Carlos-Francisco Méndez-Cruz

programa de genomica computacional

7H指数

27论文数

620被引数

收录论文 12

发表时间

Fine-tuned GPT-based foundation models effectively reconstruct bacterial transcriptional regulatory networks from literature 基于GPT的微调基础模型能够有效从文献中重构细菌转录调控网络

Frontiers in Artificial Intelligence

IF4.7

2026-04-13

OAAI

JR José Romero-Vilchis; MB Maximiliano Barajas-Sánchez; KA Karyme-Ivette Azpeitia-García; AP Ali-Berenice Posada-Reyes; JC Julio Collado-Vides; CM Carlos-Francisco Méndez-Cruz

Automatic extraction of transcriptional regulatory interactions of bacteria from biomedical literature using a BERT-based approach

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2024-08-30

OAAI

Varela-Vega, Alfredo; Posada-Reyes, Ali-Berenice; Mendez-Cruz, Carlos-Francisco

Unsupervised learning and natural language processing highlight research trends in a superbug

FRONTIERS IN ARTIFICIAL INTELLIGENCE

IF4.7

2024-03-21

OAAI

Mendez-Cruz, Carlos-Francisco; Rodriguez-Herrera, Joel; Varela-Vega, Alfredo; Mateo-Estrada, Valeria; Castillo-Ramirez, Santiago

RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12

MICROBIAL GENOMICS

IF4

2022-05-27

OAAI

Tierrafria, Victor H.; Rioualen, Claire; Salgado, Heladia; Lara, Paloma; Gama-Castro, Socorro; Lally, Patrick; Gomez-Romero, Laura; Pena-Loredo, Pablo; Lopez-Almazo, Andres G.; Alarcon-Carranza, Gabriel; Betancourt-Figueroa, Felipe; Alquicira-Hernandez, Shirley; Polanco-Morelos, J. Enrique; Garcia-Sotelo, Jair; Gaytan-Nunez, Estefani; Mendez-Cruz, Carlos-Francisco; Muniz, Luis J.; Bonavides-Martinez, Cesar; Moreno-Hagelsieb, Gabriel; Galagan, James E.; Wade, Joseph T.; Collado-Vides, Julio

Knowledge extraction for assisted curation o f summaries of bacterial transcription factor prorerties

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2020-12-11

OAAI

Mendez-Cruz, Carlos-Francisco; Blanchet, Antonio; Godinez, Alan; Arroyo-Fernandez, Ignacio; Gama-Castro, Socorro; Berenice Martinez-Luna, Sara; Gonzalez-Colin, Cristian; Collado-Vides, Julio

Language features in extractive summarization: Humans Vs. Machines 提取式摘要中的语言特征: 人类与机器

KNOWLEDGE-BASED SYSTEMS

IF7.6

2019-09-01

PREAI

Arroyo-Fernandez, Ignacio; Curiel, Arturo; Mendez-Cruz, Carlos-Francisco

Unsupervised sentence representations as word information series: Revisiting TF-IDF

COMPUTER SPEECH AND LANGUAGE

IF3.4

2019-07-01

OAAI

Arroyo-Fernandez, Ignacio; Mendez-Cruz, Carlos-Francisco; Sierra, Gerardo; Torres-Moreno, Juan-Manuel; Sidorov, Grigori

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12

NUCLEIC ACIDS RESEARCH

IF13.1

2018-11-05

280

OAAI

Santos-Zavaleta, Alberto; Salgado, Heladia; Gama-Castro, Socorro; Sanchez-Perez, Mishael; Gomez-Romero, Laura; Ledezma-Tejeida, Daniela; Santiago Garcia-Sotelo, Jair; Alquicira-Hernandez, Kevin; Jose Muniz-Rascado, Luis; Pena-Loredo, Pablo; Ishida-Gutierrez, Cecilia; Velazquez-Ramirez, David A.; Del Moral-Chavez, Victor; Bonavides-Martinez, Cesar; Mendez-Cruz, Carlos-Francisco; Galagan, James; Collado-Vides, Julio

First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2017-09-26

OAAI

Mendez-Cruz, Carlos-Francisco; Gama-Castro, Socorro; Mejia-Almonte, Citlalli; Castillo-Villalba, Marco-Polo; Muniz-Rascado, Luis-Jose; Collado-Vides, Julio

Strategies towards digital and semi-automated curation in RegulonDB (vol 2017, bax012, 2017)

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2017-04-17

OAAI

Rinaldi, Fabio; Lithgow, Oscar; Gama-Castro, Socorro; Solano, Hilda; Lopez-Fuentes, Alejandra; Muniz Rascado, Luis Jose; Ishida-Gutierrez, Cecilia; Mendez-Cruz, Carlos-Francisco; Collado-Vides, Julio

Strategies towards digital and semi-automated curation in RegulonDB

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2017-03-18

OAAI

Rinaldi, Fabio; Lithgow, Oscar; Gama-Castro, Socorro; Solano, Hilda; Lopez, Alejandra; Rascado, Luis Jose Muniz; Ishida-Gutierrez, Cecilia; Mendez-Cruz, Carlos-Francisco; Collado-Vides, Julio

Unsupervised morphological segmentation based on affixality measurements

PATTERN RECOGNITION LETTERS

IF3.3

2016-12-01

PREAI

Mendez-Cruz, Carlos-Francisco; Medina-Urrea, Alfonso; Sierra, Gerardo

研究方向