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Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope (vol 15, 9343, 2024) 利用Tumoroscope对肿瘤异质性进行整合的空间与基因组分析（vol 15, 9343, 2024） Shafighi, Shadi; Geras, Agnieszka; Jurzysta, Barbara; Naeini, Alireza Sahaf; Filipiuk, Igor; Raczkowska, Alicja; Toosi, Hosein; Koperski, Lukasz; Thrane, Kim; Engblom, Camilla; Mold, Jeff E.; Chen, Xinsong; Hartman, Johan; Nowis, Dominika; Carbone, Alessandra; Lagergren, Jens; Szczurek, Ewa 分享 收藏
CaClust: linking genotype to transcriptional heterogeneity of follicular lymphoma using BCR and exomic variants Oksza-Orzechowski, Kazimierz; Quinten, Edwin; Shafighi, Shadi; Kielbasa, Szymon M.; van Kessel, Hugo W.; de Groen, Ruben A. L.; Vermaat, Joost S. P.; Yanez, Julieta H. Sepulveda; Navarrete, Marcelo A.; Veelken, Hendrik; van Bergen, Cornelis A. M.; Szczurek, Ewa 分享 收藏
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Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data Celloscope: 空间转录组学数据中标记基因驱动的细胞类型反卷积的概率模型 Geras, Agnieszka; Shafighi, Shadi Darvish; Domzal, Kacper; Filipiuk, Igor; Raczkowski, Lukasz; Szymczak, Paulina; Toosi, Hosein; Kaczmarek, Leszek; Koperski, Lukasz; Lagergren, Jens; Nowis, Dominika; Szczurek, Ewa 分享 收藏
Synthetic lethality prediction in DNA damage repair, chromatin remodeling and the cell cycle using multi-omics data from cell lines and patients. Markowska, Magda; Budzinska, Magdalena A.; Coenen-Stass, Anna; Kang, Senbai; Kizling, Ewa; Kolmus, Krzysztof; Koras, Krzysztof; Staub, Eike; Szczurek, Ewa 分享 收藏
Predictive performance of multi-model ensemble forecasts of COVID-19 across European nations Sherratt, Katharine; Gruson, Hugo; Grah, Rok; Johnson, Helen; Niehus, Rene; Prasse, Bastian; Sandmann, Frank; Deuschel, Jannik; Wolffram, Daniel; Abbott, Sam; Ullrich, Alexander; Gibson, Graham; Ray, Evan L.; Reich, Nicholas G.; Sheldon, Daniel; Wang, Yijin; Wattanachit, Nutcha; Wang, Lijing; Trnka, Jan; Obozinski, Guillaume; Sun, Tao; Thanou, Dorina; Pottier, Loic; Krymova, Ekaterina; Meinke, Jan H.; Barbarossa, Maria Vittoria; Leithauser, Neele; Mohring, Jan; Schneider, Johanna; Wlazlo, Jaroslaw; Fuhrmann, Jan; Lange, Berit; Rodiah, Isti; Baccam, Prasith; Gurung, Heidi; Stage, Steven; Suchoski, Bradley; Budzinski, Jozef; Walraven, Robert; Villanueva, Inmaculada; Tucek, Vit; Smid, Martin; Zajicek, Milan; Perez Alvarez, Cesar; Reina, Borja; Bosse, Nikos I.; Meakin, Sophie R.; Castro, Lauren; Fairchild, Geoffrey; Michaud, Isaac; Osthus, Dave; Alaimo Di Loro, Pierfrancesco; Maruotti, Antonello; Eclerova, Veronika; Kraus, Andrea; Kraus, David; Pribylova, Lenka; Dimitris, Bertsimas; Li, Michael Lingzhi; Saksham, Soni; Dehning, Jonas; Mohr, Sebastian; Priesemann, Viola; Redlarski, Grzegorz; Bejar, Benjamin; Ardenghi, Giovanni; Parolini, Nicola; Ziarelli, Giovanni; Bock, Wolfgang; Heyder, Stefan; Hotz, Thomas; Singh, David E.; Guzman-Merino, Miguel; Aznarte, Jose L.; Morina, David; Alonso, Sergio; Alvarez, Enric; Lopez, Daniel; Prats, Clara; Burgard, Jan Pablo; Rodloff, Arne; Zimmermann, Tom; Kuhlmann, Alexander; Zibert, Janez; Pennoni, Fulvia; Divino, Fabio; Catala, Marti; Lovison, Gianfranco; Giudici, Paolo; Tarantino, Barbara; Bartolucci, Francesco; Jona Lasinio, Giovanna; Mingione, Marco; Farcomeni, Alessio; Srivastava, Ajitesh; Montero-Manso, Pablo; Adiga, Aniruddha; Hurt, Benjamin; Lewis, Bryan; Marathe, Madhav; Porebski, Przemyslaw; Venkatramanan, Srinivasan; Bartczuk, Rafal P.; Dreger, Filip; Gambin, Anna; Gogolewski, Krzysztof; Gruziel-Slomka, Magdalena; Krupa, Bartosz; Moszynski, Antoni; Niedzielewski, Karol; Nowosielski, Jedrzej; Radwan, Maciej; Rakowski, Franciszek; Semeniuk, Marcin; Szczurek, Ewa; Zielinski, Jakub; Kisielewski, Jan; Pabjan, Barbara; Holger, Kirsten; Kheifetz, Yuri; Scholz, Markus; Przemyslaw, Biecek; Bodych, Marcin; Filinski, Maciej; Idzikowski, Radoslaw; Krueger, Tyll; Ozanski, Tomasz; Bracher, Johannes; Funk, Sebastian 分享 收藏
