Lingxi Chen - Publications, H-index & Citations

Lingxi Chen

City University of Hong Kong

14H指数

92论文数

1.1K被引数

收录论文 36

发表时间

Charting critical transient gene interactions in disease progression across bulk, single-cell, and spatial transcriptomics 在疾病进展过程中，通过全基因组、单细胞和空间转录组学绘制关键瞬时基因相互作用图谱

Genome Biology

IF9.4

2026-09-17

OAAI

Chengshang Lyu; Anna Jiang; Ka Ho Ng; Xiaoyu Liu; Xiaoping Liu; Lingxi Chen

CNAScope: pan-cancer copy number aberration database with functional annotation and interactive visualization CNAScope：一个具有功能注释和交互式可视化的泛癌种拷贝数异常数据库

NUCLEIC ACIDS RESEARCH

IF13.1

2025-11-01

OAAI

Feng, Xikang; Zheng, Jieyi; Peng, Sisi; Jiang, Anna; Ng, Ka Ho; Lyu, Chengshang; Jin, Qiangguo; Chen, Lingxi

LncRNA THUMPD3-AS1 Regulates Behavioral and Synaptic Structural Abnormalities in Schizophrenia via miR-485-5p and ARHGAP8 长链非编码RNA THUMPD3-AS1通过miR-485-5p和ARHGAP8调节精神分裂症中的行为和突触结构异常

Advanced Science

IF14.1

2025-10-30

OAAI

Xiaojuan Gong; Lingxi Chen; Xin Guo; Anna Jiang; Yayi He; Chunxia Yan; Liang Ma; Jiayang Gao; Jinyu Zhang; Bao Zhang

CropARNet: A deep learning framework for crop genomic prediction with attention and residual modules CropARNet：一种带有注意力和残差模块的作物基因组预测深度学习框架

CROP DESIGN

IF0

2025-09-01

OAAI

Zhou, Shuchang; Cheng, Ke; Lv, Lei; Jiang, Jiamei; Zhou, Shusheng; Zhou, Yanda; Xu, Zhitao; Huang, Qixiang; Yang, Huankun; Chen, Lingxi; Xu, Yuzhe; Yao, Zhangliang; Zhao, Ting

Decision-making experience for second donation in unrelated hematopoietic stem cell donors: a descriptive qualitative study 无血缘关系造血干细胞捐赠者第二次捐赠的决策经验：一项描述性定性研究

Journal of Cancer Survivorship

IF2.9

2025-08-30

PREAI

Hangting Li; Lingxi Chen; Dijiong Wu; Jiayin Ruan; Xiaolian Wu

Deacetylation of ANXA2 by SIRT2 desensitizes hepatocellular carcinoma cells to donafenib via promoting protective autophagy SIRT2介导的ANXA2去乙酰化通过促进保护性自噬使肝细胞癌细胞对达沙替尼产生脱敏作用

CELL DEATH AND DIFFERENTIATION

IF15.4

2025-05-03

PREAI

Sun, Liangbo; He, Meng; Liu, Dong; Shan, Meihua; Chen, Lingxi; Yang, Mingzhen; Dai, Xufang; Yao, Jie; Li, Tao; Zhang, Yan; Zhang, Yang; Xiang, Li; Chen, An; Hao, Yingxue; He, Fengtian; Xiong, Haojun; Lian, Jiqin

Topology entropy: Enhancing graph partitioning for TAD identification and single-cell clustering 拓扑熵：增强图划分以识别TAD和单细胞聚类

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL

IF4.1

2025-01-01

OAAI

Liang, Qiushi; Zhao, Shengjie; Chen, Lingxi; Li, Shuai Cheng

Identifying T-cell clubs by embracing the local harmony between TCR and gene expressions

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2024-11-04

PREAI

Zou, Yiping; Luo, Jiaqi; Chen, Lingxi; Wang, Xueying; Liu, Wei; Wang, Ruo Han; Li, Shuai Cheng

Detecting tipping points of complex diseases by network information entropy

BRIEFINGS IN BIOINFORMATICS

IF7.7

2024-07-03

OAAI

Lyu, Chengshang; Chen, Lingxi; Liu, Xiaoping

A novel deep generative model for mRNA vaccine development: Designing 5' UTRs with N1-methyl-pseudouridine modification

