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K

Kei-ichi Okazaki

national institutes of natural sciences

18H指数
100论文数
1.8K被引数
收录论文 33
发表时间
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Conformational Dynamics of Na+-Pumping NADH-Quinone Oxidoreductase during Na+ Translocation from AlphaFold-Facilitated Markov State ModelingNa+-转运烟酰胺腺嘌呤二核苷酸-醌氧化还原酶在Na+转位过程中的构象动力学：基于AlphaFold促进的马尔可夫状态建模
errJournal of Chemical Information and Modeling
IF5.3
err2026-04-03
err0
errOAAI
errTakehito Seki; Jun Ohnuki; Kei-ichi Okazaki
err分享
err收藏
The redox driven Na+-pumping mechanism in Vibrio cholerae NADH-quinone oxidoreductase relies on dynamic conformational changes霍乱弧菌中由氧化还原驱动的NADH-quinone oxidoreductase的Na⁺泵机制依赖于动态的构象变化。
errNature Communications
IF15.7
err2026-02-12
err0
errOAAI
errMoe Ishikawa-Fukuda; Takehito Seki; Jun-ichi Kishikawa; Takahiro Masuya; Kei-ichi Okazaki; Takayuki Kato; Blanca Barquera; Hideto Miyoshi; Masatoshi Murai
err分享
err收藏
Membrane Constriction by Dynamin through GTP-Driven Conformational Changes from Coarse-Grained Molecular Dynamics Simulations通过粗粒化分子动力学模拟研究dynamin介导的GTP驱动构象变化引起的膜收缩
errJOURNAL OF PHYSICAL CHEMISTRY LETTERS
IF4.6
err2025-11-01
err0
PREAI
errMahmood, Md. Iqbal; Kubo, Shintaroh; Noguchi, Hiroshi; Okazaki, Kei-ichi
err分享
err收藏
Rotation-Direction-Dependent Mechanism of the Inhibitor Protein IF1 for Mitochondrial ATP Synthase from Atomistic SimulationsIF1抑制蛋白对线粒体ATP合酶的旋转方向依赖性机制：基于原子模拟的研究
errJACS AU
IF8.7
err2025-05-27
err0
errOAAI
errRyohei Kobayashi; Kei-ichi Okazaki
err分享
err收藏
Unveiling interatomic distances influencing the reaction coordinates in alanine dipeptide isomerization: An explainable deep learning approach
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2024-05-02
err1
errOAAI
errOkada, Kazushi; Kikutsuji, Takuma; Okazaki, Kei-ichi; Mori, Toshifumi; Kim, Kang; Matubayasi, Nobuyuki
err分享
err收藏
Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota (vol 14, 1730, 2023)
errNATURE COMMUNICATIONS
IF15.7
err2023-09-28
err0
errOAAI
errJaunet-Lahary, Titouan; Shimamura, Tatsuro; Hayashi, Masahiro; Nomura, Norimichi; Hirasawa, Kouta; Shimizu, Tetsuya; Yamashita, Masao; Tsutsumi, Naotaka; Suehiro, Yuta; Kojima, Keiichi; Sudo, Yuki; Tamura, Takashi; Iwanari, Hiroko; Hamakubo, Takao; Iwata, So; Okazaki, Kei-ichi; Hirai, Teruhisa; Yamashita, Atsuko
err分享
err收藏
Editorial: Recent advances in computational modelling of biomolecular complexes
errFRONTIERS IN CHEMISTRY
IF4.2
err2023-04-11
err1
errOAAI
errPoblete, Simon; Pantano, Sergio; Okazaki, Kei-ichi; Liang, Zhongjie; Kremer, Kurt; Poma, Adolfo B.
err分享
err收藏
Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota
errNATURE COMMUNICATIONS
IF15.7
err2023-04-03
err8
errOAAI
errJaunet-Lahary, Titouan; Shimamura, Tatsuro; Hayashi, Masahiro; Nomura, Norimichi; Hirasawa, Kouta; Shimizu, Tetsuya; Yamashita, Masao; Tsutsumi, Naotaka; Suehiro, Yuta; Kojima, Keiichi; Sudo, Yuki; Tamura, Takashi; Iwanari, Hiroko; Hamakubo, Takao; Iwata, So; Okazaki, Kei-ichi; Hirai, Teruhisa; Yamashita, Atsuko
err分享
err收藏
Molecular mechanism on forcible ejection of ATPase inhibitory factor 1 from mitochondrial ATP synthase
errNATURE COMMUNICATIONS
IF15.7
err2023-03-31
err14
errOAAI
errKobayashi, Ryohei; Ueno, Hiroshi; Okazaki, Kei-ichi; Noji, Hiroyuki
err分享
err收藏
Protein folds vs. protein folding: Differing questions, different challenges
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2022-12-29
