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J

James E. Johnson

University of Minnesota

27H指数
226论文数
3.2K被引数
收录论文 32
发表时间
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Comparative performance of scribe and database search engines in metaproteomic profiling of a ground-truth microbiome dataset基于真实微生物组数据集的元蛋白质组分析中，scribe和database搜索引擎的对比性能
errJournal of Proteomics
IF2.8
err2025-10-21
err0
PREAI
errAndrew T. Rajczewski; Subina Mehta; Reid Wagner; Wassim Gabriel; James Johnson; Katherine Do; Simina Vintila; Mathias Wilhelm; Manuel Kleiner; Brian C. Searle; Timothy J. Griffin; Pratik D. Jagtap
err分享
err收藏
Techniques for Validating CRISPR Changes Using RNA-Sequencing Data利用RNA测序数据验证CRISPR基因编辑变化的技术
errGENES
IF2.8
err2025-03-24
err0
errOAAI
errRathe, Susan K.; Marko, Tracy A.; Edwards, Elizabeth N.; Ridder, Paige Hazelton; Varshney, Jyotika; Williams, Kyle B.; Johnson, James E.; Moriarity, Branden S.
err分享
err收藏
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease用于研究应用于囊性纤维化疾病的支气管肺泡灌洗样品中宿主微生物动力学的集成元蛋白质组学工作流程
errMSYSTEMS
IF4.6
err2024-07-23
err2
errOAAI
errKruk, Monica E.; Mehta, Subina; Murray, Kevin; Higgins, LeeAnn; Do, Katherine; Johnson, James E.; Wagner, Reid; Wendt, Chris H.; O'Connor, John B.; Harris, J. Kirk; Laguna, Theresa A.; Jagtap, Pratik D.; Griffin, Timothy J.
err分享
err收藏
A novel clinical metaproteomics workflow enables bioinformatic analysis of host-microbe dynamics in disease一种新的临床元蛋白质组学工作流程可以对疾病中的宿主微生物动力学进行生物信息学分析
errMSPHERE
IF3.1
err2024-06-25
err2
errOAAI
errDo, Katherine; Mehta, Subina; Wagner, Reid; Bhuming, Dechen; Rajczewski, Andrew T.; Skubitz, Amy P. N.; Johnson, James E.; Griffin, Timothy J.; Jagtap, Pratik D.
err分享
err收藏
A Galaxy of informatics resources for MS-based proteomics基于MS的蛋白质组学的信息学资源星系
errEXPERT REVIEW OF PROTEOMICS
IF2.8
err2023-10-09
err7
PREAI
errMehta, Subina; Bernt, Matthias; Chambers, Matthew; Fahrner, Matthias; Foell, Melanie Christine; Gruening, Bjoern; Horro, Carlos; Johnson, James E.; Loux, Valentin; Rajczewski, Andrew T.; Schilling, Oliver; Vandenbrouck, Yves; Gustafsson, Ove Johan Ragnar; Thang, W. C. Mike; Hyde, Cameron; Price, Gareth; Jagtap, Pratik D.; Griffin, Timothy J.
err分享
err收藏
Metaproteomic Analysis of Nasopharyngeal Swab Samples to Identify Microbial Peptides in COVID-19 Patients新型冠状病毒肺炎患者鼻咽拭子样品的蛋白质组学分析以鉴定微生物肽
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2023-07-14
err7
PREAI
errBihani, Surbhi; Gupta, Aryan; Mehta, Subina; Rajczewski, Andrew T.; Johnson, James; Borishetty, Dhanush; Griffin, Timothy J.; Srivastava, Sanjeeva; Jagtap, Pratik D.
err分享
err收藏
Integrative meta-omics in Galaxy and beyond银河系及其他地区的整合元组学
errENVIRONMENTAL MICROBIOME
IF5.4
err2023-07-07
err5
errOAAI
errSchiml, Valerie C.; Delogu, Francesco; Kumar, Praveen; Kunath, Benoit; Batut, Berenice; Mehta, Subina; Johnson, James E.; Gruening, Bjoern; Pope, Phillip B.; Jagtap, Pratik D.; Griffin, Timothy J.; Arntzen, Magnus O.
err分享
err收藏
Catching the Wave: Detecting Strain-Specific SARS-CoV-2 Peptides in Clinical Samples Collected during Infection Waves from Diverse Geographical Locations捕捉波: 在来自不同地理位置的感染波期间收集的临床样本中检测菌株特异性SARS-CoV-2肽
errVIRUSES-BASEL
IF3.5
err2022-10-07
err1
errOAAI
errMehta, Subina; Carvalho, Valdemir M.; Rajczewski, Andrew T.; Pible, Olivier; Gruening, Bjoern A.; Johnson, James E.; Wagner, Reid; Armengaud, Jean; Griffin, Timothy J.; Jagtap, Pratik D.
err分享
err收藏
MaxQuant and MSstats in Galaxy Enable Reproducible Cloud-Based Analysis of Quantitative Proteomics Experiments for EveryoneGalaxy中的MaxQuant和MSstats为每个人提供了可重复的基于云的定量蛋白质组学实验分析
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2022-05-03
err11
errOAAI
errPinter, Niko; Glaetzer, Damian; Fahrner, Matthias; Frohlich, Klemens; Johnson, James; Gruening, Bjoern Andreas; Warscheid, Bettina; Drepper, Friedel; Schilling, Oliver; Foell, Melanie Christine
err分享
err收藏
Updates on metaQuantome Software for Quantitative Metaproteomics用于定量元蛋白质组学的元量子组软件的更新
