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Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study 区分蛋白质复合物结构中的生理与非生理界面: 一项社区范围的研究 Schweke, Hugo; Xu, Qifang; Tauriello, Gerardo; Pantolini, Lorenzo; Schwede, Torsten; Cazals, Frederic; Lheritier, Alix; Fernandez-Recio, Juan; Rodriguez-Lumbreras, Luis Angel; Schueler-Furman, Ora; Varga, Julia. K. K.; Jimenez-Garcia, Brian; Reau, Manon F.; Bonvin, Alexandre M. J. J.; Savojardo, Castrense; Martelli, Pier-Luigi; Casadio, Rita; Tubiana, Jerome; Wolfson, Haim. J. J.; Oliva, Romina; Barradas-Bautista, Didier; Ricciardelli, Tiziana; Cavallo, Luigi; Venclovas, Ceslovas; Olechnovic, Kliment; Guerois, Raphael; Andreani, Jessica; Martin, Juliette; Wang, Xiao; Terashi, Genki; Sarkar, Daipayan; Christoffer, Charles; Aderinwale, Tunde; Verburgt, Jacob; Kihara, Daisuke; Marchand, Anthony; Correia, Bruno E.; Duan, Rui; Qiu, Liming; Xu, Xianjin; Zhang, Shuang; Zou, Xiaoqin; Dey, Sucharita; Dunbrack, Roland L.; Levy, Emmanuel D.; Wodak, Shoshana J. 分享 收藏
Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment 蛋白质组装的预测，下一个前沿: CASP14-CAPRI实验 Lensink, Marc F.; Brysbaert, Guillaume; Mauri, Theo; Nadzirin, Nurul; Velankar, Sameer; Chaleil, Raphael A. G.; Clarence, Tereza; Bates, Paul A.; Kong, Ren; Liu, Bin; Yang, Guangbo; Liu, Ming; Shi, Hang; Lu, Xufeng; Chang, Shan; Roy, Raj S.; Quadir, Farhan; Liu, Jian; Cheng, Jianlin; Antoniak, Anna; Czaplewski, Cezary; Gieldon, Artur; Kogut, Mateusz; Lipska, Agnieszka G.; Liwo, Adam; Lubecka, Emilia A.; Maszota-Zieleniak, Martyna; Sieradzan, Adam K.; Slusarz, Rafal; Wesolowski, Patryk A.; Zieba, Karolina; Del Carpio Munoz, Carlos A.; Ichiishi, Eiichiro; Harmalkar, Ameya; Gray, Jeffrey J.; Bonvin, Alexandre M. J. J.; Ambrosetti, Francesco; Vargas Honorato, Rodrigo; Jandova, Zuzana; Jimenez-Garcia, Brian; Koukos, Panagiotis I.; Van Keulen, Siri; Van Noort, Charlotte W.; Reau, Manon; Roel-Touris, Jorge; Kotelnikov, Sergei; Padhorny, Dzmitry; Porter, Kathryn A.; Alekseenko, Andrey; Ignatov, Mikhail; Desta, Israel; Ashizawa, Ryota; Sun, Zhuyezi; Ghani, Usman; Hashemi, Nasser; Vajda, Sandor; Kozakov, Dima; Rosell, Mireia; Rodriguez-Lumbreras, Luis A.; Fernandez-Recio, Juan; Karczynska, Agnieszka; Grudinin, Sergei; Yan, Yumeng; Li, Hao; Lin, Peicong; Huang, Sheng-You; Christoffer, Charles; Terashi, Genki; Verburgt, Jacob; Sarkar, Daipayan; Aderinwale, Tunde; Wang, Xiao; Kihara, Daisuke; Nakamura, Tsukasa; Hanazono, Yuya; Gowthaman, Ragul; Guest, Johnathan D.; Yin, Rui; Taherzadeh, Ghazaleh; Pierce, Brian G.; Barradas-Bautista, Didier; Cao, Zhen; Cavallo, Luigi; Oliva, Romina; Sun, Yuanfei; Zhu, Shaowen; Shen, Yang; Park, Taeyong; Woo, Hyeonuk; Yang, Jinsol; Kwon, Sohee; Won, Jonghun; Seok, Chaok; Kiyota, Yasuomi; Kobayashi, Shinpei; Harada, Yoshiki; Takeda-Shitaka, Mayuko; Kundrotas, Petras J.; Singh, Amar; Vakser, Ilya A.; Dapkunas, Justas; Olechnovic, Kliment; Venclovas, Ceslovas; Duan, Rui; Qiu, Liming; Xu, Xianjin; Zhang, Shuang; Zou, Xiaoqin; Wodak, Shoshana J. 分享 收藏
