Ryan R. Wick - Publications, H-index & Citations

Ryan R. Wick

the department of microbiology and immunology

44H指数

193论文数

2.6W被引数

收录论文 52

发表时间

Microbiota and resistome dynamics in untreated and treated wastewater: A ten-month study leveraging RNA-probe capture and subspecies-level metagenomics 微生物组和抗性组在未处理与处理废水中的动态变化：一项利用RNA探针捕获和亚种水平元基因组学的十个月研究

Journal of Hazardous Materials

IF11.3

2025-11-20

OAAI

Kenneth Lindstedt; Adriana Osińska; Ahmed Bargheet; Henning Sørum; Ryan R. Wick; Kathryn E. Holt; Veronika Kuchařová Pettersen; Arnfinn Sundsfjord; Yngvild Wasteson

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi Typhi Mykrobe：针对伤寒杆菌 Salmonella Typhi 的快速且准确的谱系鉴定以及直接从序列读数进行的抗菌药物耐药性基因分型

Genome Medicine

IF11.2

2025-10-24

OAAI

Danielle J. Ingle; Jane Hawkey; Martin Hunt; Zamin Iqbal; Jacqueline A. Keane; Ayorinde O. Afolayan; Niyaz Ahmed; Saadia Andleeb; Philip M. Ashton; Isaac I. Bogoch; Megan E. Carey; Marie Anne Chattaway; John A. Crump; Paula Diaz Guevara; Benjamin P. Howden; Hidemasa Izumiya; Jobin John Jacob; Louise M. Judd; Arti Kapil; Karen H. Keddy; Justin Y. Kim; Myron M. Levine; Masatomo Morita; Satheesh Nair; Sophie Octavia; Iruka N. Okeke; Precious E. Osadebamwen; Sadia Isfat Ara Rahman; Assaf Rokney; David A. Rasko; Varun Shamanna; Michael J. Sikorski; Anthony M. Smith; Gabriel T. Sunmonu; Kaitlin A. Tagg; Ryan R. Wick; Zoe A. Dyson; Kathryn E. Holt

A genome-wide One Health study of Klebsiella pneumoniae in Norway reveals overlapping populations but few recent transmission events across reservoirs 一项关于挪威克雷伯氏肺炎杆菌的全基因组“一种健康”研究揭示了不同宿主间存在重叠的种群，但近期传播事件较少。

GENOME MEDICINE

IF11.2

2025-04-28

OAAI

Hetland, Marit A. K.; Winkler, Mia A.; Kaspersen, Hakon P.; Hakonsholm, Fredrik; Bakksjo, Ragna-Johanne; Bernhoff, Eva; Delgado-Blas, Jose F.; Brisse, Sylvain; Correia, Annapaula; Fostervold, Aasmund; Lam, Margaret M. C.; Lunestad, Bjorn-Tore; Marathe, Nachiket P.; Raffelsberger, Niclas; Samuelsen, Orjan; Sunde, Marianne; Sundsfjord, Arnfinn; Urdahl, Anne Margrete; Wick, Ryan R.; Lohr, Iren H.; Holt, Kathryn E.

Genomic and functional analysis of rmp locus variants in Klebsiella pneumoniae 克雷伯氏肺炎杆菌rmp位点的基因组与功能分析

GENOME MEDICINE

IF11.2

2025-04-09

OAAI

Lam, Margaret M. C.; Salisbury, Stephen M.; Treat, Logan P.; Wick, Ryan R.; Judd, Louise M.; Wyres, Kelly L.; Brisse, Sylvain; Walker, Kimberly A.; Miller, Virginia L.; Holt, Kathryn E.

The complete genome sequence of the crayfish pathogen Candidatus Paracoxiella cheracis n.g. n.sp. provides insight into pathogenesis and the phylogeny of the Coxiellaceae family

MSPHERE

IF3.1

2025-03-01

OAAI

Ingle, Danielle J.; Walsh, Calum J.; Samuel, Genevieve R.; Wick, Ryan R.; Davidovich, Nadav; Fiocchi, Eleonora; Judd, Louise M.; Elliman, Jennifer; Owens, Leigh; Stinear, Timothy P.; Basso, Andrea; Pretto, Tobia; Newton, Hayley J.

