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Pablo R. Arantes

John Curtin School of Medical Research

16H指数
72论文数
853被引数
收录论文 23
发表时间
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eRMSF: A Python Package for Ensemble-Based RMSF Analysis of Biomolecular SystemseRMSF：一个用于基于集合的分子系统RMSF分析的Python软件包
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-11-01
err0
PREAI
errArantes, Pablo Ricardo; Ligabue-Braun, Rodrigo; Pedebos, Conrado
err分享
err收藏
CRISPR-Cas12a REC2-Nuc interactions drive target-strand cleavage and constrain trans cleavageCRISPR-Cas12a REC2-Nuc相互作用驱动目标链切割并限制反式切割
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-10-14
err0
errOAAI
errNewman, Anthony; Saha, Aakash; Starrs, Lora; Arantes, Pablo R.; Palermo, Giulia; Burgio, Gaetan
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err收藏
ParametrizANI: Fast and Accessible Dihedral Parametrization for Small MoleculesParametrizANI：适用于小分子的快速且易获取的二面角参数化方法
errJournal of Chemical Information and Modeling
IF5.3
err2025-10-09
err0
PREAI
errPablo R. Arantes; Souvik Sinha; Giulia Palermo
err分享
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Unveiling Cas8 dynamics and regulation within a transposon- encoded Cascade-TniQ complex揭示Cas8在转座子编码的Cascade-TniQ复合物中的动态和调控
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2025-04-02
err0
errOAAI
errPatel, Amun C.; Sinha, Souvik; Arantes, Pablo R.
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Dimerization of the deaminase domain and locking interactions with Cas9 boost base editing efficiency in ABE8e脱氨酶结构域的二聚化和与Cas9的锁定相互作用提高了ABE8e中的碱基编辑效率
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-11-21
err0
errOAAI
errArantes, Pablo R.; Chen, Xiaoyu; Sinha, Souvik; Saha, Aakash; Patel, Amun C.; Sample, Matthew; Nierzwicki, Lukasz; Lapinaite, Audrone; Palermo, Giulia
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Substrate-independent activation pathways of the CRISPR-Cas9 HNH nuclease
errBIOPHYSICAL JOURNAL
IF3.1
err2023-12-01
err0
PREAI
errWang, Jimin; Maschietto, Federica; Qiu, Tianyin; Arantes, Pablo R.; Skeens, Erin; Palermo, Giulia; Lisi, George P.; Batista, Victor S.
err分享
err收藏
Multidimensional Signals and Analytic Flexibility: Estimating Degrees of Freedom in Human-Speech Analyses
errADVANCES IN METHODS AND PRACTICES IN PSYCHOLOGICAL SCIENCE
IF13.4
err2023-07-20
err4
errOAAI
errCoretta, Stefano; Casillas, Joseph V.; Roessig, Simon; Franke, Michael; Ahn, Byron; Al-Hoorie, Ali H.; Al-Tamimi, Jalal; Alotaibi, Najd E.; AlShakhori, Mohammed K.; Altmiller, Ruth M.; Arantes, Pablo; Athanasopoulou, Angeliki; Baese-Berk, Melissa M.; Bailey, George; Sangma, Cheman Baira A.; Beier, Eleonora J.; Benavides, Gabriela M.; Benker, Nicole; BensonMeyer, Emelia P.; Benway, Nina R.; Berry, Grant M.; Bing, Liwen; Bjorndahl, Christina; Bolyanatz, Mariska; Braver, Aaron; Brown, Violet A.; Brown, Alicia