Amarda Shehu - Publications, H-index & Citations

Amarda Shehu

george mason university

29H指数

259论文数

3.4K被引数

收录论文 41

发表时间

Four questions for AI-ready biological data 为AI准备就绪的生物数据的四个问题

Nature Machine Intelligence

IF23.9

2026-07-10

PREAI

Amarda Shehu; Ruth Nussinov

DyVarMap: Integrating Conformational Dynamics and Interpretable Machine Learning for Cancer-Associated Missense Variant Classification in FGFR2 DyVarMap：整合构象动力学与可解释机器学习方法，用于FGFR2癌症相关错义变异分类

Bioengineering

IF3.7

2026-03-04

OAAI

Yiyang Lian; Amarda Shehu

DNA breathing integration with deep learning foundational model advances genome-wide binding prediction of human transcription factors DNA呼吸与深度学习基础模型的整合促进了人类转录因子的全基因组结合预测

NUCLEIC ACIDS RESEARCH

IF13.1

2024-09-13

OAAI

Kabir, Anowarul; Bhattarai, Manish; Peterson, Selma; Najman-Licht, Yonatan; Rasmussen, Kim O.; Shehu, Amarda; Bishop, Alan R.; Alexandrov, Boian; Usheva, Anny

Variant Effect Prediction in the Age of Machine Learning

cold spring harbor perspectives in medicine

IF8.4

2024-04-15

PREAI

Bromberg, Yana; Prabakaran, R.; Kabir, Anowarul; Shehu, Amarda

Adaptive Stochastic Optimization to Improve Protein Conformation Sampling 自适应随机优化改进蛋白质构象采样

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2023-09-01

PREAI

Zaman, Ahmed Bin; Inan, Toki Tahmid; De Jong, Kenneth; Shehu, Amarda

Improved Protein Decoy Selection via Non-Negative Matrix Factorization 通过非负矩阵分解改进蛋白质诱饵选择

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2022-05-01

PREAI

Akhter, Nasrin; Kabir, Kazi Lutful; Chennupati, Gopinath; Vangara, Raviteja; Alexandrov, Boian; Djidjev, Hristo N.; Shehu, Amarda

Editorial overview: Theory and simulation and their new friends

CURRENT OPINION IN STRUCTURAL BIOLOGY

IF7

2021-04-01

PREAI

Shehu, Amarda; Van der Spoel, David

Generative deep learning for macromolecular structure and dynamics

CURRENT OPINION IN STRUCTURAL BIOLOGY

IF7

2021-04-01

PREAI

Hoseini, Pourya; Zhao, Liang; Shehu, Amarda

Generative Adversarial Learning of Protein Tertiary Structures 蛋白质三级结构的生成对抗学习

MOLECULES

IF4.6

2021-02-24

OAAI

Rahman, Taseef; Du, Yuanqi; Zhao, Liang; Shehu, Amarda

Anomaly Detection-Based Recognition of Near-Native Protein Structures 基于异常检测的近天然蛋白质结构识别

IEEE TRANSACTIONS ON NANOBIOSCIENCE

IF4.4

2020-07-01

OAAI

Tadepalli, Sivani; Akhter, Nasrin; Barbara, Daniel; Shehu, Amarda

Reducing Ensembles of Protein Tertiary Structures Generated De Novo via Clustering 通过聚类减少从头生成的蛋白质三级结构的集合

MOLECULES

IF4.6

2020-05-09

OAAI

Zaman, Ahmed Bin; Kamranfar, Parastoo; Domeniconi, Carlotta; Shehu, Amarda

Evaluating Autoencoder-Based Featurization and Supervised Learning for Protein Decoy Selection 评估基于自动编码器的特征化和监督学习以进行蛋白质诱饵选择

MOLECULES

IF4.6

2020-03-04

OAAI

Alam, Fardina Fathmiul; Rahman, Taseef; Shehu, Amarda

Investigation of a dilated cardiomyopathy-associated variant in BAG3 using genome-edited iPSC-derived cardiomyocytes

JCI INSIGHT

IF6.1

2019-11-14

OAAI

McDermott-Roe, Chris; Lv, Wenjian; Maximova, Tania; Wada, Shogo; Bukowy, John; Marquez, Maribel; Lai, Shuping; Shehu, Amarda; Benjamin, Ivor; Geurts, Aron; Musunuru, Kiran

Guest Editorial for the ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics ACM生物信息学，计算生物学和健康信息学国际会议的客座社论

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2019-09-01

OAAI

Shehu, Amarda; Pozzi, Giuseppe; Kahveci, Tamer

Modeling the Tertiary Structure of the Rift Valley Fever Virus L Protein

MOLECULES

IF4.6

2019-05-07

OAAI

Gogovi, Gideon K.; Almsned, Fahad; Bracci, Nicole; Kehn-Hall, Kylene; Shehu, Amarda; Blaisten-Barojas, Estela