Andrew J. Spakowitz - Publications, H-index & Citations

Andrew J. Spakowitz

stanford university

37H指数

171论文数

5.6K被引数

收录论文 82

发表时间

Leveraging inhomogeneous binding of incompatible constituents for adaptive copolymer self-assembly 利用不兼容组分的非均匀结合实现适应性共聚物自组装

Soft Matter

IF2.8

2025-11-18

PREAI

Thomas M. Habte; Andrew J. Spakowitz

Parameterizing Conjugated Polymers as Ribbon-like Chains

MACROMOLECULES

IF5.2

2025-10-01

PREAI

Sagireddy, Srikant; Michaels, Wesley; Lipschultz, Andrew; Spakowitz, Andrew J.; Qin, Jian

Kinetic organization of the genome revealed by ultraresolution multiscale live imaging 基因组动力学的超分辨率多尺度活体成像揭示

Science

IF45.8

2025-09-18

OAAI

Joo Lee; Liang-Fu Chen; Simon Gaudin; Kavvya Gupta; Ana Novacic; Andrew Spakowitz; Alistair Nicol Boettiger

Nucleosome placement and polymer mechanics explain genomic contacts on 100 kb scales 核小体定位和聚合物力学解释了基因组接触在100 kb尺度上的情况

NUCLEIC ACIDS RESEARCH

IF13.1

2025-08-12

OAAI

Corrette, John; Li, Jiachun; Shao, Hanjuan; Veerasubramanian, Praveen Krishna; Spakowitz, Andrew; Downing, Timothy L.; Allard, Jun

Modeling DNA methyltransferase function to predict epigenetic correlation patterns in healthy and cancer cells 模拟DNA甲基转移酶功能以预测健康细胞和癌细胞中的表观遗传相关性模式

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2025-01-10

PREAI

Tse, Ariana Y.; Spakowitz, Andrew J.

Cell tumbling enhances stem cell differentiation in hydrogels via nuclear mechanotransduction

NATURE MATERIALS

IF38.5

2024-11-01

PREAI

Ayushman, Manish; Mikos, Georgios; Tong, Xinming; Sinha, Sauradeep; Lopez-Fuentes, Eunice; Jones, Sarah; Cai, Pamela C.; Lee, Hung-Pang; Morrison, Ashby J.; Spakowitz, Andrew; Heilshorn, Sarah C.; Sweet-Cordero, Alejandro; Yang, Fan

The lysogenic filamentous Pseudomonas bacteriophage phage Pf slows mucociliary transport

PNAS NEXUS

IF3.8

2024-09-09

OAAI

Burgener, Elizabeth B.; Cai, Pamela C.; Kratochvil, Michael J.; Rojas-Hernandez, Laura S.; Joo, Nam Soo; Gupta, Aditi; Secor, Patrick R.; Heilshorn, Sarah C.; Spakowitz, Andrew J.; Wine, Jeffrey J.; Bollyky, Paul L.; Milla, Carlos E.

Physical modeling of nucleosome clustering in euchromatin resulting from interactions between epigenetic reader proteins

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2024-06-20

OAAI

Wakim, Joseph G.; Spakowitz, Andrew J.

Air-liquid intestinal cell culture allows in situ rheological characterization of intestinal mucus

APL BIOENGINEERING

IF4.1

2024-05-07

OAAI

Cai, Pamela C.; Braunreuther, Margaret; Shih, Audrey; Spakowitz, Andrew J.; Fuller, Gerald G.; Heilshorn, Sarah C.

Exploration of Phase Behavior in Asymmetric Semiflexible Polyelectrolyte Mixtures Using Polymer Field Theory

MACROMOLECULES

IF5.2

2024-02-27

PREAI

Beckinghausen, Michael; Spakowitz, Andrew J.

Conformational Statistics of Ribbon-like Chains

MACROMOLECULES

IF5.2

2023-10-13

PREAI

Michaels, Wesley; Spakowitz, Andrew J.; Qin, Jian

Leveraging polymer modeling to reconstruct chromatin connectivity from live images

BIOPHYSICAL JOURNAL

IF3.1

2023-09-01

PREAI

Dutta, Sayantan; Ghosh, Ashesh; Boettiger, Alistair N.; Spakowitz, Andrew J.

Interplay of Polymer Structure, Solvent Ordering, and Charge Fluctuations in Polyelectrolyte Solution Thermodynamics

MACROMOLECULES

IF5.2

2022-12-27

PREAI

Beckinghausen, Michael; Spakowitz, Andrew J.

Closing the loop between microstructure and charge transport in conjugated polymers by combining microscopy and simulation

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2022-11-07

OAAI

Balhorn, Luke; MacPherson, Quinn; Bustillo, Karen C.; Takacs, Christopher J.; Spakowitz, Andrew J.; Salleo, Alberto

Semiflexible polymer solutions. II. Fluctuations and Frank elastic constants

JOURNAL OF CHEMICAL PHYSICS

IF3.1

2022-10-21

OAAI

Ghosh, Ashesh; MacPherson, Quinn; Wang, Zhen-Gang; Spakowitz, Andrew J.

Rheological Characterization and Theoretical Modeling Establish Molecular Design Rules for Tailored Dynamically Associating Polymers

ACS CENTRAL SCIENCE

IF10.4

2022-09-12

OAAI

Cai, Pamela C.; Su, Bo; Zou, Lei; Webber, Matthew J.; Heilshorn, Sarah C.; Spakowitz, Andrew J.

Biochemical, biophysical, and immunological characterization of respiratory secretions in severe SARS-CoV-2 infections

JCI INSIGHT

IF6.1

2022-06-22

OAAI

Kratochvil, Michael J.; Kaber, Gernot; Demirdjian, Sally; Cai, Pamela C.; Burgener, Elizabeth B.; Nagy, Nadine; Barlow, Graham L.; Popescu, Medeea; Nicolls, Mark R.; Ozawa, Michael G.; Regula, Donald P.; Pacheco-Navarro, Ana E.; Yang, Samuel; Perez, Vinicio A. de Jesus; Karmouty-Quintana, Harry; Peters, Andrew M.; Zhao, Bihong; Buja, Maximilian L.; Johnson, Pamela Y.; Vernon, Robert B.; Wight, Thomas N.; Milla, Carlos E.; Rogers, Angela J.; Spakowitz, Andrew J.; Heilshorn, Sarah C.; Bollyky, Paul L.

Coarse-grained modeling reveals the impact of supercoiling and loop length in DNA looping kinetics

BIOPHYSICAL JOURNAL

IF3.1

2022-05-01

OAAI

Starr, Charles H.; Bryant, Zev; Spakowitz, Andrew J.

Diffusion and distal linkages govern interchromosomal dynamics during meiotic prophase

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2022-03-18

OAAI

Newman, Trent A. C.; Beltran, Bruno; McGehee, James M.; Elnatan, Daniel; Cahoon, Cori K.; Paddy, Michael R.; Chu, Daniel B.; Spakowitz, Andrew J.; Burgess, Sean M.

Impact of chromosomal organization on epigenetic drift and domain stability revealed by physics-based simulations

BIOPHYSICAL JOURNAL

IF3.1

2021-11-01

OAAI

Wakim, Joseph G.; Sandholtz, Sarah H.; Spakowitz, Andrew J.

研究方向