Zhi-Jie Tan - Publications, H-index & Citations

谭

谭志杰 (Zhi-Jie Tan)

Wuhan University

34H指数

124论文数

3.2K被引数

收录论文 54

发表时间

TriRNASP: A knowledge-based potential with three-body effects for accurate RNA structure evaluation TriRNASP: 一种基于知识的三体效应势能，用于精确的RNA结构评估

Biophysical Journal

IF3.1

2026-04-06

PREAI

Tongwei Yuan; En Lou; Zouchenyu Zhou; Ya-Lan Tan; Zhi-Jie Tan

Low-polar solvent strikingly stiffens double-stranded RNA and reverses its twist-stretch coupling

Biophysical Journal

IF3.1

2026-01-03

PREAI

Chen-Chen Zheng; Yun-Long Chen; Hai-Long Dong; Liang Dai; Xing-Hua Zhang; Zhi-Jie Tan

rsRNASP1: A distance- and dihedral-dependent statistical potential for RNA 3D structure evaluation rsRNASP1: 一种基于距离和二面角依赖关系的RNA 3D结构评估统计势能

Biophysical Journal

IF3.1

2025-07-12

PREAI

En Lou; Chen-Chen Zheng; Shixiong Yu; Ya-Lan Tan; Zhi-Jie Tan

Effect of protein binding on the twist-stretch coupling of double-stranded RNA 蛋白质结合对双链RNA扭转-拉伸耦合效应的影响

JOURNAL OF CHEMICAL PHYSICS

IF3.1

2025-04-08

PREAI

Dong, Hai-Long; Zheng, Chen-Chen; Dai, Liang; Zhang, Xing-Hua; Tan, Zhi-Jie

Counterintuitive DNA destabilization by monovalent salt at high concentrations due to overcharging 高浓度下单价盐由于过度带电导致的反直觉DNA去稳定化

NATURE COMMUNICATIONS

IF15.7

2025-01-02

OAAI

Zhang, Chen; Tian, Fu-Jia; Zuo, Hong-Wei; Qiu, Qi-Yuan; Zhang, Jia-Hao; Wei, Wei; Tan, Zhi-Jie

Virus-bacterium interaction involved in element cycles in biological treatment of coking wastewater

BIORESOURCE TECHNOLOGY

IF9

2025-01-01

PREAI

Tan, Zhijie; Chen, Wenli; Wei, Xinyi; Qiu, Zhaoji; Zhuang, Weixiong; Zhang, Baoshan; Xie, Junting; Lin, Yuexia; Ren, Yuan; Preis, Sergei; Wei, Chaohai; Zhu, Shuang

Seasonal dynamics of bacterial composition and functions in biological treatment of coking wastewater 焦化废水生物处理中细菌组成和功能的季节动态

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

IF4.3

2024-10-18

OAAI

Tan, Zhijie; Chen, Wenli; Guo, Ziyu; Xu, Xingyuan; Xie, Junting; Dai, Jiangpeng; Lin, Yuexia; Sheng, Binbin; Preis, Sergei; Wei, Chaohai; Zhu, Shuang

Effect of ethanol on the elasticities of double-stranded RNA and DNA revealed by magnetic tweezers and simulations

JOURNAL OF CHEMICAL PHYSICS

IF3.1

2024-08-15

PREAI

Zheng, Chen-Chen; Chen, Yun-Long; Dong, Hai-Long; Zhang, Xing-Hua; Tan, Zhi-Jie

Symbiotic virus-bacteria interactions in biological treatment of coking wastewater manipulating bacterial physiological activities

WATER RESEARCH

IF12.4

2024-06-01

PREAI

Zhu, Shuang; Tan, Zhijie; Guo, Ziyu; Zheng, Huijian; Zhang, Baoshan; Qin, Zhi; Xie, Junting; Lin, Yuexia; Sheng, Binbin; Qiu, Guanglei; Preis, Sergei; Wei, Chaohai

The origin of different bending stiffness between double-stranded RNA and DNA revealed by magnetic tweezers and simulations 磁性镊子和模拟揭示的双链RNA和DNA之间不同弯曲刚度的起源

