Andrei L. Lomize - Publications, H-index & Citations

Andrei L. Lomize

university of michigan system

33H指数

83论文数

6.6K被引数

收录论文 31

发表时间

Structural Modeling of Cytokine-Receptor-JAK2 Signaling Complexes Using AlphaFold Multimer

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2023-09-11

OAAI

Pogozheva, Irina D.; Cherepanov, Stanislav; Park, Sang-Jun; Raghavan, Malini; Im, Wonpil; Lomize, Andrei L.

Comparative Molecular Dynamics Simulation Studies of Realistic Eukaryotic, Prokaryotic, and Archaeal Membranes

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2022-02-15

OAAI

Pogozheva, Irina D.; Armstrong, Grant A.; Kong, Lingyang; Hartnagel, Timothy J.; Carpino, Carly A.; Gee, Stephen E.; Picarello, Danielle M.; Rubin, Amanda S.; Lee, Jumin; Park, Soohyung; Lomize, Andrei L.; Im, Wonpil

Thermodynamics-Based Molecular Modeling of α-Helices in Membranes and Micelles

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2021-05-24

PREAI

Lomize, Andrei L.; Schnitzer, Kevin A.; Todd, Spencer C.; Pogozheva, Irina D.

Physics-Based Method for Modeling Passive Membrane Permeability and Translocation Pathways of Bioactive Molecules 基于物理的生物活性分子被动膜通透性和转运途径建模方法

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2019-07-01

OAAI

Lomize, Andrei L.; Pogozheva, Irina D.

PerMM: A Web Tool and Database for Analysis of Passive Membrane Permeability and Translocation Pathways of Bioactive Molecules

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2019-07-01

OAAI

Lomize, Andrei L.; Hage, Jacob M.; Schnitzer, Kevin; Golobokov, Konstantin; LaFaive, Mitchell B.; Forsyth, Alexander C.; Pogozheva, Irina D.

PerMM: Web Server and Database for Prediction of Membrane Permeability and Translocation Pathways of Molecules

BIOPHYSICAL JOURNAL

IF3.1

2018-02-01

OAAI

Pogozheva, Irina D.; Mosberg, Henry I.; Lomize, Andrei

Modeling of Peptide Folding and Translocation across Membranes

BIOPHYSICAL JOURNAL

IF3.1

2018-02-01

OAAI

Lomize, Andrei L.; Pogozheva, Irina

Prediction of Passive Membrane Permeability and Translocation Pathways of Biologically Active Molecules

BIOPHYSICAL JOURNAL

IF3.1

2017-02-01

OAAI

Lomize, Andrei L.; Pogozheva, Irina D.

Proteome-Wide Modeling of Transmembrane Alpha-Helical Homodimers by TMDOCK

BIOPHYSICAL JOURNAL

IF3.1

2017-02-01

OAAI

Lomize, Andrei L.; Pogozheva, Irina D.

Membranome: a database for proteome-wide analysis of single-pass membrane proteins

NUCLEIC ACIDS RESEARCH

IF13.1

2016-08-10

OAAI

Lomize, Andrei L.; Lomize, Mikhail A.; Krolicki, Shean R.; Pogozheva, Irina D.

Evolution and Structural Adaptation to Membranes of Single-Pass Transmembrane Proteins

BIOPHYSICAL JOURNAL

IF3.1

2016-02-01

OAAI

Lomize, Andrei L.; Pogozheva, Irina

Membranome: A Database of Single-Spanning Transmembrane Proteins

BIOPHYSICAL JOURNAL

IF3.1

2015-01-01

OAAI

Lomize, Andrei L.; Pogozheva, Irina

Antimicrobial Action of the Cyclic Peptide Bactenecin on Burkholderia pseudomallei Correlates with Efficient Membrane Permeabilization

PLOS NEGLECTED TROPICAL DISEASES

IF3.4

2013-06-13

OAAI

Madhongsa, Kanjana; Pasan, Supaluk; Phophetleb, Onanong; Nasompag, Sawinee; Thammasirirak, Sompong; Daduang, Sakda; Taweechaisupapong, Suwimol; Lomize, Andrei L.; Patramanon, Rina

Structural Adaptation of Proteins to Different Biological Membranes

BIOPHYSICAL JOURNAL

IF3.1

2013-01-01

OAAI

Pogozheva, Irina D.; Mosberg, Henry I.; Lomize, Andrei L.

Thermodynamic Approach to Large-Scale Modeling of Alpha-Helices in Membranes

BIOPHYSICAL JOURNAL

IF3.1

2012-01-01

OAAI

Lomize, Andrei L.; Mosberg, Henry I.; Pogozheva, Irina D.

OPM database and PPM web server: resources for positioning of proteins in membranes

NUCLEIC ACIDS RESEARCH

IF13.1

2011-09-02

1.5K

OAAI

Lomize, Mikhail A.; Pogozheva, Irina D.; Joo, Hyeon; Mosberg, Henry I.; Lomize, Andrei L.

Anisotropic Solvent Model of the Lipid Bilayer. 1. Parameterization of Long-Range Electrostatics and First Solvation Shell Effects

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2011-03-25

OAAI

Lomize, Andrei L.; Pogozheva, Irina D.; Mosberg, Henry I.

Anisotropic Solvent Model of the Lipid Bilayer. 2. Energetics of Insertion of Small Molecules, Peptides, and Proteins in Membranes

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2011-03-25

136

OAAI

Lomize, Andrei L.; Pogozheva, Irina D.; Mosberg, Henry I.

Positioning of Proteins in Membranes of Variable Lipid Composition

BIOPHYSICAL JOURNAL

IF3.1

2010-01-01

OAAI

Lomize, Andrei L.; Lomize, Mikhail A.; Pogozheva, Irina D.; Mosberg, Henry I.

Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008 GPCR结构建模和配体对接的社区评估: GPCR对接2008

NATURE REVIEWS DRUG DISCOVERY

IF101.8

2009-05-22

259

OAAI

Michino, Mayako; Abola, Enrique; Brooks, Charles L., III; Dixon, J. Scott; Moult, John; Stevens, Raymond C.; Olson, Arthur; Jurkowski, Wiktor; Elofsson, Arne; Filipek, Slawomir; Pogozheva, Irina; Lomize, Andrei; Maigret, Bernard; Horst, Jeremy; Bernard, Brady; Iyer, Shyamala; Samudrala, Ram; Roy, Ambrish; Zhang, Yang; Sezerman, Osman Ugur; Nikiforovich, Gregory V.; Taylor, Christina M.; Costanzi, Stefano; Vorobjev, Y.; Bakulina, N.; Solovyev, V.; Kanou, Kazuhiko; Takaya, Daisuke; Terashi, Genki; Takeda-Shitaka, Mayuko; Umeyama, Hideaki; Goddard, William A., III; Li, Youyong; Kim, Soo-Kyung; Trzaskowski, Bartosz; Abrol, Ravinder; Griffith, Adam; Katritch, Vsevolod; Rueda, Manuel; Davis, Ian; Barth, Patrick; Baker, David; Feig, Michael; Brylinski, Michal; Zhou, Hongyi; Lee, Seung Yup; Skolnick, Jeffrey; Ostopovici-Halip, Liliana; Bologa, Cristian; Lam, Polo; Abagyan, Ruben; Dawson, Eric S.; Kaufmann, Kristian; Woetzel, Nils; Meiler, Jens; Ding, Feng; Serohijos, Adrian; Yin, Shuangye; Dokholyan, Nikolay V.; Rodriguez, David; Gutierrez-de-Teran, Hugo; Xhaard, Henri

研究方向