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N

Narutoshi Kamiya

university of hyogo

29H指数
148论文数
2.6K被引数
收录论文 44
发表时间
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Elucidating Ligand Charge Effects in MR1 Cell-Surface Translocation Using Molecular Simulations通过分子模拟阐明MR1细胞表面转位中的配体电荷效应
errJournal of Chemical Information and Modeling
IF5.3
err2026-02-10
err0
PREAI
errToshiki Fujii; Mitsugu Araki; Shigeyuki Matsumoto; Biao Ma; Takao Otsuka; Gert-Jan Bekker; Narutoshi Kamiya; Hiroaki Ohno; Shinsuke Inuki; Yasushi Okuno
err分享
err收藏
Assessment of RNA Force Fields for Dynamic Docking of Small Molecules Using Multicanonical MD Simulations
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2025-10-01
err1
PREAI
errBekker, Gert-Jan; Fukunishi, Yoshifumi; Higo, Junichi; Kamiya, Narutoshi
err分享
err收藏
Structural dynamics of the Ca2+-regulated cutinase towards structure-based improvement of PET degradation activity
errINTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
IF8.5
err2024-11-01
err0
PREAI
errNumoto, Nobutaka; Kondo, Fumiya; Bekker, Gert-Jan; Liao, Zengwei; Yamashita, Mitsuaki; Iida, Akira; Ito, Nobutoshi; Kamiya, Narutoshi; Oda, Masayuki
err分享
err收藏
Molecular Dynamics Unveils Multiple-Site Binding of Inhibitors with Reduced Activity on the Surface of Dihydrofolate Reductase
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2024-10-12
err0
errOAAI
errAraki, Mitsugu; Ekimoto, Toru; Takemura, Kazuhiro; Matsumoto, Shigeyuki; Tamura, Yunoshin; Kokubo, Hironori; Bekker, Gert-Jan; Yamane, Tsutomu; Isaka, Yuta; Sagae, Yukari; Kamiya, Narutoshi; Ikeguchi, Mitsunori; Okuno, Yasushi
err分享
err收藏
Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-05-16
err0
PREAI
errBekker, Gert-Jan; Oshima, Kanji; Araki, Mitsugu; Okuno, Yasushi; Kamiya, Narutoshi
err分享
err收藏
Binding Mechanism of Riboswitch to Natural Ligand Elucidated by McMD-Based Dynamic Docking Simulations
errACS OMEGA
IF4.3
err2024-01-10
err2
errOAAI
errBekker, Gert-Jan; Fukunishi, Yoshifumi; Higo, Junichi; Kamiya, Narutoshi
err分享
err收藏
Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2023-12-26
err4
PREAI
errKanada, Ryo; Tokuhisa, Atsushi; Nagasaka, Yusuke; Okuno, Shingo; Amemiya, Koichiro; Chiba, Shuntaro; Bekker, Gert-Jan; Kamiya, Narutoshi; Kato, Koichiro; Okuno, Yasushi
err分享
err收藏
Mutual induced-fit mechanism drives binding between intrinsically disordered Bim and cryptic binding site of Bcl-xL
errCOMMUNICATIONS BIOLOGY
IF5.1
err2023-03-30
err6
errOAAI
errBekker, Gert-Jan; Araki, Mitsugu; Oshima, Kanji; Okuno, Yasushi; Kamiya, Narutoshi
err分享
err收藏
Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule
errSCIENTIFIC REPORTS
IF3.9
err2022-08-13
err7
errOAAI
errHigo, Junichi; Kasahara, Kota; Bekker, Gert-Jan; Ma, Benson; Sakuraba, Shun; Iida, Shinji; Kamiya, Narutoshi; Fukuda, Ikuo; Kono, Hidetoshi; Fukunishi, Yoshifumi; Nakamura, Haruki
err分享
err收藏
Accurate Binding Configuration Prediction of a G-Protein-Coupled Receptor to Its Antagonist Using Multicanonical Molecular Dynamics-Based Dynamic Docking
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2021-09-22
err12
PREAI
errBekker, Gert-Jan; Araki, Mitsugu; Oshima, Kanji; Okuno, Yasushi; Kamiya, Narutoshi
err分享
err收藏
