Loïc Paulevé - Publications, H-index & Citations

Loïc Paulevé

centre national de la recherche scientifique (cnrs)

19H指数

143论文数

1.6K被引数

收录论文 16

发表时间

Seed Inference in Interacting Microbial Communities Using Combinatorial Optimization 利用组合优化推断互作微生物群落中的种子菌群

COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY, CMSB 2025

IF0

2026-01-01

PREAI

Nedjad, Chabname Ghassemi; Mendoza, Sebastian Nelson; Frioux, Clemence; Pauleve, Loic

Bringing memory to Boolean networks: A unifying framework 为布尔网络带来记忆: 一个统一的框架

JOURNAL OF COMPUTER AND SYSTEM SCIENCES

IF0.9

2025-11-01

PREAI

Gadouleau, Maximilien; Pauleve, Loic; Riva, Sara

Data-driven inference of Boolean networks from transcriptomes to predict cellular differentiation and reprogramming 基于转录组数据驱动的布尔网络推理，以预测细胞分化和重编程

npj Systems Biology and Applications

IF3.5

2025-09-26

OAAI

Stéphanie Chevalier; Julia Becker; Yujuan Gui; Vincent Noël; Cui Su; Sascha Jung; Laurence Calzone; Andrei Zinovyev; Antonio del Sol; Jun Pang; Lasse Sinkkonen; Thomas Sauter; Loïc Paulevé

Inference of ecological networks and possibilistic dynamics based on Boolean networks from observations and prior knowledge 基于观察和先验知识，从布尔网络推断生态网络和可能性动力学

Methods in Ecology and Evolution

IF6.2

2025-07-03

OAAI

Loïc Paulevé; Cédric Gaucherel

Seed2LP: seed inference in metabolic networks for reverse ecology applications Seed2LP: 用于逆向生态学应用的代谢网络种子推理

BIOINFORMATICS

IF5.4

2025-03-31

OAAI

Nedjad, Chabname Ghassemi; Bolteau, Mathieu; Bourneuf, Lucas; Pauleve, Loic; Frioux, Clemence

BioSimulators: a central registry of simulation engines and services for recommending specific tools BioSimulators: 用于推荐特定工具的模拟引擎和服务的中央注册表

NUCLEIC ACIDS RESEARCH

IF13.1

2022-05-07

OAAI

Shaikh, Bilal; Smith, Lucian P.; Vasilescu, Dan; Marupilla, Gnaneswara; Wilson, Michael; Agmon, Eran; Agnew, Henry; Andrews, Steven S.; Anwar, Azraf; Beber, Moritz E.; Bergmann, Frank T.; Brooks, David; Brusch, Lutz; Calzone, Laurence; Choi, Kiri; Cooper, Joshua; Detloff, John; Drawert, Brian; Dumontier, Michel; Ermentrout, G. Bard; Faeder, James R.; Freiburger, Andrew P.; Frohlich, Fabian; Funahashi, Akira; Garny, Alan; Gennari, John H.; Gleeson, Padraig; Goelzer, Anne; Haiman, Zachary; Hasenauer, Jan; Hellerstein, Joseph L.; Hermjakob, Henning; Hoops, Stefan; Ison, Jon C.; Jahn, Diego; Jakubowski, Henry, V; Jordan, Ryann; Kalas, Matus; Koenig, Matthias; Liebermeister, Wolfram; Sheriff, Rahuman S. Malik; Mandal, Synchon; McDougal, Robert; Medley, J. Kyle; Mendes, Pedro; Mueller, Robert; Myers, Chris J.; Naldi, Aurelien; Nguyen, Tung V. N.; Nickerson, David P.; Olivier, Brett G.; Patoliya, Drashti; Pauleve, Loic; Petzold, Linda R.; Priya, Ankita; Rampadarath, Anand K.; Rohwer, Johann M.; Saglam, Ali S.; Singh, Dilawar; Sinha, Ankur; Snoep, Jacky; Sorby, Hugh; Spangler, Ryan; Starruss, Joern; Thomas, Payton J.; van Niekerk, David; Weindl, Daniel; Zhang, Fengkai; Zhukova, Anna; Goldberg, Arthur P.; Schaff, James C.; Blinov, Michael L.; Sauro, Herbert M.; Moraru, Ion I.; Karr, Jonathan R.

Reconciling qualitative, abstract, and scalable modeling of biological networks (vol 11, 4256, 2020)

NATURE COMMUNICATIONS

IF15.7

2020-09-24

OAAI

Pauleve, Loic; Kolcak, Juraj; Chatain, Thomas; Haar, Stefan

Reconciling qualitative, abstract, and scalable modeling of biological networks

NATURE COMMUNICATIONS

IF15.7

2020-08-26

OAAI

Pauleve, Loic; Kolcak, Juraj; Chatain, Thomas; Haar, Stefan

Algorithms for the Sequential Reprogramming of Boolean Networks 布尔网络顺序重编程的算法

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2019-09-01

OAAI

Mandon, Hugues; Su, Cui; Pang, Jun; Paul, Soumya; Haar, Stefan; Pauleve, Loic

Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

FRONTIERS IN PHYSIOLOGY

IF3.4

2018-07-06

OAAI

Levy, Nicolas; Naldi, Aurelien; Hernandez, Celine; Stoll, Gautier; Thieffry, Denis; Zinovyev, Andrei; Calzone, Laurence; Pauleve, Loic

Reduction of Qualitative Models of Biological Networks for Transient Dynamics Analysis

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2018-07-01

OAAI

Pauleve, Loic

The CoLoMo To Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

FRONTIERS IN PHYSIOLOGY

IF3.4

2018-06-19

OAAI

Naldi, Aurelien; Hernandez, Celine; Levy, Nicolas; Stoll, Gautier; Monteiro, Pedro T.; Chaouiya, Claudine; Helikar, Tomas; Zinovyev, Andrei; Calzone, Laurence; Cohen-Boulakia, Sarah; Thieffry, Denis; Pauleve, Loic

The Redox Status of Cancer Cells Supports Mechanisms behind the Warburg Effect

METABOLITES

IF3.7

2016-10-03

103

OAAI

Moreira, Jorgelindo da Veiga; Hamraz, Minoo; Abolhassani, Mohammad; Bigan, Erwan; Peres, Sabine; Pauleve, Loic; Nogueira, Marcel Levy; Steyaert, Jean-Marc; Schwartz, Laurent

Reconstructing dynamic molecular states from single-cell time series

JOURNAL OF THE ROYAL SOCIETY INTERFACE

IF3.5

2016-09-01

OAAI

Huang, Lirong; Pauleve, Loic; Zechner, Christoph; Unger, Michael; Hansen, Anders S.; Koeppl, Heinz

Tuning Temporal Features within the Stochastic π-Calculus

IEEE TRANSACTIONS ON SOFTWARE ENGINEERING

IF5.6

2011-11-01

OAAI

Pauleve, Loic; Magnin, Morgan; Roux, Olivier