M.; Brugos, Alejna; Buchanan, Erin M.; Butlin, Tanna; Buxo-Lugo, Andres; Caillol, Coline; Cangemi, Francesco; Carignan, Christopher; Carraturo, Sita; Caudrelier, Tiphaine; Chodroff, Eleanor; Cohn, Michelle; Cronenberg, Johanna; Crouzet, Olivier; Dagar, Erica L.; Dawson, Charlotte; Diantoro, Carissa A.; Dokovova, Marie; Drake, Shiloh; Du, Fengting; Dubuis, Margaux; Dueme, Florent; Durward, Matthew; Egurtzegi, Ander; Elsherif, Mahmoud M.; Esser, Janina; Ferragne, Emmanuel; Ferreira, Fernanda; Fink, Lauren K.; Finley, Sara; Foster, Kurtis; Foulkes, Paul; Franzke, Rosa; Frazer-McKee, Gabriel; Fromont, Robert; Garcia, Christina; Geller, Jason; Grasso, Camille L.; Greca, Pia; Grice, Martine; Grose-Hodge, Magdalena S.; Gully, Amelia J.; Halfacre, Caitlin; Hauser, Ivy; Hay, Jen; Haywood, Robert; Hellmuth, Sam; Hilger, Allison I.; Holliday, Nicole; Hoogland, Damar; Huang, Yaqian; Hughes, Vincent; Icardo Isasa, Ane; Ilchovska, Zlatomira G.; Jeon, Hae-Sung; Jones, Jacq; Junges, Magat N.; Kaefer, Stephanie; Kaland, Constantijn; Kelley, Matthew C.; Kelly, Niamh E.; Kettig, Thomas; Khattab, Ghada; Koolen, Ruud; Krahmer, Emiel; Krajewska, Dorota; Krug, Andreas; Kumar, Abhilasha A.; Lander, Anna; Lentz, Tomas O.; Li, Wanyin; Li, Yanyu; Lialiou, Maria; Lima, Ronaldo M., Jr.; Lo, Justin J. H.; Lopez Otero, Julio Cesar; Mackay, Bradley; MacLeod, Bethany; Mallard, Mel; McConnellogue, Carol-Ann Mary; Moroz, George; Murali, Mridhula; Nalborczyk, Ladislas; Nenadic, Filip; Nieder, Jessica; Nikolic, Dusan; Nogueira, Francisco G. S.; Offerman, Heather M.; Passoni, Elisa; Pelissier, Maud; Perry, Scott J.; Pfiffner, Alexandra M.; Proctor, Michael; Rhodes, Ryan; Rodriguez, Nicole; Roepke, Elizabeth; Roeer, Jan P.; Sbacco, Lucia; Scarborough, Rebecca; Schaeffler, Felix; Schleef, Erik; Schmitz, Dominic; Shiryaev, Alexander; Soskuthy, Marton; Spaniol, Malin; Stanley, Joseph A.; Strickler, Alyssa; Tavano, Alessandro; Tomaschek, Fabian; Tucker, Benjamin V.; Turnbull, Rory; Ugwuanyi, Kingsley O.; Urrestarazu-Porta, Inigo; van de Vijver, Ruben; Van Engen, Kristin J.; van Miltenburg, Emiel; Wang, Bruce Xiao; Warner, Natasha; Wehrle, Simon; Westerbeek, Hans; Wiener, Seth; Winters, Stephen; Wong, Sidney G. -J.; Wood, Anna; Wottawa, Jane; Xu, Chenzi; Zarate-Sandez, German; Zellou, Georgia; Zhang, Cong; Zhu, Jian; Roettger, Timo B.
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Machines on Genes through the Computational Microscope
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2023-03-22
err9
errOAAI
errSinha, Souvik; Pindi, Chinmai; Ahsan, Mohd; Arantes, Pablo R.; Palermo, Giulia
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err收藏
GPU-Enhanced DFTB Metadynamics for Efficiently Predicting Free Energies of Biochemical Systems
errMOLECULES
IF4.6
err2023-01-28
err11
errOAAI
errKumar, Anshuman; Arantes, Pablo R. R.; Saha, Aakash; Palermo, Giulia; Wong, Bryan M. M.