NUCLEIC ACIDS RESEARCH

IF13.1

2024-02-07

OAAI

Dong, Hai-Long; Zhang, Chen; Dai, Liang; Zhang, Yan; Zhang, Xing-Hua; Tan, Zhi-Jie

Comparative and phylogenetic analysis of the complete chloroplast genomes of Uncaria (Rubiaceae) species Uncaria (茜草科) 物种完整叶绿体基因组的比较和系统发育分析

FRONTIERS IN PLANT SCIENCE

IF4.8

2023-12-22

OAAI

Dai, Jiangpeng; Liu, Qiaozhen; Xu, Xingyuan; Tan, Zhijie; Lin, Yuexia; Gao, Xiaoxia; Zhu, Shuang

RNA 3D Structure Prediction: Progress and Perspective

MOLECULES

IF4.6

2023-07-20

OAAI

Wang, Xunxun; Yu, Shixiong; Lou, En; Tan, Ya-Lan; Tan, Zhi-Jie

Universality in RNA and DNA deformations induced by salt, temperature change, stretching force, and protein binding

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2023-05-08

OAAI

Tian, Fu-Jia; Zhang, Chen; Zhou, Erchi; Dong, Hai-Long; Tan, Zhi-Jie; Zhang, Xing-Hua; Dai, Liang; Ha, Taekjip

Predicting 3D structures and stabilities for complex RNA pseudoknots in ion solutions

BIOPHYSICAL JOURNAL

IF3.1

2023-04-01

PREAI

Wang, Xunxun; Tan, Ya-Lan; Yu, Shixiong; Shi, Ya-Zhou; Tan, Zhi-Jie

cgRNASP: coarse-grained statistical potentials with residue separation for RNA structure evaluation

genomics proteomics bioinformatics

IF2.8

2023-03-03

OAAI

Tan, Ya-Lan; Wang, Xunxun; Yu, Shixiong; Zhang, Bengong; Tan, Zhi-Jie

5-Methyl-cytosine stabilizes DNA but hinders DNA hybridization revealed by magnetic tweezers and simulations 5-甲基胞嘧啶稳定了DNA，但阻碍了磁性镊子和模拟揭示的DNA杂交

NUCLEIC ACIDS RESEARCH

IF13.1

2022-12-07

OAAI

Zhao, Xiao-Cong; Dong, Hai-Long; Li, Xiao-Lu; Yang, Hong-Yu; Chen, Xue-Feng; Dai, Liang; Wu, Wen-Qiang; Tan, Zhi-Jie; Zhang, Xing-Hua

FebRNA: An automated fragment-ensemble-based model for building RNA 3D structures

BIOPHYSICAL JOURNAL

IF3.1

2022-09-01

OAAI

Zhou, Li; Wang, Xunxun; Yu, Shixiong; Tan, Ya-Lan; Tan, Zhi-Jie

Twist-diameter coupling drives DNA twist changes with salt and temperature

SCIENCE ADVANCES

IF12.5

2022-03-25

OAAI

Zhang, Chen; Tian, Fujia; Lu, Ying; Yuan, Bing; Tan, Zhi-Jie; Zhang, Xing-Hua; Dai, Liang

rsRNASP: A residue-separation-based statistical potential for RNA 3D structure evaluation

BIOPHYSICAL JOURNAL

IF3.1

2022-01-01

OAAI

Tan, Ya-Lan; Wang, Xunxun; Shi, Ya-Zhou; Zhang, Wenbing; Tan, Zhi-Jie

Salt-Dependent RNA Pseudoknot Stability: Effect of Spatial Confinement

FRONTIERS IN MOLECULAR BIOSCIENCES

IF4

2021-04-13

OAAI

Feng, Chenjie; Tan, Ya-Lan; Cheng, Yu-Xuan; Shi, Ya-Zhou; Tan, Zhi-Jie

研究方向

RNA、RNA-小分子/蛋白质复合体三维结构评估势能函数及其程序包发展RNA三维结构的理性序列设计模型及其程序包RNA二级结构预测RNA二级结构序列设计发展基于物理的RNA三维结构折叠模型及其程序包发展RNA三维结构组装模型和RNA三维结构优化模型及其程序包利用计算机模拟，预测和理解核酸结构及其动态性与其功能的关系

合作学者

合作期刊