err51
errOAAI
errChen, Shi-Jie; Hassan, Mubashir; Jernigan, Robert L.; Jia, Kejue; Kihara, Daisuke; Kloczkowski, Andrzej; Kotelnikov, Sergei; Kozakov, Dima; Liang, Jie; Liwo, Adam; Matysiak, Silvina; Meller, Jarek; Micheletti, Cristian; Mitchell, Julie C.; Mondal, Sayantan; Nussinov, Ruth; Okazaki, Kei-ichi; Padhorny, Dzmitry; Skolnick, Jeffrey; Sosnick, Tobin R.; Stan, George; Vakser, Ilya; Zou, Xiaoqin; Rose, George D.
err分享
err收藏
Explaining reaction coordinates of alanine dipeptide isomerization obtained from deep neural networks using Explainable Artificial Intelligence (XAI)
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2022-04-21
err29
errOAAI
errKikutsuji, Takuma; Mori, Yusuke; Okazaki, Kei-ichi; Mori, Toshifumi; Kim, Kang; Matubayasi, Nobuyuki
err分享
err收藏
Optimizing Go-MARTINI Coarse-Grained Model for F-BAR Protein on Lipid Membrane脂质膜上f-bar蛋白的Go-MARTINI粗粒化模型优化
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2021-02-22
err31
errOAAI
errMahmood, Md. Iqbal; Poma, Adolfo B.; Okazaki, Kei-ichi
err分享
err收藏
Learning reaction coordinates via cross-entropy minimization: Application to alanine dipeptide
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2020-08-05
err26
errOAAI
errMori, Yusuke; Okazaki, Kei-ichi; Mori, Toshifumi; Kim, Kang; Matubayasi, Nobuyuki
err分享
err收藏
Curvature induction and sensing of the F-BAR protein Pacsin1 on lipid membranes via molecular dynamics simulations
errSCIENTIFIC REPORTS
IF3.9
err2019-10-10
err28
errOAAI
errMahmood, Md. Iqbal; Noguchi, Hiroshi; Okazaki, Kei-ichi
err分享
err收藏
Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting
errNATURE COMMUNICATIONS
IF15.7
err2019-04-15
err33
errOAAI
errOkazaki, Kei-ichi; Woehlert, David; Warnau, Judith; Jung, Hendrik; Yildiz, Oezkan; Kuehlbrandt, Werner; Hummer, Gerhard
err分享
err收藏
Processive Chitinase is Burnt-Bridge Brownian Motor Operated by Fast Catalysis after Peeling Rail from Crystalline Chitin
errBIOPHYSICAL JOURNAL
IF3.1
err2019-02-01
err0
errOAAI
errNakamura, Akihiko; Okazaki, Kei-ichi; Furuta, Tadaomi; Sakurai, Minoru; Iino, Ryota
err分享
err收藏
Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin进行性几丁质酶是从结晶几丁质上剥离铁轨后通过快速催化操作的布朗单轨
errNATURE COMMUNICATIONS
IF15.7
err2018-09-19
err49
errOAAI
errNakamura, Akihiko; Okazaki, Kei-ichi; Furuta, Tadaomi; Sakurai, Minoru; Iino, Ryota
err分享
err收藏
Transition path sampling of rare events by shooting from the top通过从顶部射击对稀有事件进行过渡路径采样
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2017-08-14
err48
errOAAI
errJung, Hendrik; Okazaki, Kei-ichi; Hummer, Gerhard
err分享
err收藏
Conformational Transition from Catalytic Dwell to ATP-Binding Dwell in F1-ATPase
errBIOPHYSICAL JOURNAL
IF3.1
err2017-02-01
err0
errOAAI
errOkazaki, Kei-ichi; Sugawa, Mitsuhiro; Hummer, Gerhard
err分享
err收藏
F1-ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements同时进行单分子FRET和旋转测量的F1-ATPase构象循环
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2016-05-10
err27
errOAAI
errSugawa, Mitsuhiro; Okazaki, Kei-ichi; Kobayashi, Masaru; Matsui, Takashi; Hummer, Gerhard; Masaike, Tomoko; Nishizaka, Takayuki
err分享
err收藏

研究方向

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合作学者
合作期刊
R
Ruth Nussinov
H 指数: 131 · 论文数: 1.2K
P
Peter G. Wolynes
H 指数: 111 · 论文数: 639
G
Gerhard Hummer
H 指数: 110 · 论文数: 731
J
José N. Onuchic
H 指数: 104 · 论文数: 613
K
Kurt Kremer
H 指数: 93 · 论文数: 548
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