未登录 PathwayPilot: A User-Friendly Tool for Visualizing and Navigating Metabolic Pathways Vande Moortele, Tibo; Verschaffelt, Pieter; Huang, Qingyao; Doncheva, Nadezhda T.; Holstein, Tanja; Jachmann, Caroline; Dawyndt, Peter; Martens, Lennart; Mesuere, Bart; van den Bossche, Tim 分享 收藏
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The STRING database in 2025: protein networks with directionality of regulation 字符串数据库2025年: 具有调控方向性的蛋白质网络 Szklarczyk, Damian; Nastou, Katerina; Koutrouli, Mikaela; Kirsch, Rebecca; Mehryary, Farrokh; Hachilif, Radja; Hu, Dewei; Peluso, Matteo E.; Huang, Qingyao; Fang, Tao; Doncheva, Nadezhda T.; Pyysalo, Sampo; Bork, Peer; Jensen, Lars J.; von Mering, Christian 分享 收藏
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A quantitative and site-specific atlas of the citrullinome reveals widespread existence of citrullination and insights into PADI4 substrates Rebak, Alexandra S.; Hendriks, Ivo A.; Elsborg, Jonas D.; Buch-Larsen, Sara C.; Nielsen, Claus H.; Terslev, Lene; Kirsch, Rebecca; Damgaard, Dres; Doncheva, Nadezhda T.; Lennartsson, Caroline; Rykaer, Martin; Jensen, Lars J.; Christophorou, Maria A.; Nielsen, Michael L. 分享 收藏
Alteration of microglial metabolism and inflammatory profile contributes to neurotoxicity in a hiPSC-derived microglia model of frontotemporal dementia 3 在hiPSC衍生的额颞叶痴呆小胶质细胞模型中，小胶质细胞代谢和炎症特征的改变有助于神经毒性3 Haukedal, Henriette; Lorenzen, Signe Syshoj; Westi, Emil Winther; Corsi, Giulia I.; Gadekar, Veerendra P.; McQuade, Amanda; Davtyan, Hayk; Doncheva, Nadezhda T.; Schmid, Benjamin; Chandrasekaran, Abinaya; Seemann, Stefan E.; Cirera, Susanna; Blurton-Jones, Mathew; Meyer, Morten; Gorodkin, Jan; Aldana, Blanca I.; Freude, Kristine 分享 收藏
Arena3Dweb: interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration Kokoli, Maria; Karatzas, Evangelos; Baltoumas, Fotis A.; Schneider, Reinhard; Pafilis, Evangelos; Paragkamian, Savvas; Doncheva, Nadezhda T.; Jensen, Lars Juhl; Pavlopoulos, Georgios A. 分享 收藏
The transcriptomic landscape of neurons carrying PSEN1 mutations reveals changes in extracellular matrix components and non-coding gene expression Corsi, Giulia I.; Gadekar, Veerendra P.; Haukedal, Henriette; Doncheva, Nadezhda T.; Anthon, Christian; Ambardar, Sheetal; Palakodeti, Dasaradhi; Hyttel, Poul; Freude, Kristine; Seemann, Stefan E.; Gorodkin, Jan 分享 收藏
Golgi fragmentation - One of the earliest organelle phenotypes in Alzheimer's disease neurons 高尔基碎片-阿尔茨海默病神经元最早的细胞器表型之一 Haukedal, Henriette; Corsi, Giulia I.; Gadekar, Veerendra P.; Doncheva, Nadezhda T.; Kedia, Shekhar; de Haan, Noortje; Chandrasekaran, Abinaya; Jensen, Pia; Schionning, Pernille; Vallin, Sarah; Marlet, Frederik Ravnkilde; Poon, Anna; Pires, Carlota; Agha, Fawzi Khoder; Wandall, Hans H.; Cirera, Susanna; Simonsen, Anja Hviid; Nielsen, Troels Tolstrup; Nielsen, Jorgen Erik; Hyttel, Poul; Muddashetty, Ravi; Aldana, Blanca I.; Gorodkin, Jan; Nair, Deepak; Meyer, Morten; Larsen, Martin Rossel; Freude, Kristine 分享 收藏
Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis 跨物种高分辨率转录组分析提示溃疡性结肠炎的生物标志物和治疗靶点 Yarani, Reza; Palasca, Oana; Doncheva, Nadezhda T.; Anthon, Christian; Pilecki, Bartosz; Svane, Cecilie A. S.; Mirza, Aashiq H.; Litman, Thomas; Holmskov, Uffe; Bang-Berthelsen, Claus H.; Vilien, Mogens; Jensen, Lars J.; Gorodkin, Jan; Pociot, Flemming 分享 收藏
