORMATICS

IF5.4

2025-07-01

OAAI

Olson, Daniel; Colligan, Thomas; Demekas, Daphne; Roddy, Jack W.; Youens-Clark, Ken; Wheeler, Travis J.

Phenome-wide association of APOE alleles in the All of Us Research Program 全美研究计划中APOE等位基因的全基因组关联分析

eBioMedicine

IF10.8

2025-05-31

OAAI

Ehsan Khajouei; Valentina Ghisays; Ignazio S. Piras; Kiana L. Martinez; Anthony T. Vicenti; Marcus Naymik; Preston Ngo; Tam C. Tran; Joshua C. Denny; Travis J. Wheeler; Matthew J. Huentelman; Eric M. Reiman; Jason H. Karnes

MDRepo-an open data warehouse for community-contributed molecular dynamics simulations of proteins

NUCLEIC ACIDS RESEARCH

IF13.1

2024-11-13

OAAI

Roy, Amitava; Ward, Ethan; Choi, Illyoung; Cosi, Michele; Edgin, Tony; Hughes, Travis S.; Islam, Md Shafayet; Khan, Asif M.; Kolekar, Aakash; Rayl, Mariah; Robinson, Isaac; Sarando, Paul; Skidmore, Edwin; Swetnam, Tyson L.; Wall, Mariah; Xu, Zhuoyun; Yung, Michelle L.; Merchant, Nirav; Wheeler, Travis J.

A unified framework to analyze transposable element insertion polymorphisms using graph genomes

NATURE COMMUNICATIONS

IF15.7

2024-10-16

OAAI

Groza, Cristian; Chen, Xun; Wheeler, Travis J.; Bourque, Guillaume; Goubert, Clement

Do Molecular Fingerprints Identify Diverse Active Drugs in Large-Scale Virtual Screening? (No)

PHARMACEUTICALS

IF4.8

2024-07-26

OAAI

Venkatraman, Vishwesh; Gaiser, Jeremiah; Demekas, Daphne; Roy, Amitava; Xiong, Rui; Wheeler, Travis J.

VIBES: a workflow for annotating and visualizing viral sequences integrated into bacterial genomes

genomics proteomics bioinformatics

IF2.8

2024-04-04

OAAI

Copeland, Conner J.; Roddy, Jack W.; Schmidt, Amelia K.; Secor, Patrick R.; Wheeler, Travis J.

SODA: a TypeScript/JavaScript library for visualizing biological sequence annotation

genomics proteomics bioinformatics

IF2.8

2022-10-06

OAAI

Roddy, Jack W.; Lesica, George T.; Wheeler, Travis J.

Accuracy of multiple sequence alignment methods in the reconstruction of transposable element families

genomics proteomics bioinformatics

IF2.8

2022-05-17

OAAI

Hubley, Robert; Wheeler, Travis J.; Smit, Arian F. A.

Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections

FRONTIERS IN IMMUNOLOGY

IF5.9

2020-02-21

OAAI

Secor, Patrick R.; Burgener, Elizabeth B.; Kinnersley, M.; Jennings, Laura K.; Roman-Cruz, Valery; Popescu, Medeea; Van Belleghem, Jonas D.; Haddock, Naomi; Copeland, Conner; Michaels, Lia A.; de Vries, Christiaan R.; Chen, Qingquan; Pourtois, Julie; Wheeler, Travis J.; Milla, Carlos E.; Bollyky, Paul L.

15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms

NUCLEIC ACIDS RESEARCH

IF13.1

2018-11-16

212

OAAI

Hornbeck, Peter V.; Kornhauser, Jon M.; Latham, Vaughan; Murray, Beth; Nandhikonda, Vidhisha; Nord, Alex; Skrzypek, Elzbieta; Wheeler, Travis; Zhang, Bin; Gnad, Florian

Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks

SCIENCE SIGNALING

IF6.6

2018-05-22

OAAI

Grimes, Mark; Hall, Benjamin; Foltz, Lauren; Levy, Tyler; Rikova, Klarisa; Gaiser, Jeremiah; Cook, William; Smirnova, Ekaterina; Wheeler, Travis; Clark, Neil R.; Lachmann, Alexander; Zhang, Bin; Hornbeck, Peter; Ma'ayan, Avi; Comb, Michael

The Dfam database of repetitive DNA families

NUCLEIC ACIDS RESEARCH

IF13.1

2015-11-26

467

OAAI

Hubley, Robert; Finn, Robert D.; Clements, Jody; Eddy, Sean R.; Jones, Thomas A.; Bao, Weidong; Smit, Arian F. A.; Wheelers, Travis J.

HMMER web server: 2015 update

NUCLEIC ACIDS RESEARCH

IF13.1

2015-05-05

758