未登录 Genome sequences of Listeria ivanovii from clinical infections and food products, 1987-2025 李斯特菌李斯特菌伊万诺夫ii的临床感染和食品产品基因组序列，1987-2025 Ende, Zachary; Walters, Cynney; Stroika, Steven; Smith, Trey; Kim, Justin; Lawsin, Adrian; Batra, Dhwani; Rowe, Lori; Katz, Lee S.; Lee, Christine C.; Kucerova, Zuzana 分享 收藏
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training Griffiths, Emma J.; Mendes, Ines; Maguire, Finlay; Guthrie, Jennifer L.; Wee, Bryan A.; Schmedes, Sarah; Holt, Kathryn; Yadav, Chanchal; Cameron, Rhiannon; Barclay, Charlotte; Dooley, Damion; Maccannell, Duncan; Chindelevitch, Leonid; Mizrachi, Ilene Karsch-; Waheed, Zahra; Katz, Lee; Petit, Robert, III; Dave, Mugdha; Oluniyi, Paul; Nasar, Muhammad Ibtisam; Raphenya, Amogelang; Hsiao, William W. L.; Timme, Ruth E. 分享 收藏
Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics 使用平均核苷酸同一性度量从全基因组序列快速鉴定肠道细菌 Lindsey, Rebecca L.; Gladney, Lori M.; Huang, Andrew D.; Griswold, Taylor; Katz, Lee S.; Dinsmore, Blake A.; Im, Monica S.; Kucerova, Zuzana; Smith, Peyton A.; Lane, Charlotte; Carleton, Heather A. 分享 收藏
Reoccurring Escherichia coli O157:H7 Strain Linked to Leafy Greens-Associated Outbreaks, 2016-2019 Chen, Jessica C.; Patel, Kane; Smith, Peyton A.; Vidyaprakash, Eshaw; Snyder, Caroline; Tagg, Kaitlin A.; Webb, Hattie E.; Schroeder, Morgan N.; Katz, Lee S.; Rowe, Lori A.; Howard, Dakota; Griswold, Taylor; Lindsey, Rebecca L.; Carleton, Heather A. 分享 收藏
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Genome Sequences from a Reemergence of Vibrio cholerae in Haiti, 2022 Reveal Relatedness to Previously Circulating Strains 来自海地霍乱弧菌重新出现的基因组序列，2022揭示了与先前传播的菌株的相关性 Walters, Cynney; Chen, Jessica; Stroika, Steven; Katz, Lee S.; Turnsek, Maryann; Compere, Valusnor; Im, Monica S.; Gomez, Suzanna; McCullough, Andre; Landaverde, Clarissa; Putney, Jordan; Caidi, Hayat; Folster, Jason; Carleton, Heather A.; Boncy, Jacques; Lee, Christine C. 分享 收藏
Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya 肯尼亚城市非正式定居点中循环伤寒沙门氏菌菌株的分子特征 Ochieng, Caroline; Chen, Jessica C.; Osita, Mike Powel; Katz, Lee S.; Griswold, Taylor; Omballa, Victor; Ng'eno, Eric.; Ouma, Alice; Wamola, Newton; Opiyo, Christine; Achieng, Loicer; Munywoki, Patrick K.; Hendriksen, Rene S.; Freeman, Molly; Mikoleit, Matthew; Juma, Bonventure; Bigogo, Godfrey; Mintz, Eric; Verani, Jennifer R.; Hunsperger, Elizabeth; Carleton, Heather A. 分享 收藏
Software testing in microbial bioinformatics: a call to action 微生物生物信息学中的软件测试: 行动呼吁 van der Putten, Boas C. L.; Mendes, C., I; Talbot, Brooke M.; De Korne-Elenbaas, Jolinda; Mamede, Rafael; Vila-Cerqueira, Pedro; Coelho, Luis Pedro; Gulvik, Christopher A.; Katz, Lee S. 分享 收藏
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package 面向未来并最大化元数据的效用: PHA4GE SARS-CoV-2上下文数据规范包 Griffiths, Emma J.; Timme, Ruth E.; Mendes, Catarina Ines; Page, Andrew J.; Alikhan, Nabil-Fareed; Fornika, Dan; Maguire, Finlay; Campos, Josefina; Park, Daniel; Olawoye, Idowu B.; Oluniyi, Paul E.; Anderson, Dominique; Christoffels, Alan; da Silva, Anders Goncalves; Cameron, Rhiannon; Dooley, Damion; Katz, Lee S.; Black, Allison; Karsch-Mizrachi, Ilene; Barrett, Tanya; Johnston, Anjanette; Connor, Thomas R.; Nicholls, Samuel M.; Witney, Adam A.; Tyson, Gregory H.; Tausch, Simon H.; Raphenya, Amogelang R.; Alcock, Brian; Aanensen, David M.; Hodcroft, Emma; Hsiao, William W. L.; Vasconcelos, Ana Tereza R.; MacCannell, Duncan R. 分享 收藏