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INI1/SMARCB1 Rpt1 domain mimics TAR RNA in binding to integrase to facilitate HIV-1 replication Dixit, Updesh; Bhutoria, Savita; Wu, Xuhong; Qiu, Liming; Spira, Menachem; Mathew, Sheeba; Harris, Richard; Adams, Lucas J.; Cahill, Sean; Pathak, Rajiv; Kumar, P. Rajesh; Nguyen, Minh; Acharya, Seetharama A.; Brenowitz, Michael; Almo, Steven C.; Zou, Xiaoqin; Steven, Alasdair C.; Cowburn, David; Girvin, Mark; Kalpana, Ganjam, V 分享 收藏
The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity Song, Zhenwei; Gremminger, Thomas; Singh, Gatikrushna; Cheng, Yi; Li, Jun; Qiu, Liming; Ji, Juan; Lange, Margaret J.; Zuo, Xiaobing; Chen, Shi-Jie; Zou, Xiaoqin; Boris-Lawrie, Kathleen; Heng, Xiao 分享 收藏
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Structural basis of prostate-specific membrane antigen recognition by the A9g RNA aptamer Ptacek, Jakub; Zhang, Dong; Qiu, Liming; Kruspe, Sven; Motlova, Lucia; Kolenko, Petr; Novakova, Zora; Shubham, Shambhavi; Havlinova, Barbora; Baranova, Petra; Chen, Shi-Jie; Zou, Xiaoqin; Giangrande, Paloma; Barinka, Cyril 分享 收藏
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Binding interface and impact on protease cleavage for an RNA aptamer to HIV-1 reverse transcriptase Nguyen, Phuong D. M.; Zheng, Jie; Gremminger, Thomas J.; Qiu, Liming; Zhang, Dong; Tuske, Steve; Lange, Margaret J.; Griffin, Patrick R.; Arnold, Eddy; Chen, Shi-Jie; Zou, Xiaoqin; Heng, Xiao; Burke, Donald H. 分享 收藏
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment Lensink, Marc F.; Brysbaert, Guillaume; Nadzirin, Nurul; Velankar, Sameer; Chaleil, Raphael A. G.; Gerguri, Tereza; Bates, Paul A.; Laine, Elodie; Carbone, Alessandra; Grudinin, Sergei; Kong, Ren; Liu, Ran-Ran; Xu, Xi-Ming; Shi, Hang; Chang, Shan; Eisenstein, Miriam; Karczynska, Agnieszka; Czaplewski, Cezary; Lubecka, Emilia; Lipska, Agnieszka; Krupa, Pawel; Mozolewska, Magdalena; Golon, Lukasz; Samsonov, Sergey; Liwo, Adam; Crivelli, Silvia; Pages, Guillaume; Karasikov, Mikhail; Kadukova, Maria; Yan, Yumeng; Huang, Sheng-You; Rosell, Mireia; Rodriguez-Lumbreras, Luis A.; Romero-Durana, Miguel; Diaz-Bueno, Lucia; Fernandez-Recio, Juan; Christoffer, Charles; Terashi, Genki; Shin, Woong-Hee; Aderinwale, Tunde; Maddhuri Venkata Subraman, Sai Raghavendra; Kihara, Daisuke; Kozakov, Dima; Vajda, Sandor; Porter, Kathryn; Padhorny, Dzmitry; Desta, Israel; Beglov, Dmitri; Ignatov, Mikhail; Kotelnikov, Sergey; Moal, Iain H.; Ritchie, David W.; de Beauchene, Isaure Chauvot; Maigret, Bernard; Devignes, Marie-Dominique; Echartea, Maria