Karel Šimek - Publications, H-index & Citations

Karel Šimek

czech academy of sciences

56H指数

169论文数

8.7K被引数

收录论文 56

发表时间

High-Temporal Resolution of Microbial Food Web Dynamics and Structure During Phytoplankton Blooms in the Baltic Sea 波罗的海浮游植物暴发期间微生物食物网动态与结构的瞬时分辨率

Environmental Microbiology

IF4

2025-10-30

PREAI

Sohrab Khan; Klaudia Wdówka; Joanna Calkiewicz; Krzysztof Rychert; Lidia Nawrocka; Anetta Ameryk; Tanja Shabarova; Indranil Mukherjee; Karel Šimek; Aneta Jakubowska; Mariusz Zalewski; Kasia Piwosz

New lineage of scuticociliates dominates the ciliate community and bacterivory in hypolimnetic waters of a freshwater reservoir 一个新的毛滴虫类原生动物谱系主导了淡水水库缺氧层水体中的纤毛虫群落及细菌捕食作用。

The ISME Journal

IF0

2025-07-13

OAAI

Karel Šimek; Usman Asghar; Bettina Sonntag; Vojtěch Kasalický; Tanja Shabarova; Indranil Mukherjee

Cultivation, genomics, and giant viruses of a ubiquitous and heterotrophic freshwater cryptomonad 培养、基因组学及巨型病毒研究：一种广泛分布的异养型淡水隐甲藻

ISME JOURNAL

IF10

2025-01-01

OAAI

Mukherjee, Indranil; Bulzu, Paul-Adrian; Boukheloua, Roudaina; Asghar, Usman; Park, Hongjae; Vieira, Helena Henriques; Chiriac, Maria-Cecilia; Kasalicky, Vojtech; Znachor, Petr; Rychtecky, Pavel; Simek, Karel; Salcher, Michaela M.; Haber, Markus; Ghai, Rohit

Global freshwater distribution of Telonemia protists Telonemia protists的全球淡水分布

ISME JOURNAL

IF10

2024-09-20

OAAI

Boukheloua, Roudaina; Mukherjee, Indranil; Park, Hongjae; Simek, Karel; Kasalicky, Vojtech; Ngochera, Maxon; Grossart, Hans-Peter; Picazo-Mozo, Antonio; Camacho, Antonio; Cabello-Yeves, Pedro J.; Rodriguez-Valera, Francisco; Callieri, Cristiana; Andrei, Adrian-Stefan; Pernthaler, Jakob; Posch, Thomas; Alfreider, Albin; Sommaruga, Ruben; Hahn, Martin W.; Sonntag, Bettina; Lopez-Garcia, Purificacion; Moreira, David; Jardillier, Ludwig; Lepere, Cecile; Biderre-Petit, Corinne; Bednarska, Anna; Slusarczyk, Miroslaw; Toth, Viktor R.; Banciu, Horia L.; Kormas, Konstantinos; Orlic, Sandi; Santic, Danijela; Muyzer, Gerard; Herlemann, Daniel P. R.; Tammert, Helen; Bertilsson, Stefan; Langenheder, Silke; Zechmeister, Thomas; Salmaso, Nico; Storelli, Nicola; Capelli, Camilla; Lepori, Fabio; Lanta, Vojtech; Vieira, Helena Henriques; Kostanjsek, Fran; Kabelacova, Katerina; Chiriac, Maria-Cecilia; Haber, Markus; Shabarova, Tanja; Fernandes, Clafy; Rychtecky, Pavel; Znachor, Petr; Szoke-Nagy, Tiberiu; Layoun, Paul; Wong, Hon Lun; Kavagutti, Vinicius Silva; Bulzu, Paul-Adrian; Salcher, Michaela M.; Piwosz, Kasia; Ghai, Rohit

Integrating depth-dependent protist dynamics and microbial interactions in spring succession of a freshwater reservoir

ENVIRONMENTAL MICROBIOME

IF5.4

2024-05-08

OAAI

Mukherjee, Indranil; Grujcic, Vesna; Salcher, Michaela M.; Znachor, Petr; Sed'a, Jaromir; Devetter, Miloslav; Rychtecky, Pavel; Simek, Karel; Shabarova, Tanja

In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model

MICROBIOME

IF12.7

2023-05-20

OAAI

Park, Hongjae; Shabarova, Tanja; Salcher, Michaela M.; Kosova, Lenka; Rychtecky, Pavel; Mukherjee, Indranil; Simek, Karel; Porcal, Petr; Seda, Jaromir; Znachor, Petr; Kasalicky, Vojtech

High-resolution metagenomic reconstruction of the freshwater spring bloom

MICROBIOME

IF12.7

2023-01-26

OAAI

Kavagutti, Vinicius S. S.; Bulzu, Paul-Adrian; Chiriac, Cecilia M. M.; Salcher, Michaela M. M.; Mukherjee, Indranil; Shabarova, Tanja; Grujcic, Vesna; Mehrshad, Maliheh; Kasalicky, Vojtech; Andrei, Adrian-Stefan; Jezberova, Jitka; Seda, Jaromir; Rychtecky, Pavel; Znachor, Petr; Simek, Karel; Ghai, Rohit