Exploring ligand binding pathways on proteins using hypersound-accelerated molecular dynamics
errNATURE COMMUNICATIONS
IF15.7
err2021-05-14
err25
errOAAI
errAraki, Mitsugu; Matsumoto, Shigeyuki; Bekker, Gert-Jan; Isaka, Yuta; Sagae, Yukari; Kamiya, Narutoshi; Okuno, Yasushi
err分享
err收藏
Flexibility and Cell Permeability of Cyclic Ras-Inhibitor Peptides Revealed by the Coupled Nose-Hoover Equation
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2021-04-09
err2
PREAI
errMoritsugu, Kei; Takeuchi, Koh; Kamiya, Narutoshi; Higo, Junichi; Yasumatsu, Isao; Fukunishi, Yoshifumi; Fukuda, Ikuo
err分享
err收藏
Difference of binding modes among three ligands to a receptor mSin3B corresponding to their inhibitory activities
errSCIENTIFIC REPORTS
IF3.9
err2021-03-17
err8
errOAAI
errHayami, Tomonori; Kamiya, Narutoshi; Kasahara, Kota; Kawabata, Takeshi; Kurita, Jun-ichi; Fukunishi, Yoshifumi; Nishimura, Yoshifumi; Nakamura, Haruki; Higo, Junichi
err分享
err收藏
Cryptic-site binding mechanism of medium-sized Bcl-xL inhibiting compounds elucidated by McMD-based dynamic docking simulations
errSCIENTIFIC REPORTS
IF3.9
err2021-03-03
err13
errOAAI
errBekker, Gert-Jan; Fukuda, Ikuo; Higo, Junichi; Fukunishi, Yoshifumi; Kamiya, Narutoshi
err分享
err收藏
Structural basis of mutants of PET-degrading enzyme from Saccharomonospora viridis AHK190 with high activity and thermal stability
errPROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
IF2.8
err2020-12-24
err21
PREAI
errEmori, Miho; Numoto, Nobutaka; Senga, Akane; Bekker, Gert-Jan; Kamiya, Narutoshi; Kobayashi, Yuma; Ito, Nobutoshi; Kawai, Fusako; Oda, Masayuki
err分享
err收藏
Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2020-09-10
err11
errOAAI
errHigo, Junichi; Kawabata, Takeshi; Kusaka, Ayumi; Kasahara, Kota; Kamiya, Narutoshi; Fukuda, Ikuo; Mori, Kentaro; Hata, Yutaka; Fukunishi, Yoshifumi; Nakamura, Haruki
err分享
err收藏
Coarse-Grained Diffraction Template Matching Model to Retrieve Multiconformational Models for Biomolecule Structures from Noisy Diffraction Patterns
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2020-05-29
err4
errOAAI
errTokuhisa, Atsushi; Kanada, Ryo; Chiba, Shuntaro; Terayama, Kei; Isaka, Yuta; Ma, Biao; Kamiya, Narutoshi; Okuno, Yasushi
err分享
err收藏
Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking
errJOURNAL OF COMPUTATIONAL CHEMISTRY
IF4.8
err2020-04-08
err21
PREAI
errBekker, Gert-Jan; Araki, Mitsugu; Oshima, Kanji; Okuno, Yasushi; Kamiya, Narutoshi
err分享
err收藏
Mutual population-shift driven antibody-peptide binding elucidated by molecular dynamics simulations
errSCIENTIFIC REPORTS
IF3.9
err2020-01-29
err31
errOAAI
errBekker, Gert-Jan; Fukuda, Ikuo; Higo, Junichi; Kamiya, Narutoshi
err分享
err收藏
Thermal Stability of Single-Domain-Antibodies Estimated by MD Simulations
errBIOPHYSICAL JOURNAL
IF3.1
err2019-02-01
err0
errOAAI
errKamiya, Narutoshi; Ma, Benson; Bekker, Gert-Jan
err分享
err收藏

研究方向

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合作学者
合作期刊
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Yoshio Inoue
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H 指数: 75 · 论文数: 846
Y
Yoshihisa Kurachi
H 指数: 66 · 论文数: 496
A
Akira Kakizuka
H 指数: 60 · 论文数: 207
K
Kosuke Morikawa
H 指数: 60 · 论文数: 356
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