Matthew Cotten - Publications, H-index & Citations

Matthew Cotten

arizona state university

72H指数

273论文数

1.9W被引数

收录论文 92

发表时间

Longitudinal Epidemiology and Variant Dynamics of SARS-CoV-2 in Coastal Kenya (2020–2025): Clinical Features and Wave Patterns 肯尼亚沿海地区SARS-CoV-2的纵向流行病学和变异体动态（2020–2025）：临床特征和波动模式

Open Forum Infectious Diseases

IF3.8

2026-02-18

OAAI

Arnold W Lambisia; Joyce Nyiro; George Githinji; Esther N Katama; Edidah Moraa; John M Mwita; Martin Mutunga; Grace Maina; Philip Bejon; My V T Phan; Matthew Cotten; Simon Dellicour; L Isabella Ochola-Oyier; Charles Sande; Edward C Holmes; James Nyagwange; Charles N Agoti; null

Genomic and clinical epidemiology of SARS-CoV-2 in coastal Kenya: insights into variant circulation, reinfection, and multiple lineage importations during a post-pandemic wave 肯尼亚沿海地区SARS-CoV-2的基因组学与临床流行病学：后疫情浪潮期间毒株流行、再感染及多谱系输入的启示

BMC GLOBAL AND PUBLIC HEALTH

IF0

2025-09-09

OAAI

Lambisia, Arnold W.; Katama, Esther N.; Moraa, Edidah; Mwita, John M.; Gallagher, Katherine; Mutunga, Martin; Nyale, Emily; Omungala, Joan; Mwanga, Mike; Murunga, Nickson; Nyiro, Joyce; Nyagwange, James; Sande, Charles; Bejon, Philip; Githinji, George; Dellicour, Simon; Phan, My V. T.; Cotten, Matthew; Ochola-Oyier, L. Isabella; Holmes, Edward C.; Agoti, Charles N.

Viral epidemic preparedness: a perspective from five clinical laboratories in Europe

CLINICAL MICROBIOLOGY AND INFECTION

IF8.5

2024-05-01

OAAI

Martinez, Miguel Julian; Cotten, Matthew; Phan, My V. T.; Becker, Karsten; Espasa, Mateu; Leegaard, Truls M.; Lisby, Gorm; Schneider, Uffe Vest; Casals-Pascual, Climent

Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012-8 轮状病毒疫苗引入前后肯尼亚沿海地区轮状病毒G2P[4] 株的基因组流行病学，2012-8

VIRUS EVOLUTION

IF4

2023-04-15

OAAI

Makori, Timothy O.; Bargul, Joel L.; Lambisia, Arnold W.; Mwanga, Mike J.; Murunga, Nickson; de Laurent, Zaydah R.; Lewa, Clement S.; Mutunga, Martin; Kellam, Paul; Cotten, Matthew; Nokes, D. James; Phan, My; Agoti, Charles N.

Rapid, early, and potent Spike-directed IgG, IgM, and IgA distinguish asymptomatic from mildly symptomatic COVID-19 in Uganda, with IgG persisting for 28 months

FRONTIERS IN IMMUNOLOGY

IF5.9

2023-03-16

OAAI

Serwanga, Jennifer; Ankunda, Violet; Sembera, Jackson; Kato, Laban; Oluka, Gerald Kevin; Baine, Claire; Odoch, Geoffrey; Kayiwa, John; Auma, Betty Oliver; Jjuuko, Mark; Nsereko, Christopher; Cotten, Matthew; Onyachi, Nathan; Muwanga, Moses; Lutalo, Tom; Fox, Julie; Musenero, Monica; Kaleebu, Pontiano

Optimisation and Validation of a conventional ELISA and cut-offs for detecting and quantifying anti-SARS-CoV-2 Spike, RBD, and Nucleoprotein IgG, IgM, and IgA antibodies in Uganda

FRONTIERS IN IMMUNOLOGY

IF5.9

2023-03-14

OAAI

Oluka, Gerald Kevin; Namubiru, Patricia; Kato, Laban; Ankunda, Violet; Gombe, Ben; Cotten, Matthew; Musenero, Monica; Kaleebu, Pontiano; Fox, Julie; Serwanga, Jennifer

SARS-CoV-2 Omicron BA.5 Infections in Vaccinated Persons, Rural Uganda

EMERGING INFECTIOUS DISEASES

IF6.6

2023-01-01

OAAI

Mugisha, Joseph; Mpairwe, Bernard; Newton, Robert; Cotten, Matthew; Phan, My V. T.

Establishing farm dust as a useful viral metagenomic surveillance matrix

SCIENTIFIC REPORTS

IF3.9

2022-09-29

OAAI

Kwok, Kirsty T. T.; de Rooij, Myrna M. T.; Messink, Aniek B.; Wouters, Inge M.; Smit, Lidwien A. M.; Cotten, Matthew; Heederik, Dick J. J.; Koopmans, Marion P. G.; Phan, My V. T.

Spike Protein Cleavage-Activation in the Context of the SARS-CoV-2 P681R Mutation: an Analysis from Its First Appearance in Lineage A.23.1 Identified in Uganda

MICROBIOLOGY SPECTRUM

IF3.8

2022-08-31

OAAI

Lubinski, Bailey; Frazier, Laura E.; Phan, My V. T.; Bugembe, Daniel L.; Cunningham, Jessie L.; Tang, Tiffany; Daniel, Susan; Cotten, Matthew; Jaimes, Javier A.; Whittaker, Gary R.

Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study

ELIFE

IF0

2022-06-14

OAAI

Agoti, Charles N.; Ochola-Oyier, Lynette Isabella; Dellicour, Simon; Mohammed, Khadija Said; Lambisia, Arnold W.; de Laurent, Zaydah R.; Morobe, John M.; Mburu, Maureen W.; Omuoyo, Donwilliams O.; Ongera, Edidah M.; Ndwiga, Leonard; Maitha, Eric; Kitole, Benson; Suleiman, Thani; Mwakinangu, Mohamed; Nyambu, John K.; Otieno, John; Salim, Barke; Musyoki, Jennifer; Murunga, Nickson; Otieno, Edward; Kiiru, John N.; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Kinyanjui, Samson; Warimwe, George; Phan, My; Agweyu, Ambrose; Cotten, Matthew; Barasa, Edwine; Tsofa, Benjamin; Nokes, D. James; Bejon, Philip; Githinji, George

Travel measures in the SARS-CoV-2 variant era need clear objectives

LANCET

IF88.5

2022-04-01

OAAI

Kucharski, Adam J.; Jit, Mark; Logan, James G.; Cotten, Matthew; Clifford, Samuel; Quilty, Billy J.; Russell, Timothy W.; Peeling, Rosanna W.; Antonio, Martin; Heymann, David L.

Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya 通过对来自肯尼亚的临床呼吸道样本进行宏基因组测序来鉴定遗漏的病毒

SCIENTIFIC REPORTS

IF3.9

2022-01-07

OAAI

Phan, My V. T.; Agoti, Charles N.; Munywoki, Patrick K.; Otieno, Grieven P.; Ngama, Mwanajuma; Kellam, Paul; Cotten, Matthew; Nokes, D. James

SARS-CoV-2 Variants, South Sudan, January-March 2021

EMERGING INFECTIOUS DISEASES

IF6.6

2021-12-01

OAAI

Bugembe, Daniel Lule; Phan, My V. T.; Abias, Abe G.; Ayei, James; Deng, Lul Lojok; Lako, Richard Lino Loro; Rumunu, John; Kaleebu, Pontiano; Wamala, Joseph Francis; Hm, Juma John; Lodiongo, Dennis Kenyi; Bunga, Sudhir; Cotten, Matthew

Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses

VIRUS EVOLUTION

IF4

2021-07-23

OAAI

Cotten, Matthew; Robertson, David L.; Phan, My V. T.

No Evidence Known Viruses Play a Role in the Pathogenesis of Onchocerciasis-Associated Epilepsy. An Explorative Metagenomic Case-Control Study 没有证据表明已知病毒在盘尾丝虫病相关癫痫的发病机理中起作用。一项探索性的宏基因组病例对照研究

PATHOGENS

IF3.3

2021-06-22

OAAI

Roach, Michael; Cantu, Adrian; Vieri, Melissa Krizia; Cotten, Matthew; Kellam, Paul; Phan, My; van der Hoek, Lia; Mandro, Michel; Tepage, Floribert; Mambandu, Germain; Musinya, Gisele; Laudisoit, Anne; Colebunders, Robert; Edwards, Robert; Mokili, John L.

Alternate primers for whole-genome SARS-CoV-2 sequencing

VIRUS EVOLUTION

IF4

2021-02-04

OAAI

Cotten, Matthew; Bugembe, Dan Lule; Kaleebu, Pontiano; Phan, My V. T.

HIV-1 Gag-Pol Sequences from Ugandan Early Infections Reveal Sequence Variants Associated with Elevated Replication Capacity

VIRUSES-BASEL

IF3.5

2021-01-23

OAAI

Kapaata, Anne; Balinda, Sheila N.; Xu, Rui; Salazar, Maria G.; Herard, Kimberly; Brooks, Kelsie; Laban, Kato; Hare, Jonathan; Dilernia, Dario; Kamali, Anatoli; Ruzagira, Eugene; Mukasa, Freddie; Gilmour, Jill; Salazar-Gonzalez, Jesus F.; Yue, Ling; Cotten, Matthew; Hunter, Eric; Kaleebu, Pontiano

Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda

EMERGING INFECTIOUS DISEASES

IF6.6

2020-10-01

OAAI

Bugembe, Daniel Lule; Kayiwa, John; Phan, My V. T.; Tushabe, Phiona; Balinandi, Stephen; Dhaala, Beatrice; Lexow, Jonas; Mwebesa, Henry; Aceng, Jane; Kyobe, Henry; Ssemwanga, Deogratius; Lutwama, Julius; Kaleebu, Pontiano; Cotten, Matthew

Entamoeba and Giardia parasites implicated as hosts of CRESS viruses

NATURE COMMUNICATIONS

IF15.7

2020-09-15

OAAI

Kinsella, Cormac M.; Bart, Aldert; Deijs, Martin; Broekhuizen, Patricia; Kaczorowska, Joanna; Jebbink, Maarten F.; van Gool, Tom; Cotten, Matthew; Van der Hoek, Lia

Nosocomial outbreak of the Middle East Respiratory Syndrome coronavirus: A phylogenetic, epidemiological, clinical and infection control analysis

TRAVEL MEDICINE AND INFECTIOUS DISEASE

IF4.7

2020-09-01

OAAI

Barry, Mazin; Phan, My V. T.; Akkielah, Layan; Al-Majed, Fahad; Alhetheel, Abdulkarim; Somily, Ali; Alsubaie, Sarah Suliman; McNabb, Scott J. N.; Cotten, Matthew; Zumla, Alimuddin; Memish, Ziad A.

研究方向