ACTA PHARMACEUTICA SINICA B

IF14.6

2024-04-01

OAAI

Tang, Xiaoshan; Huo, Miaozhe; Chen, Yuting; Huang, Hai; Qin, Shugang; Luo, Jiaqi; Qin, Zeyi; Jiang, Xin; Liu, Yongmei; Duan, Xing; Wang, Ruohan; Chen, Lingxi; Li, Hao; Fan, Na; He, Zhongshan; He, Xi; Shen, Bairong; Li, Shuai Cheng; Song, Xiangrong

Deciphering complex breakage-fusion-bridge genome rearrangements with Ambigram

NATURE COMMUNICATIONS

IF15.7

2023-09-08

OAAI

Li, Chaohui; Chen, Lingxi; Pan, Guangze; Zhang, Wenqian; Li, Shuai Cheng

SpecHLA enables full-resolution HLA typing from sequencing data

CELL REPORTS METHODS

IF4.5

2023-09-01

OAAI

Wang, Shuai; Wang, Mengyao; Chen, Lingxi; Pan, Guangze; Wang, Yanfei; Li, Shuai Cheng

Heterogeneity in lung cancers by single-cell DNA sequencing

CLINICAL AND TRANSLATIONAL MEDICINE

IF6.8

2023-08-30

OAAI

Zhang, Li; Chen, Lingxi; Li, Shuai Cheng; Wang, Mengyao; Li, Chaohui; Song, Tingting; Ni, Yinyun; Yang, Ying; Liu, Zhiqiang; Yao, Menglin; Shen, Bairong; Li, Weimin

Alterations in nutrient digestion and utilization associated with different residual feed intake in Hu sheep

ANIMAL NUTRITION

IF7.5

2023-06-01

OAAI

Zeng, Hongbo; Yin, Yuyang; Chen, Lingxi; Xu, Zhuoxin; Luo, Yang; Wang, Qian; Yang, Bin; Wang, Jiakun

Quantitative annotations of T-Cell repertoire specificity

BRIEFINGS IN BIOINFORMATICS

IF7.7

2023-05-05

OAAI

Luo, Jiaqi; Wang, Xueying; Zou, Yiping; Chen, Lingxi; Liu, Wei; Zhang, Wei; Li, Shuai Cheng

Novel Genetic Risk and Metabolic Signatures of Insulin Signaling and Androgenesis in the Anovulation of Polycystic Ovary Syndrome

ENGINEERING

IF11.6

2023-04-01

OAAI

Wu, Xiaoke; Wang, Chi Chiu; Cao, Yijuan; Li, Jian; Li, Zhiqiang; Ma, Hongli; Gao, Jingshu; Chang, Hui; Zhang, Duojia; Cong, Jing; Wang, Yu; Wu, Qi; Han, Xiaoxiao; Chung, Pui Wah Jacqueline; Li, Yiran; Zheng, Xu; Chen, Lingxi; Zeng, Lin; Borchert, Astrid; Kuhn, Hartmut; Chen, Zi-Jiang; Ng, Ernest Hung Yu; Stener-Victorin, Elisabet; Zhang, Heping; Legro, Richard S.; Mol, Ben Willem J.; Shi, Yongyong

SMURF: embedding single-cell RNA-seq data with matrix factorization preserving self-consistency SMURF: 用矩阵分解嵌入单细胞rna-seq数据，保持自洽

BRIEFINGS IN BIOINFORMATICS

IF7.7

2023-01-28

OAAI

Pu, Juhua; Wang, Bingchen; Liu, Xingwu; Chen, Lingxi; Li, Shuai Cheng

eSMC: a statistical model to infer admixture events from individual genomics data

BMC GENOMICS

IF3.7

2022-12-14

OAAI

Wang, Yonghui; Zhao, Zicheng; Miao, Xinyao; Wang, Yinan; Qian, Xiaobo; Chen, Lingxi; Wang, Changfa; Li, Shuaicheng

TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization

NUCLEIC ACIDS RESEARCH

IF13.1

2022-11-18

OAAI

Wang, Xueying; Chen, Lingxi; Liu, Wei; Zhang, Yuanzheng; Liu, Dawei; Zhou, Chenxin; Shi, Shuai; Dong, Jiajie; Lai, Zhengtao; Zhao, Bingran; Zhang, Wenjingyu; Cheng, Haoyue; Li, Shuaicheng

Incorporating cell hierarchy to decipher the functional diversity of single cells

NUCLEIC ACIDS RESEARCH

IF13.1

2022-11-14

OAAI

Chen, Lingxi; Li, Shuai Cheng

研究方向