Targeted sequencing of Enterobacterales bacteria using CRISPR-Cas9 enrichment and Oxford Nanopore Technologies 使用CRISPR-Cas9富集和牛津纳米孔技术对肠杆菌细菌进行靶向测序

MSYSTEMS

IF4.6

2025-02-18

OAAI

Cottingham, Hugh; Judd, Louise M.; Wisniewski, Jessica A.; Wick, Ryan R.; Stanton, Thomas D.; Vezina, Ben; Macesic, Nenad; Peleg, Anton Y.; Okeke, Iruka N.; Holt, Kathryn E.; Hawkey, Jane

Exploring SNP filtering strategies: the influence of strict vs soft core

MICROBIAL GENOMICS

IF4

2025-01-15

OAAI

Taouk, Mona L.; Featherstone, Leo A.; Taiaroa, George; Seemann, Torsten; Ingle, Danielle J.; Stinear, Timothy P.; Wick, Ryan R.

Diversity, functional classification and genotyping of SHV /3-lactamases in Klebsiella pneumoniae

MICROBIAL GENOMICS

IF4

2024-10-21

OAAI

Tsang, Kara K.; Lam, Margaret M. C.; Wick, Ryan R.; Wyres, Kelly L.; Bachman, Michael; Baker, Stephen; Barry, Katherine; Brisse, Sylvain; Campino, Susana; Chiaverini, Alexandra; Cirillo, Daniela Maria; Clark, Taane; Corander, Jukka; Corbella, Marta; Cornacchia, Alessandra; Cuenod, Aline; D'Alterio, Nicola; Di Marco, Federico; Donado-Godoy, Pilar; Egli, Adrian; Farzana, Refath; Feil, Edward J.; Fostervold, Aasmund; Gorrie, Claire L.; Hassan, Brekhna; Hetland, Marit Andrea Klokkhammer; Hoa, Le Nguyen Minh; Hoi, Le Thi; Howden, Benjamin; Ikhimiukor, Odion O.; Jenney, Adam W. J.; Kaspersen, Hakon; Khokhar, Fahad; Leangapichart, Thongpan; Ligowska-Marzeta, Malgorzata; Lohr, Iren Hoyland; Long, Scott W.; Mathers, Amy J.; Mcarthur, Andrew G.; Nagaraj, Geetha; Oaikhena, Anderson O.; Okeke, Iruka N.; Perdigao, Joao; Parikh, Hardik; Pham, My H.; Pomilio, Francesco; Raffelsberger, Niclas; Rakotondrasoa, Andriniaina; Kumar, K. L. Ravi; Roberts, Leah W.; Rodrigues, Carla; Samuelsen, Orjan; Sands, Kirsty; Sassera, Davide; Seth-Smith, Helena; Shamanna, Varun; Sherry, Norelle L.; Sia, Sonia; Spadar, Anton; Stoesser, Nicole; Sunde, Marianne; Sundsfjord, Arnfinn; Thach, Pham Ngoc; Thomson, Nicholas R.; Thorpe, Harry A.; Torok, M. Estee; Trang, Van Dinh; Trung, Nguyen Vu; Vornhagen, Jay; Walsh, Timothy; Warne, Ben; Wilson, Hayley; Wright, Gerard D.; Holt, Kathryn E.

Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data

ELIFE

IF0

2024-10-10

OAAI

Hall, Michael B.; Wick, Ryan R.; Judd, Louise M.; Nguyen, An N.; Steinig, Eike J.; Xie, Ouli; Davies, Mark; Seemann, Torsten; Stinear, Timothy P.; Coin, Lachlan

How low can you go? Short- read polishing of Oxford Nanopore bacterial genome assemblies 你能走多低？牛津纳米孔细菌基因组组装的短读抛光

MICROBIAL GENOMICS

IF4

2024-06-04

OAAI

Bouras, George; Judd, Louise M.; Edwards, Robert A.; Vreugde, Sarah; Stinear, Timothy P.; Wick, Ryan R.