The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest STRING数据库2023年: 任何感兴趣的测序基因组的蛋白质-蛋白质关联网络和功能富集分析 Szklarczyk, Damian; Kirsch, Rebecca; Koutrouli, Mikaela; Nastou, Katerina; Mehryary, Farrokh; Hachilif, Radja; Gable, Annika L.; Fang, Tao; Doncheva, Nadezhda T.; Pyysalo, Sampo; Bork, Peer; Jensen, Lars J.; von Mering, Christian 分享 收藏
The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production Geissler, Adrian S.; Poulsen, Line D.; Doncheva, Nadezhda T.; Anthon, Christian; Seemann, Stefan E.; Gonzalez-Tortuero, Enrique; Breuener, Anne; Jensen, Lars J.; Hjort, Carsten; Vinther, Jeppe; Gorodkin, Jan 分享 收藏
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Astrocytic reactivity triggered by defective autophagy and metabolic failure causes neurotoxicity in frontotemporal dementia type 3 自噬缺陷和代谢衰竭引发的星形胶质细胞反应性导致额颞叶痴呆3型的神经毒性 Chandrasekaran, Abinaya; Dittlau, Katarina Stoklund; Corsi, Giulia, I; Haukedal, Henriette; Doncheva, Nadezhda T.; Ramakrishna, Sarayu; Ambardar, Sheetal; Salcedo, Claudia; Schmidt, Sissel, I; Zhang, Yu; Cirera, Susanna; Pihl, Maria; Schmid, Benjamin; Nielsen, Troels Tolstrup; Nielsen, Jorgen E.; Kolko, Miriam; Kobolak, Julianna; Dinnyes, Andras; Hyttel, Poul; Palakodeti, Dasaradhi; Gorodkin, Jan; Muddashetty, Ravi S.; Meyer, Morten; Aldana, Blanca, I; Freude, Kristine K. 分享 收藏
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets (vol 49, pg D605, 2021) Szklarczyk, Damian; Gable, Annika L.; Nastou, Katerina C.; Lyon, David; Kirsch, Rebecca; Pyysalo, Sampo; Doncheva, Nadezhda T.; Legeay, Marc; Fang, Tao; Bork, Peer; Jensen, Lars J.; von Mering, Christian 分享 收藏
Epistatic interactions promote persistence of NS3-Q80K in HCV infection by compensating for protein folding instability Dultz, Georg; Srikakulam, Sanjay K.; Konetschnik, Michael; Shimakami, Tetsuro; Doncheva, Nadezhda T.; Dietz, Julia; Sarrazin, Christoph; Biondi, Ricardo M.; Zeuzem, Stefan; Tampe, Robert; Kalinina, Olga, V; Welsch, Christoph 分享 收藏
Human pathways in animal models: possibilities and limitations Doncheva, Nadezhda T.; Palasca, Oana; Yarani, Reza; Litman, Thomas; Anthon, Christian; Groenen, Martien A. M.; Stadler, Peter F.; Pociot, Flemming; Jensen, Lars J.; Gorodkin, Jan 分享 收藏
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets 字符串数据库2021年: 可定制的蛋白质-蛋白质网络，以及用户上传的基因/测量集的功能表征 Szklarczyk, Damian; Gable, Annika L.; Nastou, Katerina C.; Lyon, David; Kirsch, Rebecca; Pyysalo, Sampo; Doncheva, Nadezhda T.; Legeay, Marc; Fang, Tao; Bork, Peer; Jensen, Lars J.; von Mering, Christian 分享 收藏
Transcriptome landscape of protein-coding genes and long noncoding RNAs in the colon and blood of DSS-induced mouse model of Acute ulcerative colitis Yarani, R.; Palasca, O.; Doncheva, N. Tsankova; Anthon, C.; Pilecki, B.; Litman, T.; Holmskov, U.; Jensen, L. J.; Gorodkin, J.; Pociot, F. 分享 收藏
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets STRING v11: 覆盖范围增加的蛋白质-蛋白质关联网络，支持全基因组实验数据集中的功能发现 Szklarczyk, Damian; Gable, Annika L.; Lyon, David; Junge, Alexander; Wyder, Stefan; Huerta-Cepas, Jaime; Simonovic, Milan; Doncheva, Nadezhda T.; Morris, John H.; Bork, Peer; Jensen, Lars J.; Mering, Christianvon 分享 收藏
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