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2021-03-08
err3
PREAI
errMehta, Subina; Kumar, Praveen; Crane, Marie; Johnson, James E.; Sajulga, Ray; Dinh Duy An Nguyen; McGowan, Thomas; Arntzen, Magnus O.; Griffin, Timothy J.; Jagtap, Pratik D.
err分享
err收藏
Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting MicroorganismsSARS-CoV-2-Infected患者样本的元蛋白质组学分析揭示了潜在的共感染微生物的存在
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2021-01-04
err17
errOAAI
errThuy-Boun, Peter S.; Mehta, Subina; Gruening, Bjoern; McGowan, Thomas; Nguyen, An; Rajczewski, Andrew T.; Johnson, James E.; Griffin, Timothy J.; Wolan, Dennis W.; Jagtap, Pratik D.
err分享
err收藏
Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform基于前体强度的无标记定量软件工具，用于Galaxy平台内的蛋白质组学和多组学分析
errPROTEOMES
IF3.6
err2020-07-08
err11
errOAAI
errMehta, Subina; Easterly, Caleb W.; Sajulga, Ray; Millikin, Robert J.; Argentini, Andrea; Eguinoa, Ignacio; Martens, Lennart; Shortreed, Michael R.; Smith, Lloyd M.; McGowan, Thomas; Kumar, Praveen; Johnson, James E.; Griffin, Timothy J.; Jagtap, Pratik D.
err分享
err收藏
A Sectioning and Database Enrichment Approach for Improved Peptide Spectrum Matching in Large, Genome-Guided Protein Sequence Databases在大型基因组引导的蛋白质序列数据库中改进肽谱匹配的切片和数据库富集方法
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2020-05-12
err23
errOAAI
errKumar, Praveen; Johnson, James E.; Easterly, Caleb; Mehta, Subina; Sajulga, Ray; Nunn, Brook; Jagtap, Pratik D.; Griffin, Timothy J.
err分享
err收藏
Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration多组学可视化平台: 用于多组学数据可视化和探索的可扩展Galaxy插件
errGIGASCIENCE
IF3.9
err2020-03-28
err12
errOAAI
errMcGowan, Thomas; Johnson, James E.; Kumar, Praveen; Sajulga, Ray; Mehta, Subina; Jagtap, Pratik D.; Griffin, Timothy J.
err分享
err收藏
Challenges in Peptide-Spectrum Matching: A Robust and Reproducible Statistical Framework for Removing Low-Accuracy, High-Scoring Hits肽谱匹配的挑战: 一个强大且可重复的统计框架，用于消除低精度，高分命中
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2019-12-03
err10
errOAAI
errHubler, Shane L.; Kumar, Praveen; Mehta, Subina; Easterly, Caleb; Johnson, James E.; Jagtap, Pratik D.; Griffin, Timothy J.
err分享
err收藏
FluChip-8G Insight: HA and NA subtyping of potentially pandemic influenza A viruses in a single assay
errINFLUENZA AND OTHER RESPIRATORY VIRUSES
IF4.2
err2019-10-13
err2
errOAAI
errToth, Evan; Dawson, Erica D.; Taylor, Amber W.; Stoughton, Robert S.; Blair, Rebecca H., Jr.; Johnson, James E.; Slinskey, Amelia; Fessler, Ryan; Smith, Catherine B.; Talbot, Sarah; Rowlen, Kathy
err分享
err收藏
SPIROMETRY IN MECHANICALLY VENTILATED WESTERN LOWLAND GORILLAS (GORILLA GORILLA GORILLA)机械通风的西部低地大猩猩 (大猩猩大猩猩) 的肺活量测定
errCHEST
IF8.6
err2019-10-01
err0
PREAI
errPurdon, Stefanie; Johnson, James; Flacke, Gabriella; Chinnadurai, Sathya; Bezjian, Marisa; Myers, Gwen; Holt, Gregory
err分享
err收藏
Clinical validation of the FluChip-8G Influenza A plus B Assay for influenza type and subtype identification
errJOURNAL OF CLINICAL VIROLOGY
IF3.4
err2019-09-01
err4
errOAAI
errBlair, Rebecca H.; Dawson, Erica D.; Taylor, Amber W.; Johnson, James E., Jr.; Slinskey, Amelia H.; O'Neil, Kelly; Smolak, Andrew W.; Toth, Evan; Liikanen, Kyle; Stoughton, Robert S.; Smith, Catherine B.; Talbot, Sarah; Rowlen, Kathy L.
err分享
err收藏
metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes
errMOLECULAR & CELLULAR PROTEOMICS
IF5.5
err2019-08-01
err29
errOAAI
errEasterly, Caleb W.; Sajulga, Ray; Mehta, Subina; Johnson, James; Kumar, Praveen; Hubler, Shane; Mesuere, Bart; Rudney, Joel; Griffin, Timothy J.; Jagtap, Pratik D.
err分享
err收藏
Identification of candidate neoantigens produced by fusion transcripts in human osteosarcomas
errSCIENTIFIC REPORTS
IF3.9
err2019-01-23
err36
errOAAI
errRathe, Susan K.; Popescu, Flavia E.; Johnson, James E.; Watson, Adrienne L.; Marko, Tracy A.; Moriarity, Branden S.; Ohlfest, John R.; Largaespada, David A.
err分享
err收藏

研究方向

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合作期刊
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