Timothy Durham - Publications, H-index & Citations

Timothy Durham

massachusetts general hospital

17H指数

40论文数

9.7K被引数

收录论文 13

发表时间

Himito: a graph-based toolkit for mitochondrial genome analysis using long reads Himito：一种基于图的方法用于长读长线粒体基因组分析的工具包

Nature Communications

IF15.7

2026-09-10

OAAI

Hang Su; Yongqing Huang; Timothy J. Durham; Nahyun Kong; Emma Casey; David Benjamin; Sheng Chih Jin; Kiran V. Garimella

Hypoxia ameliorates neurodegeneration and movement disorder in a mouse model of Parkinson’s disease 缺氧可改善帕金森病小鼠模型中的神经退行性变和运动障碍。

Nature Neuroscience

IF20

2025-08-06

OAAI

Eizo Marutani; Maria Miranda; Timothy J. Durham; Sharon H. Kim; Dreson L. Russell; Presli P. Wiesenthal; Paul Lichtenegger; Marissa A. Menard; Charlotte F. Brzozowski; Haobo Li; Gary Ruvkun; Joshua D. Meisel; Laura Volpicelli-Daley; Vamsi K. Mootha; Fumito Ichinose

Nuclear genetic control of mtDNA copy number and heteroplasmy in humans (vol 620, pg 839, 2023)人类线粒体DNA拷贝数和异质性核遗传调控（vol 620, pg 839, 2023）

NATURE

IF48.5

2024-06-03

OAAI

Gupta, Rahul; Kanai, Masahiro; Durham, Timothy J.; Tsuo, Kristin; McCoy, Jason G.; Kotrys, Anna V.; Zhou, Wei; Chinnery, Patrick F.; Karczewski, Konrad J.; Calvo, Sarah E.; Neale, Benjamin M.; Mootha, Vamsi K.

Circulating N-lactoyl-amino acids and N-formyl-methionine reflect mitochondrial dysfunction and predict mortality in septic shock 循环N-乳酰氨基酸和N-甲酰蛋氨酸反映线粒体功能障碍并预测脓毒症休克的死亡率

METABOLOMICS

IF3.3

2024-03-06

OAAI

Rogers, Robert S.; Sharma, Rohit; Shah, Hardik B.; Skinner, Owen S.; Guo, Xiaoyan A.; Panda, Apekshya; Gupta, Rahul; Durham, Timothy J.; Shaughnessy, Kelsey B.; Mayers, Jared R.; Hibbert, Kathryn A.; Baron, Rebecca M.; Thompson, B. Taylor; Mootha, Vamsi K.

Matrix prior for data transfer between single cell data types in latent Dirichlet allocation

plos biology

IF3.6

2023-05-05

OAAI

Min, Alan; Durham, Timothy; Gevirtzman, Louis; Noble, William Stafford

Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome (vol 21, 81, 2020)

GENOME BIOLOGY

IF9.4

2021-09-03

OAAI

Schreiber, Jacob; Durham, Timothy; Bilmes, Jeffrey; Noble, William Stafford

Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

GENOME RESEARCH

IF5.5

2021-04-22

OAAI

Durham, Timothy J.; Daza, Riza M.; Gevirtzman, Louis; Cusanovich, Darren A.; Bolonduro, Olubusayo; Noble, William Stafford; Shendure, Jay; Waterston, Robert H.

MitoCarta3.0: an updated mitochondrial proteome now with sub-organelle localization and pathway annotations MitoCarta3.0: 具有亚细胞器定位和途径注释的更新的线粒体蛋白质组

NUCLEIC ACIDS RESEARCH

IF13.1

2020-11-11

797

OAAI

Rath, Sneha; Sharma, Rohit; Gupta, Rahul; Ast, Tslil; Chan, Connie; Durham, Timothy J.; Goodman, Russell P.; Grabarek, Zenon; Haas, Mary E.; Hung, Wendy H. W.; Joshi, Pallavi R.; Jourdain, Alexis A.; Kim, Sharon H.; Kotrys, Anna, V; Lam, Stephanie S.; McCoy, Jason G.; Meisel, Joshua D.; Miranda, Maria; Panda, Apekshya; Patgiri, Anupam; Rogers, Robert; Sadre, Shayan; Shah, Hardik; Skinner, Owen S.; To, Tsz-Leung; Walker, Melissa A.; Wang, Hong; Ward, Patrick S.; Wengrod, Jordan; Yuan, Chen-Ching; Calvo, Sarah E.; Mootha, Vamsi K.

Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome

GENOME BIOLOGY

IF9.4

2020-03-30

OAAI

Schreiber, Jacob; Durham, Timothy; Bilmes, Jeffrey; Noble, William Stafford

Inferring Causal Gene Regulatory Networks from Coupled Single-Cell Expression Dynamics Using Scribe

CELL SYSTEMS

IF7.7

2020-03-01

OAAI

Qiu, Xiaojie; Rahimzamani, Arman; Wang, Li; Ren, Bingcheng; Mao, Qi; Durham, Timothy; McFaline-Figueroa, Jose L.; Saunders, Lauren; Trapnell, Cole; Kannan, Sreeram

Functional characterization of enhancer evolution in the primate lineage

GENOME BIOLOGY

IF9.4

2018-07-25

OAAI

Klein, Jason C.; Keith, Aidan; Agarwal, Vikram; Durham, Timothy; Shendure, Jay

PREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition

NATURE COMMUNICATIONS

IF15.7

2018-04-11

OAAI

Durham, Timothy J.; Libbrecht, Maxwell W.; Howbert, J. Jeffry; Bilmes, Jeff; Noble, William Stafford

The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors 现代资源: 数百种果蝇和秀丽隐杆线虫转录因子的全基因组结合谱

GENETICS

IF5.1

2018-03-01

140

OAAI

Kudron, Michelle M.; Victorsen, Alec; Gevirtzman, Louis; Hillier, LaDeana W.; Fisher, William W.; Vafeados, Dionne; Kirkey, Matt; Hammonds, Ann S.; Gersch, Jeffery; Ammouri, Haneen; Wall, Martha L.; Moran, Jennifer; Steffen, David; Szynkarek, Matt; Seabrook-Sturgis, Samantha; Jameel, Nader; Kadaba, Madhura; Patton, Jaeda; Terrell, Robert; Corson, Mitch; Durham, Timothy J.; Park, Soo; Samanta, Swapna; Han, Mei; Xu, Jinrui; Yan, Koon-Kiu; Celniker, Susan E.; White, Kevin P.; Ma, Lijia; Gerstein, Mark; Reinke, Valerie; Waterston, Robert H.

研究方向