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Stéfan Engelen

université paris-saclay

25H指数
78论文数
1.1W被引数
收录论文 24
发表时间
From genotype to phenotype with 1,086 near telomere-to-telomere yeast genomes从基因型到表型:利用1,086个近端粒到端粒酵母基因组
errNature
IF48.5
err2025-10-15
err0
errOAAI
errVictor Loegler; Pia Thiele; Elie Teyssonnière; Andreas Tsouris; Gauthier Brach; Corinne Cruaud; Emilie Payen; Stefan Engelen; Maitreya J. Dunham; Jing Hou; Anne Friedrich; Joseph Schacherer
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Nanopore adaptive sampling to identify the NLR gene family in melon (Cucumis melo L.)
err2025-02-10
err0
errOAAI
errBelinchon-Moreno, Javier; Berard, Aurelie; Canaguier, Aurelie; Chovelon, Veronique; Cruaud, Corinne; Engelen, Stefan; Feriche-Linares, Rafael; Le-Clainche, Isabelle; Marande, William; Rittener-Ruff, Vincent; Lagnel, Jacques; Hinsinger, Damien; Boissot, Nathalie; Faivre-Rampant, Patricia
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Genomic Reconstruction of the Successful Establishment of a Feralized Bovine Population on the Subantarctic Island of Amsterdam
err2024-06-18
err0
errOAAI
errGautier, Mathieu; Micol, Thierry; Camus, Louise; Moazami-Goudarzi, Katayoun; Naves, Michel; Gueret, Elise; Engelen, Stefan; Lemainque, Arnaud; Colas, Francois; Flori, Laurence; Druet, Tom
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Genome-wide mapping of individual replication fork velocities using nanopore sequencing
err2022-06-08
err13
errOAAI
errTheulot, Bertrand; Lacroix, Laurent; Arbona, Jean-Michel; Millot, Gael A.; Jean, Etienne; Cruaud, Corinne; Pellet, Jade; Proux, Florence; Hennion, Magali; Engelen, Stefan; Lemainque, Arnaud; Audit, Benjamin; Hyrien, Olivier; Le Tallec, Benoit
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Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding六倍体小麦基因组的长读段和染色体规模组装实现了研究和育种的高分辨率
err2022-04-28
err0
errOAAI
errAury, Jean-Marc; Engelen, Stefan; Istace, Benjamin; Monat, Cecile; Lasserre-Zuber, Pauline; Belser, Caroline; Cruaud, Corinne; Rimbert, Helene; Leroy, Philippe; Arribat, Sandrine; Dufau, Isabelle; Bellec, Arnaud; Grimbichler, David; Papon, Nathan; Paux, Etienne; Ranoux, Marion; Alberti, Adriana; Wincker, Patrick; Choulet, Frederic
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VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity
err2021-11-08
err25
errOAAI
errDenoyelle, Laure; Talouarn, Estelle; Bardou, Philippe; Colli, Licia; Alberti, Adriana; Danchin, Coralie; Del Corvo, Marcello; Engelen, Stefan; Orvain, Celine; Palhiere, Isabelle; Rupp, Rachel; Sarry, Julien; Salavati, Mazdak; Amills, Marcel; Clark, Emily; Crepaldi, Paola; Faraut, Thomas; Masiga, Clet Wandui; Pompanon, Francois; Rosen, Benjamin D.; Stella, Alessandra; Van Tassell, Curtis P.; Tosser-Klopp, Gwenola
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Real-time SARS-CoV-2 diagnostic and variants tracking over multiple candidates using nanopore DNA sequencing
err2021-08-05
err11
errOAAI
errStuder, Francois; Petit, Jean-Louis; Engelen, Stefan; Mendoza-Parra, Marco Antonio
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A framework for in situ molecular characterization of coral holobionts using nanopore sequencing (vol 10, 15893, 2020)
err2021-01-18
err1
errOAAI
errCarradec, Quentin; Poulain, Julie; Boissin, Emilie; Hume, Benjamin C. C.; Voolstra, Christian R.; Ziegler, Maren; Engelen, Stefan; Cruaud, Corinne; Planes, Serge; Wincker, Patrick
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Long-read assembly of the Brassica napus reference genome Darmor-bzh
err2020-12-15
err80
errOAAI
errRousseau-Gueutin, Mathieu; Belser, Caroline; Da Silva, Corinne; Richard, Gautier; Istace, Benjamin; Cruaud, Corinne; Falentin, Cyril; Boideau, Franz; Boutte, Julien; Delourme, Regine; Deniot, Gwenaelle; Engelen, Stefan; de Carvalho, Julie Ferreira; Lemainque, Arnaud; Maillet, Loeiz; Morice, Jerome; Wincker, Patrick; Denoeud, France; Chevre, Anne-Marie; Aury, Jean-Marc
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A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
err2020-09-28
err17
errOAAI
errCarradec, Quentin; Poulain, Julie; Boissin, Emilie; Hume, Benjamin C. C.; Voolstra, Christian R.; Ziegler, Maren; Engelen, Stefan; Cruaud, Corinne; Planes, Serge; Wincker, Patrick
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FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencingFORK-seq: 通过纳米孔测序复制酿酒酵母基因组的景观
err2020-05-26
err29
errOAAI
errHennion, Magali; Arbona, Jean-Michel; Lacroix, Laurent; Cruaud, Corinne; Theulot, Bertrand; Le Tallec, Benoit; Proux, Florence; Wu, Xia; Novikova, Elizaveta; Engelen, Stefan; Lemainque, Arnaud; Audit, Benjamin; Hyrien, Olivier