Discovering highly potent antimicrobial peptides with deep generative model HydrAMP 用深度生成模型hydamp发现高效抗微生物肽 Szymczak, Paulina; Mozejko, Marcin; Grzegorzek, Tomasz; Jurczak, Radoslaw; Bauer, Marta; Neubauer, Damian; Sikora, Karol; Michalski, Michal; Sroka, Jacek; Setny, Piotr; Kamysz, Wojciech; Szczurek, Ewa 分享 收藏
SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data SIEVE: 从单细胞DNA测序数据联合推断单核苷酸变异和细胞系统发育 Kang, Senbai; Borgsmueller, Nico; Valecha, Monica; Kuipers, Jack; Alves, Joao M.; Prado-Lopez, Sonia; Chantada, Debora; Beerenwinkel, Niko; Posada, David; Szczurek, Ewa 分享 收藏
Deep learning-based tumor microenvironment segmentation is predictive of tumor mutations and patient survival in non-small-cell lung cancer 基于深度学习的肿瘤微环境分割可预测非小细胞肺癌的肿瘤突变和患者生存 Raczkowski, Lukasz; Pasnik, Iwona; Kukielka, Michal; Nicos, Marcin; Budzinska, Magdalena A.; Kucharczyk, Tomasz; Szumilo, Justyna; Krawczyk, Pawel; Crosetto, Nicola; Szczurek, Ewa 分享 收藏
Data-driven case fatality rate estimation for the primary lineage of SARS-CoV-2 in Poland Gogolewski, Krzysztof; Miasojedow, Blazej; Sadkowska-Todys, Malgorzata; Stepien, Malgorzata; Demkow, Urszula; Lech, Agnieszka; Szczurek, Ewa; Rabczenko, Daniel; Rosinska, Magdalena; Gambin, Anna 分享 收藏
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Risk assessment of COVID-19 epidemic resurgence in relation to SARS-CoV-2 variants and vaccination passes Krueger, Tyll; Gogolewski, Krzysztof; Bodych, Marcin; Gambin, Anna; Giordano, Giulia; Cuschieri, Sarah; Czypionka, Thomas; Perc, Matjaz; Petelos, Elena; Rosinska, Magdalena; Szczurek, Ewa 分享 收藏
The benefits, costs and feasibility of a low incidence COVID-19 strategy Czypionka, Thomas; Iftekhar, Emil N.; Prainsack, Barbara; Priesemann, Viola; Bauer, Simon; Valdez, Andre Calero; Cuschieri, Sarah; Glaab, Enrico; Grill, Eva; Krutzinna, Jenny; Lionis, Christos; Machado, Helena; Martins, Carlos; Pavlakis, George N.; Perc, Matjaz; Petelos, Elena; Pickersgill, Martyn; Skupin, Alexander; Schernhammer, Eva; Szczurek, Ewa; Tsiodras, Sotirios; Willeit, Peter; Wilmes, Paul 分享 收藏
Towards a European strategy to address the COVID-19 pandemic Priesemann, Viola; Balling, Rudi; Bauer, Simon; Beutels, Philippe; Valdez, Andre Calero; Cuschieri, Sarah; Czypionka, Thomas; Dumpis, Uga; Glaab, Enrico; Grill, Eva; Hotulainen, Pirta; Iftekhar, Emil N.; Krutzinna, Jenny; Lionis, Christos; Machado, Helena; Martins, Carlos; Mckee, Martin; Pavlakis, George N.; Perc, Matjaz; Petelos, Elena; Pickersgill, Martyn; Prainsack, Barbara; Rockloev, Joacim; Schernhammer, Eva; Szczurek, Ewa; Tsiodras, Sotirios; Van Gucht, Steven; Willeit, Peter 分享 收藏
A look into the future of the COVID-19 pandemic in Europe: an expert consultation 欧洲新型冠状病毒肺炎大流行的未来展望: 专家咨询 Iftekhar, Emil Nafis; Priesemann, Viola; Balling, Rudi; Bauer, Simon; Beutels, Philippe; Valdez, Andre Calero; Cuschieri, Sarah; Czypionka, Thomas; Dumpis, Uga; Glaab, Enrico; Grill, Eva; Hanson, Claudia; Hotulainen, Pirta; Klimek, Peter; Kretzschmar, Mirjam; Kruger, Tyll; Krutzinna, Jenny; Low, Nicola; Machado, Helena; Martins, Carlos; McKee, Martin; Mohr, Sebastian Bernd; Nassehi, Armin; Perc, Matjaz; Petelos, Elena; Pickersgill, Martyn; Prainsack, Barbara; Rocklov, Joacim; Schernhammer, Eva; Staines, Anthony; Szczurek, Ewa; Tsiodras, Sotirios; Van Gucht, Steven; Willeit, Peter 分享 收藏
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CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells Shafighi, Shadi Darvish; Kielbasa, Szymon M.; Sepulveda-Yanez, Julieta; Monajemi, Ramin; Cats, Davy; Mei, Hailiang; Menafra, Roberta; Kloet, Susan; Veelken, Hendrik; van Bergen, Cornelis A. M.; Szczurek, Ewa 分享 收藏
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