Clinical and Laboratory Findings in Patients With Potential Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Reinfection, May-July 2020 2020年5月到7月潜在新型冠状病毒 (SARS-CoV-2) 再感染患者的临床和实验室检查结果 Lee, James T.; Hesse, Elisabeth M.; Paulin, Heather N.; Datta, Deblina; Katz, Lee S.; Talwar, Amish; Chang, Gregory; Galang, Romeo R.; Harcourt, Jennifer L.; Tamin, Azaibi; Thornburg, Natalie J.; Wong, Karen K.; Stevens, Valerie; Kim, Kaylee; Tong, Suxiang; Zhou, Bin; Queen, Krista; Drobeniuc, Jan; Folster, Jennifer M.; Sexton, D. Joseph; Ramachandran, Sumathi; Browne, Hannah; Iskander, John; Mitruka, Kiren 分享 收藏
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Whole Genome and Core Genome Multilocus Sequence Typing and Single Nucleotide Polymorphism Analyses of Listeria monocytogenes Isolates Associated with an Outbreak Linked to Cheese, United States, 2013 单核细胞增生李斯特菌分离株的全基因组和核心基因组多位点序列分型和单核苷酸多态性分析，与美国奶酪相关的暴发有关，2013 Chen, Yi; Luo, Yan; Carleton, Heather; Timme, Ruth; Melka, David; Muruvanda, Tim; Wang, Charles; Kastanis, George; Katz, Lee S.; Turner, Lauren; Fritzinger, Angela; Moore, Terence; Stones, Robert; Blankenship, Joseph; Salter, Monique; Parish, Mickey; Hammack, Thomas S.; Evans, Peter S.; Tarr, Cheryl L.; Allard, Marc W.; Strain, Errol A.; Brown, Eric W. 分享 收藏
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SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology Petkau, Aaron; Mabon, Philip; Sieffert, Cameron; Knox, Natalie C.; Cabral, Jennifer; Iskander, Mariam; Iskander, Mark; Weedmark, Kelly; Zaheer, Rahat; Katz, Lee S.; Nadon, Celine; Reimer, Aleisha; Taboada, Eduardo; Beiko, Robert G.; Hsiao, William; Brinkman, Fiona; Graham, Morag; Van Domselaar, Gary 分享 收藏
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Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation Jackson, Brendan R.; Tarr, Cheryl; Strain, Errol; Jackson, Kelly A.; Conrad, Amanda; Carleton, Heather; Katz, Lee S.; Stroika, Steven; Gould, L. Hannah; Mody, Rajal K.; Silk, Benjamin J.; Beal, Jennifer; Chen, Yi; Timme, Ruth; Doyle, Matthew; Fields, Angela; Wise, Matthew; Tillman, Glenn; Defibaugh-Chavez, Stephanie; Kucerova, Zuzana; Sabol, Ashley; Roache, Katie; Trees, Eija; Simmons, Mustafa; Wasilenko, Jamie; Kubota, Kristy; Pouseele, Hannes; Klimke, William; Besser, John; Brown, Eric; Allard, Marc; Gerner-Smidt, Peter 分享 收藏
Two Listeria monocytogenes Pseudo-outbreaks Caused by Contaminated Laboratory Culture Media Matanock, Almea; Katz, Lee S.; Jackson, Kelly A.; Kucerova, Zuzana; Conrad, Amanda R.; Glover, William A.; Von Nguyen; Mohr, Marika C.; Marsden-Haug, Nicola; Thompson, Deborah; Dunn, John R.; Stroika, Steven; Melius, Beth; Tarr, Cheryl; Dietrich, Stephen E.; Kao, Annie S.; Kornstein, Laura; Li, Zhen; Maroufi, Azarnoush; Marder, Ellyn P.; Meyer, Rebecca; Perez-Osorio, Ailyn C.; Reddy, Vasudha; Reporter, Roshan; Carleton, Heather; Tweeten, Samantha; Waechter, HaeNa; Yee, Lisa M.; Wise, Matthew E.; Davis, Kim; Jackson, Brendan R. 分享 收藏
Determination of Evolutionary Relationships of Outbreak-Associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b by Whole-Genome Sequencing Bergholz, Teresa M.; den Bakker, Henk C.; Katz, Lee S.; Silk, Benjamin J.; Jackson, Kelly A.; Kucerova, Zuzana; Joseph, Lavin A.; Turnsek, Maryann; Gladney, Lori M.; Halpin, Jessica L.; Xavier, Karen; Gossack, Joseph; Ward, Todd J.; Frace, Michael; Tarrc, Cheryl L. 分享 收藏
Phylodynamic Analysis of Clinical and Environmental Vibrio cholerae Isolates from Haiti Reveals Diversification Driven by Positive Selection Azarian, Taj; Ali, Afsar; Johnson, Judith A.; Mohr, David; Prosperi, Mattia; Veras, Nazle M.; Jubair, Mohammed; Strickland, Samantha L.; Rashid, Mohammad H.; Alam, Meer T.; Weppelmann, Thomas A.; Katz, Lee S.; Tarr, Cheryl L.; Colwell, Rita R.; Morris, Glenn, Jr.; Salemi, Marco 分享 收藏
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