James J. Collins - Publications, H-index & Citations

James J. Collins

Massachusetts Institute of Technology

54H指数

293论文数

1.0W被引数

收录论文 82

发表时间

A programmable microbial assembly line for plastic upcycling 用于塑料回收的可编程微生物装配线

Nature Sustainability

IF27.1

2026-03-02

PREAI

Yuanchao Qian; James J. Collins; Ting Lu

FATE-MAP predicts teratogenicity and human gastrulation failure modes by integrating deep learning and mechanistic modeling FATE-MAP通过整合深度学习和机制建模来预测致畸性和人类原肠形成失败模式

Nature Communications

IF15.7

2026-02-19

OAAI

Joseph Rufo; Chongxu Qiu; Dasol Han; Naomi Baxter; Gabrielle Daley; Jasmine Dhillon; Felix Wong; James J. Collins; Maxwell Z. Wilson

Digital CRISPR-based diagnostics for quantification of Candida auris and resistance mutations 基于数字CRISPR的诊断方法用于定量检测耳念珠菌及其耐药突变

Nature Biomedical Engineering

IF26.6

2026-01-14

PREAI

Justin C. Rolando; Anton Thieme; Nicole E. Weckman; Nayoung Kim; Helena de Puig; Xiao Tan; Emily Cotnoir; Vishnu Chaturvedi; James J. Collins; David R. Walt

Unusual inheritance of a functional cki homolog in the human pathogen Schistosoma mansoni 日本血吸虫中功能性cki同源基因的异常遗传

Science Advances

IF12.5

2025-12-10

OAAI

George R. Wendt; James J. Collins

A generative deep learning approach to de novo antibiotic design 一种用于全新抗生素设计的生成式深度学习方法

Cell

IF42.5

2025-08-14

PREAI

Aarti Krishnan; Melis N. Anahtar; Jacqueline A. Valeri; Wengong Jin; Nina M. Donghia; Leif Sieben; Andreas Luttens; Yu Zhang; Seyed Majed Modaresi; Andrew Hennes; Jenna Fromer; Parijat Bandyopadhyay; Jonathan C. Chen; Danyal Rehman; Ronak Desai; Paige Edwards; Ryan S. Lach; Marie-Stéphanie Aschtgen; Margaux Gaborieau; Massimiliano Gaetani; Samantha G. Palace; Satotaka Omori; Lutete Khonde; Yurii S. Moroz; Bruce Blough; Chunyang Jin; Edmund Loh; Yonatan H. Grad; Amir Ata Saei; Connor W. Coley; Felix Wong; James J. Collins

Characterization of severe COL6-related dystrophy due to the recurrent variant COL6A1 c.930+189C>T COL6相关严重型肌营养不良的表征：由复发性变异COL6A1 c.930+189C>T引起

Brain

IF11.7

2025-04-03

OAAI

A Reghan Foley; Véronique Bolduc; Fady Guirguis; Sandra Donkervoort; Ying Hu; Rotem Orbach; Riley M McCarty; Apurva Sarathy; Gina Norato; Beryl B Cummings; Monkol Lek; Anna Sarkozy; Russell J Butterfield; Janbernd Kirschner; Andrés Nascimento; Daniel Natera-de Benito; Susana Quijano-Roy; Tanya Stojkovic; Luciano Merlini; Giacomo Comi; Monique Ryan; Denise McDonald; Pinki Munot; Grace Yoon; Edward Leung; Erika Finanger; Meganne E Leach; James Collins; Cuixia Tian; Payam Mohassel; Sarah B Neuhaus; Dimah Saade; Benjamin T Cocanougher; Mary-Lynn Chu; Mena Scavina; Carla Grosmann; Randal Richardson; Brian D Kossak; Sidney M Gospe; Vikram Bhise; Gita Taurina; Baiba Lace; Monica Troncoso; Mordechai Shohat; Adel Shalata; Sophelia H S Chan; Manu Jokela; Johanna Palmio; Göknur Haliloğlu; Cristina Jou; Corine Gartioux; Herimela Solomon-Degefa; Carolin D Freiburg; Alvise Schiavinato; Haiyan Zhou; Sara Aguti; Yoram Nevo; Ichizo Nishino; Cecilia Jimenez-Mallebrera; Shireen R Lamandé; Valérie Allamand; Francesca Gualandi; Alessandra Ferlini; Daniel G MacArthur; Steve D Wilton; Raimund Wagener; Enrico Bertini; Francesco Muntoni; Carsten G Bönnemann

Machine learning for synthetic gene circuit engineering

CURRENT OPINION IN BIOTECHNOLOGY

IF7

2025-04-01

PREAI

Palacios, Sebastian; Collins, James J.; Del Vecchio, Domitilla

A Krüppel-like factor establishes cellular heterogeneity during schistosome tegumental maintenance

PLOS PATHOGENS

IF4.9

2025-03-01

OAAI

Zhao, Lu; Wendt, George R.; Collins III, James. J.

A niche- derived nonribosomal peptide triggers planarian sexual development

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2024-06-18

OAAI

Issigonis, Melanie; Browder, Katherine L.; Chen, Rui; Collins III, James J.; Newmark, Phillip A.