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An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity
err2019-09-09
err40
errOAAI
errBenjelloun, Badr; Boyer, Frederic; Streeter, Ian; Zamani, Wahid; Engelen, Stefan; Alberti, Adriana; Alberto, Florian J.; BenBati, Mohamed; Ibnelbachyr, Mustapha; Chentouf, Mouad; Bechchari, Abdelmajid; Rezaei, Hamid R.; Naderi, Saeid; Stella, Alessandra; Chikhi, Abdelkader; Clarke, Laura; Kijas, James; Flicek, Paul; Taberlet, Pierre; Pompanon, Francois
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Transposition favors the generation of large effect mutations that may facilitate rapid adaption
err2019-07-31
err104
errOAAI
errQuadrana, Leandro; Etcheverry, Mathilde; Gilly, Arthur; Caillieux, Erwann; Madoui, Mohammed-Amin; Guy, Julie; Silveira, Amanda Bortolini; Engelen, Stefan; Baillet, Victoire; Wincker, Patrick; Aury, Jean-Marc; Colot, Vincent
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Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps使用纳米孔长读段和光学图的植物基因组的染色体规模组装
err2018-11-02
err281
PREAI
errBelser, Caroline; Istace, Benjamin; Denis, Erwan; Dubarry, Marion; Baurens, Franc-Christophe; Falentin, Cyril; Genete, Mathieu; Berrabah, Wahiba; Chevre, Anne-Marie; Delourme, Regine; Deniot, Gwenaelle; Denoeud, France; Duffe, Philippe; Engelen, Stefan; Lemainque, Arnaud; Manzanares-Dauleux, Maria; Martin, Guillaume; Morice, Jerome; Noel, Benjamin; Vekemans, Xavier; D'Hont, Angelique; Rousseau-Gueutin, Mathieu; Barbe, Valerie; Cruaud, Corinne; Wincker, Patrick; Aury, Jean-Marc
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The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes
err2018-07-01
err71
errOAAI
errCubry, Philippe; Tranchant-Dubreuil, Christine; Thuillet, Anne-Celine; Monat, Cecile; Ndjiondjop, Marie-Noelle; Labadie, Karine; Cruaud, Corinne; Engelen, Stefan; Scarcelli, Nora; Rhone, Benedicte; Burgarella, Concetta; Dupuy, Christian; Larmande, Pierre; Wincker, Patrick; Francois, Olivier; Sabot, Francois; Vigouroux, Yves
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Convergent genomic signatures of domestication in sheep and goats绵羊和山羊驯化的趋同基因组特征
err2018-03-06
err209
errOAAI
errAlberto, Florian J.; Boyer, Frederic; Orozco-terWengel, Pablo; Streeter, Ian; Servin, Bertrand; de Villemereuil, Pierre; Benjelloun, Badr; Librado, Pablo; Biscarini, Filippo; Colli, Licia; Barbato, Mario; Zamani, Wahid; Alberti, Adriana; Engelen, Stefan; Stella, Alessandra; Joost, Stephane; Ajmone-Marsan, Paolo; Negrini, Riccardo; Orlando, Ludovic; Rezaei, Hamid Reza; Naderi, Saeid; Clarke, Laura; Flicek, Paul; Wincker, Patrick; Coissac, Eric; Kijas, James; Tosser-Klopp, Gwenola; Chikhi, Abdelkader; Bruford, Michael W.; Taberlet, Pierre; Pompanon, Francois
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A global ocean atlas of eukaryotic genes真核生物基因的全球海洋图谱
err2018-01-25
err224
errOAAI
errCarradec, Quentin; Pelletier, Eric; Da Silva, Corinne; Alberti, Adriana; Seeleuthner, Yoann; Blanc-Mathieu, Romain; Lima-Mendez, Gipsi; Rocha, Fabio; Tirichine, Leila; Labadie, Karine; Kirilovsky, Amos; Bertrand, Alexis; Engelen, Stefan; Madoui, Mohammed-Amin; Meheust, Raphael; Poulain, Julie; Romac, Sarah; Richter, Daniel J.; Yoshikawa, Genki; Dimier, Celine; Kandels-Lewis, Stefanie; Picheral, Marc; Searson, Sarah; Jaillon, Olivier; Aury, Jean-Marc; Karsenti, Eric; Sullivan, Matthew B.; Sunagawa, Shinichi; Bork, Peer; Not, Fabrice; Hingamp, Pascal; Raes, Jeroen; Guidi, Lionel; Ogata, Hiroyuki; de Vargas, Colomban; Iudicone, Daniele; Bowler, Chris; Wincker, Patrick
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de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer使用牛津纳米孔MinION测序仪对天然酵母分离物进行从头组装和种群基因组调查
err2017-01-07
err110
errOAAI
errIstace, Benjamin; Friedrich, Anne; d'Agata, Leo; Faye, Sebastien; Payen, Emilie; Beluche, Odette; Caradec, Claudia; Davidas, Sabrina; Cruaud, Corinne; Liti, Gianni; Lemainque, Arnaud; Engelen, Stefan; Wincker, Patrick; Schacherer, Joseph; Aury, Jean-Marc
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Genome assembly using Nanopore-guided long and error-free DNA reads使用纳米孔引导的长且无错误的DNA读取进行基因组组装
err2015-04-20
err146
errOAAI
errMadoui, Mohammed-Amin; Engelen, Stefan; Cruaud, Corinne; Belser, Caroline; Bertrand, Laurie; Alberti, Adriana; Lemainque, Arnaud; Wincker, Patrick; Aury, Jean-Marc
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Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data
err2014-01-01
err52
errOAAI
errAlberti, Adriana; Belser, Caroline; Engelen, Stefan; Bertrand, Laurie; Orvain, Celine; Brinas, Laura; Cruaud, Corinne; Giraut, Laurene; Da Silva, Corinne; Firmo, Cyril; Aury, Jean-Marc; Wincker, Patrick
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