E. Ruiz; Barradas-Bautista, Didier; Cao, Zhen; Cavallo, Luigi; Oliva, Romina; Cao, Yue; Shen, Yang; Baek, Minkyung; Park, Taeyong; Woo, Hyeonuk; Seok, Chaok; Braitbard, Merav; Bitton, Lirane; Scheidman-Duhovny, Dina; Dapkunas, Justas; Olechnovic, Kliment; Venclovas, Ceslovas; Kundrotas, Petras J.; Belkin, Saveliy; Chakravarty, Devlina; Badal, Varsha D.; Vakser, Ilya A.; Vreven, Thom; Vangaveti, Sweta; Borrman, Tyler; Weng, Zhiping; Guest, Johnathan D.; Gowthaman, Ragul; Pierce, Brian G.; Xu, Xianjin; Duan, Rui; Qiu, Liming; Hou, Jie; Merideth, Benjamin Ryan; Ma, Zhiwei; Cheng, Jianlin; Zou, Xiaoqin; Koukos, Panos I.; Roel-Touris, Jorge; Ambrosetti, Francesco; Geng, Cunliang; Schaarschmidt, Jorg; Trellet, Mikael E.; Melquiond, Adrien S. J.; Xue, Li; Jimenez-Garcia, Brian; van Noort, Charlotte W.; Honorato, Rodrigo V.; Bonvin, Alexandre M. J. J.; Wodak, Shoshana J. 分享 收藏
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Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment 通过蛋白质对接和基于模板的建模预测同蛋白和异蛋白复合物: casp-capri实验 Lensink, Marc F.; Velankar, Sameer; Kryshtafovych, Andriy; Huang, Shen-You; Schneidman-Duhovny, Dina; Sali, Andrej; Segura, Joan; Fernandez-Fuentes, Narcis; Viswanath, Shruthi; Elber, Ron; Grudinin, Sergei; Popov, Petr; Neveu, Emilie; Lee, Hasup; Baek, Minkyung; Park, Sangwoo; Heo, Lim; Lee, Gyu Rie; Seok, Chaok; Qin, Sanbo; Zhou, Huan-Xiang; Ritchie, David W.; Maigret, Bernard; Devignes, Marie-Dominique; Ghoorah, Anisah; Torchala, Mieczyslaw; Chaleil, Raphael A. G.; Bates, Paul A.; Ben-Zeev, Efrat; Eisenstein, Miriam; Negi, Surendra S.; Weng, Zhiping; Vreven, Thom; Pierce, Brian G.; Borrman, Tyler M.; Yu, Jinchao; Ochsenbein, Francoise; Guerois, Raphael; Vangone, Anna; Rodrigues, Joao P. G. L. M.; van Zundert, Gydo; Nellen, Mehdi; Xue, Li; Karaca, Ezgi; Melquiond, Adrien S. J.; Visscher, Koen; Kastritis, Panagiotis L.; Bonvin, Alexandre M. J. J.; Xu, Xianjin; Qiu, Liming; Yan, Chengfei; Li, Jilong; Ma, Zhiwei; Cheng, Jianlin; Zou, Xiaoqin; Shen, Yang; Peterson, Lenna X.; Kim, Hyung-Rae; Roy, Amit; Han, Xusi; Esquivel-Rodriguez, Juan; Kihara, Daisuke; Yu, Xiaofeng; Bruce, Neil J.; Fuller, Jonathan C.; Wade, Rebecca C.; Anishchenko, Ivan; Kundrotas, Petras J.; Vakser, Ilya A.; Imai, Kenichiro; Yamada, Kazunori; Oda, Toshiyuki; Nakamura, Tsukasa; Tomii, Kentaro; Pallara, Chiara; Romero-Durana, Miguel; Jimenez-Garcia, Brian; Moal, Iain H.; Fernandez-Recio, Juan; Joung, Jong Young; Kim, Jong Yun; Joo, Keehyoung; Lee, Jooyoung; Kozakov, Dima; Vajda, Sandor; Mottarella, Scott; Hall, David R.; Beglov, Dmitri; Mamonov, Artem; Xia, Bing; Bohnuud, Tanggis; Del Carpio, Carlos A.; Ichiishi, Eichiro; Marze, Nicholas; Kuroda, Daisuke; Burman, Shourya S. Roy; Gray, Jeffrey J.; Chermak, Edrisse; Cavallo, Luigi; Oliva, Romina; Tovchigrechko, Andrey; Wodak, Shoshana J. 分享 收藏
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