Ondřej Vávra - Publications, H-index & Citations

Ondřej Vávra

Masaryk University

10H指数

44论文数

664被引数

收录论文 11

发表时间

Molecular trick to reverse SN2 step in a haloalkane dehalogenase 卤代烷脱卤酶中逆转SN2步骤的分子策略

Chem Catalysis

IF11.6

2026-03-30

PREAI

Martin Toul; Sérgio M. Marques; Tadeja Gao; Hana Bernhardova; Ondrej Vavra; Veronika Novakova; Jiri Damborsky; David Bednar; Zbynek Prokop; Martin Marek

Caver Web 2.0: analysis of tunnels and ligand transport in dynamic ensembles of proteins Caver Web 2.0：蛋白质动态集合中通道和配体转运的分析

NUCLEIC ACIDS RESEARCH

IF13.1

2025-05-08

OAAI

Marques, Sergio M.; Borko, Simeon; Vavra, Ondrej; Dvorsky, Jan; Kohout, Petr; Kabourek, Petr; Hejtmanek, Lukas; Damborsky, Jiri

Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme-ligand complexes 同源酶-配体复合物中生化相关口袋和隧道的大规模注释

JOURNAL OF CHEMINFORMATICS

IF5.7

2024-10-15

OAAI

Vavra, O.; Tyzack, J.; Haddadi, F.; Stourac, J.; Damborsky, J.; Mazurenko, S.; Thornton, J. M.; Bednar, D.

ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era

NUCLEIC ACIDS RESEARCH

IF13.1

2023-11-13

OAAI

Spackova, Anna; Vavra, Ondrej; Racek, Tomas; Bazgier, Vaclav; Sehnal, David; Damborsky, Jiri; Svobodova, Radka; Bednar, David; Berka, Karel

Fast approximative methods for study of ligand transport and rational design of improved enzymes for biotechnologies

BIOTECHNOLOGY ADVANCES

IF12.5

2022-11-01

OAAI

Vavra, Ondrej; Damborsky, Jiri; Bednar, David

CaverDock: A Novel Method for the Fast Analysis of Ligand Transport

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2020-09-01

OAAI

Filipovic, Jiri; Vavra, Ondrej; Plhak, Jan; Bednar, David; Marques, Sergio M.; Brezovsky, Jan; Matyska, Ludek; Damborsky, Jiri

Caver web: identification of tunnels and channels in proteins and analysis of ligand transport

JOURNAL OF BIOTECHNOLOGY

IF3.9

2019-11-01

OAAI

Stourac, J.; Vavra, O.; Kokkonen, P.; Filipovic, J.; Pinto, G.; Schenkmayerova, A.; Damborsky, J.; Bednar, D.

Fast Screening of Inhibitor Binding/Unbinding Using Novel Software Tool CaverDock

FRONTIERS IN CHEMISTRY

IF4.2

2019-10-29

OAAI

Pinto, Gaspar P.; Vavra, Ondrej; Filipovic, Jiri; Stourac, Jan; Bednar, David; Damborsky, Jiri

Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport

NUCLEIC ACIDS RESEARCH

IF13.1

2019-05-22

158

OAAI

Stourac, Jan; Vavra, Ondrej; Kokkonen, Piia; Filipovic, Jiri; Pinto, Gaspar; Brezovsky, Jan; Damborsky, Jiri; Bednar, David

A Haloalkane Dehalogenase from a Marine Microbial Consortium Possessing Exceptionally Broad Substrate Specificity

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2018-01-15

OAAI

Buryska, Tomas; Babkova, Petra; Vavra, Ondrej; Damborsky, Jiri; Prokop, Zbynek

HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering

NUCLEIC ACIDS RESEARCH

IF13.1

2016-05-12

OAAI

Bendl, Jaroslav; Stourac, Jan; Sebestova, Eva; Vavra, Ondrej; Musil, Milos; Brezovsky, Jan; Damborsky, Jiri

研究方向