A high-throughput synthetic biology approach for studying combinatorial chromatin-based transcriptional regulation

MOLECULAR CELL

IF16.6

2024-06-01

PREAI

Alcantar, Miguel A.; English, Max A.; Valeri, Jacqueline A.; Collins, James J.

Schistosome Infection Impacts Hematopoiesis

JOURNAL OF IMMUNOLOGY

IF3.4

2024-01-03

OAAI

Wijshake, Tobias; Rose, Joseph; Wang, Jipeng; Zielke, Jacob; Marlar-pavey, Madeleine; Chen, Weina; Collins, James J.; Agathocleous, Michalis

Perspective on Schistosomiasis Drug Discovery: Highlights from a Schistosomiasis Drug Discovery Workshop at Wellcome Collection, London, September 2022

ACS INFECTIOUS DISEASES

IF3.8

2023-04-21

OAAI

Caldwell, Nicola; Afshar, Rana; Baragana, Beatriz; Bustinduy, Amaya L.; Caffrey, Conor R. .; Collins, James J.; Fusco, Daniela; Garba, Amadou; Gardner, Mark; Gomes, Mireille; Hoffmann, Karl F.; Hsieh, Michael; Lo, Nathan C.; McNamara, Case W.; Nono, Justin Komguep; Padalino, Gilda; Read, Kevin D.; Roestenberg, Meta; Spangenberg, Thomas; Specht, Sabine; Gilbert, Ian H.

Na+ Dysregulation Coupled with Ca2+ Entry through NCX1 Promotes Muscular Dystrophy in Mice

MOLECULAR AND CELLULAR BIOLOGY

IF2.7

2023-03-20

OAAI

Burr, Adam R.; Millay, Douglas P.; Goonasekera, Sanjeewa A.; Park, Ki Ho; Sargent, Michelle A.; Collins, James; Altamirano, Francisco; Philipson, Kenneth D.; Allen, Paul D.; Ma, Jianjie; Lopez, Jose Rafael; Molkentin, Jeffery D.

Convergent evolution of a genotoxic stress response in a parasite-specific p53 homolog

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2022-09-06

OAAI

Wendt, George R.; Shiroor, Divya A.; Adler, Carolyn E.; Collins, James J., III

Schistosome Sulfotransferases: Mode of Action, Expression and Localization

PHARMACEUTICS

IF5.5

2022-07-06

OAAI

Guzman, Meghan A.; Rugel, Anastasia; Alwan, Sevan N.; Tarpley, Reid; Taylor, Alexander B.; Chevalier, Frederic D.; Wendt, George R.; Collins, James J., III; Anderson, Timothy J. C.; McHardy, Stanton F.; LoVerde, Philip T.

MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni (vol 11, e0005559, 2017)

PLOS NEGLECTED TROPICAL DISEASES

IF3.4

2022-06-06

OAAI

Protasio, Anna V.; van Dongen, Stijn; Collins, Julie; Quintais, Leonor; Ribeiro, Diogo M.; Sessler, Florian; Hunt, Martin; Rinaldi, Gabriel; Collins, James J.; Enright, Anton J.; Berriman, Matthew

Intron mutations and early transcription termination in Duchenne and Becker muscular dystrophy 杜氏和贝克尔肌营养不良症的内含子突变和早期转录终止

HUMAN MUTATION

IF3.7

2022-03-07

OAAI

Waldrop, Megan A.; Moore, Steven A.; Mathews, Katherine D.; Darbro, Benjamin W.; Medne, Livja; Finkel, Richard; Connolly, Anne M.; Crawford, Thomas O.; Drachman, Daniel; Wein, Nicolas; Habib, Ali A.; Krzesniak-Swinarska, Monika A.; Zaidman, Craig M.; Collins, James J.; Jokela, Manu; Udd, Bjarne; Day, John W.; Ortiz-Guerrero, Gloria; Statland, Jeff; Butterfield, Russell J.; Dunn, Diane M.; Weiss, Robert B.; Flanigan, Kevin M.

Analysis of Schistosoma mansoni Extracellular Vesicles Surface Glycans Reveals Potential Immune Evasion Mechanism and New Insights on Their Origins of Biogenesis

PATHOGENS

IF3.3

2021-10-29

OAAI

Dagenais, Maude; Gerlach, Jared Q.; Wendt, George R.; Collins, James J.; Atkinson, Louise E.; Mousley, Angela; Geary, Timothy G.; Long, Thavy

SchistoCyte Atlas: A Single-Cell Transcriptome Resource for Adult Schistosomes

Trends in Parasitology

IF6.6

2021-07-01

OAAI

Wendt, George R.; Reese, Michael L.; Collins, James J., III

Schistosoma mansoni venom allergen-like protein 6 (SmVAL6) maintains tegumental barrier function 曼氏血吸虫毒液过敏原样蛋白6 (SmVAL6) 维持皮肤屏障功能

INTERNATIONAL JOURNAL FOR PARASITOLOGY

IF3.2

2021-03-01

OAAI

Perally, Samirah; Geyer, Kathrin K.; Farani, Priscila S. G.; Chalmers, Iain W.; Fernandez-Fuentes, Narcis; Maskell, Daniel R.; Hulme, Benjamin J.; Forde-Thomas, Josephine; Phillips, Dylan; Farias, Leonardo P.; Collins III, James J.; Hoffmann, Karl F.

研究方向