Hybracter: enabling scalable, automated, complete and accurate bacterial genome assemblies Hybracter: 实现可扩展、自动化、完整和准确的细菌基因组组装

MICROBIAL GENOMICS

IF4

2024-05-08

OAAI

Bouras, George; Houtak, Ghais; Wick, Ryan R.; Mallawaarachchi, Vijini; Roach, Michael J.; Papudeshi, Bhavya; Judd, Lousie M.; Sheppard, Anna E.; Edwards, Robert A.; Vreugde, Sarah

Nanopore-only assemblies for genomic surveillance of the global priority drug- resistant pathogen, Klebsiella pneumoniae (vol 9, 000936, 2023)

MICROBIAL GENOMICS

IF4

2023-08-09

OAAI

Foster-Nyarko, Ebenezer; Cottingham, Hugh; Wick, Ryan R.; Judd, Louise M.; Lam, Margaret M. C.; Wyres, Kelly L.; Stanton, Thomas D.; Tsang, Kara K.; David, Sophia; Aanensen, David M.; Brisse, Sylvain; Holt, Kathryn E.

Polishing De Novo Nanopore Assemblies of Bacteria and Eukaryotes With FMLRC2 用FMLRC2抛光细菌和真核生物的从头纳米孔组件

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2023-03-03

OAAI

Mak, Q. X. Charles; Wick, Ryan R.; Holt, James Matthew; Wang, Jeremy R.

Nanopore-only assemblies for genomic surveillance of the global priority drug- resistant pathogen, Klebsiella pneumoniae

MICROBIAL GENOMICS

IF4

2023-02-08

OAAI

ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting

GENOME MEDICINE

IF11.2

2022-08-23

OAAI

Hawkey, Jane; Wyres, Kelly L.; Judd, Louise M.; Harshegyi, Taylor; Blakeway, Luke; Wick, Ryan R.; Jenney, Adam W. J.; Holt, Kathryn E.

Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen

NATURE COMMUNICATIONS

IF15.7

2022-05-31

OAAI

Gorrie, Claire L.; Mirceta, Mirjana; Wick, Ryan R.; Judd, Louise M.; Lam, Margaret M. C.; Gomi, Ryota; Abbott, Iain J.; Thomson, Nicholas R.; Strugnell, Richard A.; Pratt, Nigel F.; Garlick, Jill S.; Watson, Kerrie M.; Hunter, Peter C.; Pilcher, David V.; McGloughlin, Steve A.; Spelman, Denis W.; Wyres, Kelly L.; Jenney, Adam W. J.; Holt, Kathryn E.

Linear plasmids in Klebsiella and other Enterobacteriaceae 克雷伯菌和其他肠杆菌科细菌中的线性质粒

MICROBIAL GENOMICS

IF4

2022-04-26

OAAI

Hawkey, Jane; Cottingham, Hugh; Tokolyi, Alex; Wick, Ryan R.; Judd, Louise M.; Cerdeira, Louise; Garcia, Doroti de Oliveira; Wyres, Kelly L.; Holt, Kathryn E.

Kaptive 2.0: updated capsule and lipopolysaccharide locus typing for the Klebsiella pneumoniae species complex Kaptive 2.0: 肺炎克雷伯菌物种复合物的更新胶囊和脂多糖基因座分型

MICROBIAL GENOMICS

IF4

2022-03-01

114

OAAI

Lam, Margaret M. C.; Wick, Ryan R.; Judd, Louise M.; Holt, Kathryn E.; Wyres, Kelly L.

Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales (vol 14, pg 1713, 2020)肠杆菌表面多糖合成位点的多样性和进化 (第14卷，1713页，2020)

ISME JOURNAL

IF10

2022-01-19

OAAI

Holt, Kathryn E.; Lassalle, Florent; Wyres, Kelly L.; Wick, Ryan; Mostowy, Rafal J.

Silent spread of mobile colistin resistance gene mcr-9.1 on IncHI2 'superplasmids' in clinical carbapenem-resistant Enterobacterales

CLINICAL MICROBIOLOGY AND INFECTION

IF8.5

2021-12-01

OAAI

Macesic, Nenad; V. Blakeway, Luke; Stewart, James D.; Hawkey, Jane; Wyres, Kelly L.; Judd, Louise M.; Wick, Ryan R.; Jenney, Adam W.; Holt, Kathryn E.; Peleg, Anton Y.

研究方向