Cryptic and ubiquitous aplastidic cryptophytes are key freshwater flagellated bacterivores

ISME JOURNAL

IF10

2022-10-07

OAAI

Simek, Karel; Mukherjee, Indranil; Szoke-Nagy, Tiberiu; Haber, Markus; Salcher, Michaela M.; Ghai, Rohit

Trophic flexibility of marine diplonemids-switching from osmotrophy to bacterivory

ISME JOURNAL

IF10

2022-01-18

OAAI

Prokopchuk, Galina; Korytar, Tomas; Juricova, Valeria; Majstorovic, Jovana; Horak, Ales; Simek, Karel; Lukes, Julius

CARD-FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes

ENVIRONMENTAL MICROBIOLOGY

IF4

2021-12-21

OAAI

Simek, Karel; Mukherjee, Indranil; Nedoma, Jiri; Paula, Caio Cesar Pires; Jezberova, Jitka; Sirova, Dagmara; Vrba, Jaroslav

CARD-FISH in the Sequencing Era: Opening a New Universe of Protistan Ecology

FRONTIERS IN MICROBIOLOGY

IF4.5

2021-03-04

OAAI

Piwosz, Kasia; Mukherjee, Indranil; Salcher, Michaela M.; Grujcic, Vesna; Simek, Karel

Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring

WATER RESEARCH

IF12.4

2021-03-01

127

OAAI

Sagova-Mareckova, M.; Boenigk, J.; Bouchez, A.; Cermakova, K.; Chonova, T.; Cordier, T.; Eisendle, U.; Elersek, T.; Fazi, S.; Fleituch, T.; Fruhe, L.; Gajdosova, M.; Graupner, N.; Haegerbaeumer, A.; Kelly, A. -M.; Kopecky, J.; Leese, F.; Noges, P.; Orlic, S.; Panksep, K.; Pawlowski, J.; Petrusek, A.; Piggott, J. J.; Rusch, J. C. S.; Salis, R.; Schenk, J.; Simek, K.; Stovicek, A.; Strand, D. A.; Vasquez, M. I.; Vralstad, T.; Zlatkovic, S.; Zupancic, M.; Stoeck, T.

A freshwater radiation of diplonemids

ENVIRONMENTAL MICROBIOLOGY

IF4

2020-09-24

OAAI

Mukherjee, Indranil; Salcher, Michaela M.; Andrei, Adrian-Stefan; Kavagutti, Vinicius Silva; Shabarova, Tanja; Grujcic, Vesna; Haber, Markus; Layoun, Paul; Hodoki, Yoshikuni; Nakano, Shin-ichi; Simek, Karel; Ghai, Rohit

Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes 捕食性Cercozoa，Katablepharidacea和纤毛虫在淡水微生物食物网中的级联效应

FEMS MICROBIOLOGY ECOLOGY

IF3.2

2020-06-18

OAAI

Simek, Karel; Grujcic, Vesna; Mukherjee, Indranil; Kasalicky, Vojtech; Nedoma, Jiri; Posch, Thomas; Mehrshad, Maliheh; Salcher, Michaela M.

Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations 细菌和真核生物小亚基扩增子数据不能提供微生物群落的定量图像，但在生态解释的背景下它们是可靠的

MSPHERE

IF3.1

2020-04-29

OAAI

Piwosz, Kasia; Shabarova, Tanja; Pernthaler, Jakob; Posch, Thomas; Simek, Karel; Porcal, Petr; Salcher, Michaela M.

Microbial food webs in hypertrophic fishponds: Omnivorous ciliate taxa are major protistan bacterivores

LIMNOLOGY AND OCEANOGRAPHY

IF3.7

2019-07-29

OAAI

Simek, Karel; Grujcic, Vesna; Nedoma, Jiri; Jezberova, Jitka; Sorf, Michal; Matousu, Anna; Pechar, Libor; Posch, Thomas; Bruni, Estelle P.; Vrba, Jaroslav

Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant (vol 6, 225, 2018)

MICROBIOME

IF12.7

2019-01-05

OAAI

Sirova, Dagmara; Barta, Jiri; Simek, Karel; Posch, Thomas; Pech, Jiri; Stone, James; Borovec, Jakub; Adamec, Lubomir; Vrba, Jaroslav

Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant

MICROBIOME

IF12.7

2018-12-17

OAAI

Sirova, Dagmara; Barta, Jiri; Simek, Karel; Posch, Thomas; Pech, Jiri; Stone, James; Borovec, Jakub; Adamec, Lubomir; Vrba, Jaroslav

Hidden in plain sight-highly abundant and diverse planktonic freshwater Chloroflexi

MICROBIOME

IF12.7

2018-10-02

OAAI

Mehrshad, Maliheh; Salcher, Michaela M.; Okazaki, Yusuke; Nakano, Shin-ichi; Simek, Karel; Andrei, Adrian-Stefan; Ghai, Rohit

Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS)

ISME JOURNAL

IF10

2018-07-06

OAAI

Piwosz, Kasia; Shabarova, Tanja; Tomasch, Jurgen; Simek, Karel; Kopejtka, Karel; Kahl, Silke; Pieper, Dietmar H.; Koblizek, Michal

研究方向