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Takashi Yoshidome

Tohoku University

H指数:19

被引数:1,038

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Structure-based prediction of gas diffusion property of catalytic layer of proton exchange membrane fuel cells via manifold learning and X-ray ptychographic nano-computed tomography

基于流形学习和X射线 Ptychographic 纳米计算机断层扫描的结构预测质子交换膜燃料电池催化层气体扩散性能

Journal of Power Sources

IF7.9

2026-03-260

OAAI

Deep GIST: Deep Learning Models for Predicting the Distribution of Hydration Thermodynamics around Proteins

Journal of Chemical Information and Modeling

IF5.3

2026-01-230

OAAI

PorousGen: An efficient algorithm for generating porous structures with accurate porosity and uniform density distribution

COMPUTATIONAL MATERIALS SCIENCE

IF3.3

2026-01-210

OAAI

Prediction of the hydration structures at the protein–protein Interface of dimers using deep learning

使用深度学习预测二聚体蛋白-蛋白界面处的水合结构

Chemical Physics Letters

IF3.1

2025-08-250

OAAI

Four-dimensional imaging for cryo-electron microscopy experiments using molecular simulations and manifold learning

JOURNAL OF COMPUTATIONAL CHEMISTRY

IF4.8

2023-12-191

OAAI

Mechanism of a high free-energy transduction efficiency of Bacillus PS3 F1-ATPase from the perspective of solvent entropy

JOURNAL OF MOLECULAR LIQUIDS

IF5.2

2023-12-011

PRE

Elucidating Conformational Dynamics and Thermostability of Designed Aromatic Clusters by Using Protein Cages

通过使用蛋白质笼阐明设计的芳族簇的构象动力学和热稳定性

CHEMISTRY-A EUROPEAN JOURNAL

IF3.7

2023-05-024

PRE

gr Predictor: A Deep Learning Model for Predicting the Hydration Structures around Proteins

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2022-09-074

OA

Comprehensive 3D-RISM analysis of the hydration of small molecule binding sites in ligand-free protein structures

JOURNAL OF COMPUTATIONAL CHEMISTRY

IF4.8

2020-08-197

OAAI

Growth of Cuprous Oxide Particles in Liquid-Phase Synthesis Investigated by X-ray Laser Diffraction

IF9.1

2018-07-1012

PREAI

An Accurate Computation of a Physical Quantity of a Protein with a Markov State Model Constructed using a Manifold-Learning Technique

BIOPHYSICAL JOURNAL

IF3.1

2018-02-010

OAAI

Reconstruction of Three-Dimensional Structures of a Protein with Software ENMA and EMC Algorithm: A Simulation for XFEL-CXDI Experiment

BIOPHYSICAL JOURNAL

IF3.1

2017-02-010

PREAI

Computational Methods for Configurational Entropy Using Internal and Cartesian Coordinates

使用内部和笛卡尔坐标计算配置熵的方法

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2016-12-0247

OAAI

An Accurate and Efficient, Computational Method for the Hydration Free Energy of Large and Complex Molecules

BIOPHYSICAL JOURNAL

IF3.1

2016-02-010

OAAI

An accurate and efficient computation method of the hydration free energy of a large, complex molecule

JOURNAL OF CHEMICAL PHYSICS

IF3.1

2015-05-077

PREAI

Classification Protocol of Projection Images by Manifold: Toward Analysis of Dynamics of Particles with Coherent X-Ray Diffraction Imaging

BIOPHYSICAL JOURNAL

IF3.1

2014-01-010

OAAI

Molecular Dynamics Simulations of Yeast F1-ATPase Before and after 16-Degree Rotation of the Gamma Subunit

BIOPHYSICAL JOURNAL

IF3.1

2013-01-010

OAAI

Structural characteristics of yeast F1-ATPase before and after 16-degree rotation of the γ subunit: Theoretical analysis focused on the water-entropy effect

JOURNAL OF CHEMICAL PHYSICS

IF3.1

2012-07-1719

PREAI

A Novel Rotation Mechanism of F1-ATPase Based on the Water-Entropy Effect

BIOPHYSICAL JOURNAL

IF3.1

2012-01-010

OAAI

Free-energy function for discriminating the native fold of a protein from misfolded decoys

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2011-05-0925

OAAI