Samuel S. Shepard - Publications, H-index & Citations

Samuel S. Shepard

influenza division, national center for immunizations and respiratory disease, centers for disease control and prevention , 1600 clifton road, atlanta, ga 30333 ,

18H指数

40论文数

1.4K被引数

收录论文 19

发表时间

Development of avian influenza A(H5) virus datasets for Nextclade enables rapid and accurate clade assignment 开发禽流感A(H5)病毒数据集用于Nextclade，实现了快速且准确的谱系分配

Virus Evolution

IF4

2025-08-04

OAAI

Jordan T Ort; Samuel S Shepard; Sonja A Zolnoski; Tommy T-Y Lam; C Todd Davis; Richard A Neher; Louise H Moncla

Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections

PLOS PATHOGENS

IF4.9

2024-04-16

OAAI

Vaninsberghe, David; Mcbride, Dillon S.; Dasilva, Juliana; Stark, Thomas J.; Lau, Max S. Y.; Shepard, Samuel S.; Barnes, John R.; Bowman, Andrew S.; Lowen, Anice C.; Koelle, Katia

SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States

EMERGING INFECTIOUS DISEASES

IF6.6

2022-07-01

OAAI

Lacek, Kristine A.; Rambo-Martin, Benjamin L.; Batra, Dhwani; Zheng, Xiao-Yu; Hassell, Norman; Sakaguchi, Hitoshi; Peacock, Thomas; Groves, Natalie; Keller, Matthew; Wilson, Malania M.; Sheth, Mili; Davis, Morgan L.; Borroughs, Mark; Gerhart, Jonathan; Shepard, Samuel S.; Cook, Peter W.; Lee, Justin; Wentworth, David E.; Barnes, John R.; Kondor, Rebecca; Paden, Clinton R.

Novel and extendable genotyping system for human respiratory syncytial virus based on whole-genome sequence analysis

INFLUENZA AND OTHER RESPIRATORY VIRUSES

IF4.2

2021-12-10

OAAI

Chen, Jiani; Qiu, Xueting; Avadhanula, Vasanthi; Shepard, Samuel S.; Kim, Do-Kyun; Hixson, James; Piedra, Pedro A.; Bahl, Justin

Avian Influenza A Viruses Reassort and Diversify Differently in Mallards and Mammals

VIRUSES-BASEL

IF3.5

2021-03-19

OAAI

Ganti, Ketaki; Bagga, Anish; DaSilva, Juliana; Shepard, Samuel S.; Barnes, John R.; Shriner, Susan; Koelle, Katia; Lowen, Anice C.

Impact of Immune Priming, Vaccination, and Infection on Influenza A(H3N2) Antibody Landscapes in Children 免疫启动，疫苗接种和感染对儿童甲型流感 (H3N2) 抗体景观的影响

JOURNAL OF INFECTIOUS DISEASES

IF4.5

2020-10-22

OAAI

Hinojosa, Michael; Shepard, Samuel S.; Chung, Jessie R.; King, Jennifer P.; McLean, Huong Q.; Flannery, Brendan; Belongia, Edward A.; Levine, Min Z.

Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome (vol 8, 14408, 2018)

SCIENTIFIC REPORTS

IF3.9

2018-10-19

OAAI

Keller, Matthew W.; Rambo-Martin, Benjamin L.; Wilson, Malania M.; Ridenour, Callie A.; Shepard, Samuel S.; Stark, Thomas J.; Neuhaus, Elizabeth B.; Dugan, Vivien G.; Wentworth, David E.; Barnes, John R.

Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome

SCIENTIFIC REPORTS

IF3.9

2018-09-26

OAAI

Antigenic characterization of highly pathogenic avian influenza A(H5N1) viruses with chicken and ferret antisera reveals clade-dependent variation in hemagglutination inhibition profiles

EMERGING MICROBES & INFECTIONS

IF7.5

2018-05-31

OAAI

Diep Thi Nguyen; Shepard, Samuel S.; Burke, David Francis; Jones, Joyce; Thor, Sharmi; Long Van Nguyen; Tho Dang Nguyen; Balish, Amanda; Dang Nguyen Hoang; Thanh Long To; Iqbal, Munir; Wentworth, David E.; Spackman, Erica; van Doorn, H. Rogier; Davis, C. Todd; Bryant, Juliet E.

Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors EVD幸存者的主动埃博拉病毒复制和异质进化率

CELL REPORTS

IF6.9

2018-01-01

OAAI

Whitmer, Shannon L. M.; Ladner, Jason T.; Wiley, Michael R.; Patel, Ketan; Dudas, Gytis; Rambaut, Andrew; Sahr, Foday; Prieto, Karla; Shepard, Samuel S.; Carmody, Ellie; Knust, Barbara; Naidoo, Dhamari; Deen, Gibrilla; Formenty, Pierre; Nichol, Stuart T.; Palacios, Gustavo; Stroeher, Ute

Shifting Clade Distribution, Reassortment, and Emergence of New Subtypes of Highly Pathogenic Avian Influenza A(H5) Viruses Collected from Vietnamese Poultry from 2012 to 2015

JOURNAL OF VIROLOGY

IF3.8

2017-03-01

OAAI

Nguyen, Diep T.; Jang, Yunho; Nguyen, Tho D.; Jones, Joyce; Shepard, Samuel S.; Yang, Hua; Gerloff, Nancy; Fabrizio, Thomas; Nguyen, Long V.; Inui, Ken; Yang, Genyan; Creanga, Adrian; Wang, Li; Mai, Duong T.; Thor, Sharmi; Stevens, James; To, Thanh L.; Wentworth, David E.; Tung Nguyen; Pham, Dong V.; Bryant, Juliet E.; Davis, C. Todd

Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler (vol 17, 708, 2016)

BMC GENOMICS

IF3.7

2016-10-13

OAAI

Shepard, Samuel S.; Meno, Sarah; Bahl, Justin; Wilson, Malania M.; Barnes, John; Neuhaus, Elizabeth

Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler

BMC GENOMICS

IF3.7

2016-09-05

135

OAAI

Shepard, Samuel S.; Meno, Sarah; Bahl, Justin; Wilson, Malania M.; Barnes, John; Neuhaus, Elizabeth

Preliminary Evaluation of the Effect of Investigational Ebola Virus Disease Treatments on Viral Genome Sequences 研究性埃博拉病毒疾病治疗对病毒基因组序列影响的初步评价

JOURNAL OF INFECTIOUS DISEASES

IF4.5

2016-08-11

OAAI

Whitmer, Shannon L. M.; Albarino, Cesar; Shepard, Samuel S.; Dudas, Gytis; Sheth, Mili; Brown, Shelley C.; Cannon, Deborah; Erickson, Bobbie R.; Gibbons, Aridth; Schuh, Amy; Sealy, Tara; Ervin, Elizabeth; Frace, Mike; Uyeki, Timothy M.; Nichol, Stuart T.; Stroher, Ute

Improving pandemic influenza risk assessment

ELIFE

IF0

2014-10-16

OAAI

Russell, Colin A.; Kasson, Peter M.; Donis, Ruben O.; Riley, Steven; Dunbar, John; Rambaut, Andrew; Asher, Jason; Burke, Stephen; Davis, C. Todd; Garten, Rebecca J.; Gnanakaran, Sandrasegaram; Hay, Simon I.; Herfst, Sander; Lewis, Nicola S.; Lloyd-Smith, James O.; Macken, Catherine A.; Maurer-Stroh, Sebastian; Neuhaus, Elizabeth; Parrish, Colin R.; Pepin, Kim M.; Shepard, Samuel S.; Smith, David L.; Suarez, David L.; Trock, Susan C.; Widdowson, Marc-Alain; George, Dylan B.; Lipsitch, Marc; Bloom, Jesse D.

Exploiting mid-range DNA patterns for sequence classification: binary abstraction Markov models

NUCLEIC ACIDS RESEARCH

IF13.1

2012-02-16

OAAI

Shepard, Samuel S.; McSweeny, Andrew; Serpen, Gursel; Fedorov, Alexei

Critical association of ncRNA with introns

NUCLEIC ACIDS RESEARCH

IF13.1

2010-11-10

161

OAAI

Rearick, David; Prakash, Ashwin; McSweeny, Andrew; Shepard, Samuel S.; Fedorova, Larisa; Fedorov, Alexei

Evolution of genomic sequence inhomogeneity at mid-range scales

BMC GENOMICS

IF3.7

2009-11-05

OAAI

Prakash, Ashwin; Shepard, Samuel S.; He, Jie; Hart, Benjamin; Chen, Miao; Amarachintha, Surya P.; Mileyeva-Biebesheimer, Olga; Bechtel, Jason; Fedorov, Alexei

Genomic mid-range inhomogeneity correlates with an abundance of RNA secondary structures

BMC GENOMICS

IF3.7

2008-06-12

OAAI

Bechtel, Jason M.; Wittenschlaeger, Thomas; Dwyer, Trisha; Song, Jun; Arunachalam, Sasi; Ramakrishnan, Sadeesh K.; Shepard, Samuel; Fedorov, Alexei

研究方向