err分享
err收藏
Twisting and swiveling domain motions in Cas9 to recognize target DNA duplexes, make double-strand breaks, and release cleaved duplexes
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2023-01-09
err6
errOAAI
errWang, Jimin; Arantes, Pablo R.; Ahsan, Mohd; Sinha, Souvik; Kyro, Gregory W.; Maschietto, Federica; Allen, Brandon; Skeens, Erin; Lisi, George P.; Batista, Victor S.; Palermo, Giulia
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Dynamics and mechanisms of CRISPR-Cas9 through the lens of computational methods
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2022-08-01
err18
errOAAI
errSaha, Aakash; Arantes, Pablo R.; Palermo, Giulia
err分享
err收藏
Nek1-inhibitor and temozolomide-loaded microfibers as a co-therapy strategy for glioblastoma treatment
errINTERNATIONAL JOURNAL OF PHARMACEUTICS
IF5.2
err2022-04-01
err7
errOAAI
errReinhardt, Luiza Steffens; Moras, Ana Moira; Henn, Jeferson Gustavo; Arantes, Pablo Ricardo; Ferro, Matheus Bernardes; Braganhol, Elizandra; de Souza, Priscila Oliveira; Merib, Josias de Oliveira; Borges, Gabriela Ramos; Dalanhol, Carolina Silveira; Holanda de Barros Dias, Mabilly Cox; Nugent, Michael; Moura, Dinara Jaqueline
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Structural and dynamic insights into the HNH nuclease of divergent Cas9 species
errJOURNAL OF STRUCTURAL BIOLOGY
IF5.1
err2022-03-01
err10
errOAAI
errBelato, Helen B.; D'Ordine, Alexandra M.; Nierzwicki, Lukasz; Arantes, Pablo R.; Jogl, Gerwald; Palermo, Giulia; Lisi, George P.
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Making it Rain: Cloud-Based Molecular Simulations for Everyone
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2021-10-01
err57
PREAI
errArantes, Pablo R.; Poleto, Marcelo D.; Pedebos, Conrado; Ligabue-Braun, Rodrigo
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err收藏
Role of Electrostatic Hotspots in the Selectivity of Complement Control Proteins Toward Human and Bovine Complement Inhibition
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2021-03-16
err1
errOAAI
errNarkhede, Yogesh B.; Gautam, Avneesh K.; Hsu, Rohaine V.; Rodriguez, Wilson; Zewde, Nehemiah T.; Harrison, Reed E. S.; Arantes, Pablo R.; Gaieb, Zied; Gorham, Ronald D.; Kieslich, Chris; Morikis, Dimitrios; Sahu, Arvind; Palermo, Giulia
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Molecular Dynamics Reveals a DNA-Induced Dynamic Switch Triggering Activation of CRISPR-Cas12a
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2020-10-27
err38
errOAAI
errSaha, Aakash; Arantes, Pablo R.; Hsu, Rohaine, V; Narkhede, Yogesh B.; Jinek, Martin; Palermo, Giulia
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Establishing the allosteric mechanism in CRISPR-Cas9
errWILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE
IF27
err2020-10-26
err40
errOAAI
errNierzwicki, Lukasz; Arantes, Pablo Ricardo; Saha, Aakash; Palermo, Giulia
err分享
err收藏
Fighting COVID-19 Using Molecular Dynamics Simulations
errACS CENTRAL SCIENCE
IF10.4
err2020-10-12
err43
errOAAI
errArantes, Pablo R.; Saha, Aakash; Palermo, Giulia
err分享
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Electrospun PVA-Dacarbazine nanofibers as a novel nano brain-implant for treatment of glioblastoma: in silico and in vitro characterization
errEUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES
IF4.7
err2020-02-01
err37
PREAI
errSteffens, Luiza; Moras, Ana Moira; Arantes, Pablo Ricardo; Masterson, Kevin; Cao, Zhi; Nugent, Michael; Moura, Dinara Jaqueline
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The Lazy Life of Lipid-Linked Oligosaccharides in All Life Domains
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2019-11-26
err5
errOAAI
errArantes, Pablo R.; Pedebos, Conrado; Poleto, Marcelo D.; Pol-Fachin, Laercio; Verli, Hugo
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研究方向

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