Erik N. Bergstrom - Publications, H-index & Citations

Erik N. Bergstrom

university of california, san diego

39H指数

138论文数

2.4W被引数

收录论文 17

发表时间

Prior therapy defines mutation profiles in childhood cancer at relapse 既往治疗定义了儿童癌症复发时的突变谱

Nature

IF48.5

2026-07-22

OAAI

Mehdi Layeghifard; Marcos Díaz-Gay; Erik N. Bergstrom; Mathepan J. Mahendralingam; Nicholas Light; Sasha Blay; Joshua O. Nash; Nathaniel D. Anderson; Jessica N. Au; Scott Davidson; Pedro L. Ballester; Timmy Wen; Syed Kashif Daud; Lisa-Monique Edward; S. M. Ashiqul Islam; Azhar Khandekar; Burçak Otlu; Ledia Brunga; Rawan Hammad; Shimaa Nassif; Nirav H. Thacker; Tara Feltham; Noemi A. Fuentes-Bolanos; Marie Wong-Erasmus; Max F. Levine; Katherine E. Miller; Neerav N. Shukla; Michael D. Kinnaman; Dominik Glodzik; Carol Portwine; Sabrina Millson; Alexandra P. Zorzi; Mariam Mikhail; Conrad V. Fernandez; Laura Wheaton; Gunes Gundem; Andrew L. Kung; Uri Tabori; Chelsea Mayoh; Elli Papaemmanuil; Mark J. Cowley; David Malkin; Anita Villani; Ludmil B. Alexandrov; Adam Shlien

Evaluating AlphaFold Tools and Related Scoring Functions for Protein–peptide Complex Prediction 评估AlphaFold工具及相关评分函数在蛋白质-肽复合物预测中的应用

Genomics, Proteomics & Bioinformatics

IF0

2026-03-26

OAAI

Negin Manshour; Jarett Zida Ren; Farzaneh Esmaili; Erik Bergstrom; Dong Xu; null

The mutagenic forces shaping the genomes of lung cancer in never smokers 在从不吸烟者中塑造肺癌基因组的诱变力

Nature

IF48.5

2025-07-02

PREAI

Marcos Díaz-Gay; Tongwu Zhang; Phuc H. Hoang; Charles Leduc; Marina K. Baine; William D. Travis; Lynette M. Sholl; Philippe Joubert; Azhar Khandekar; Wei Zhao; Christopher D. Steele; Burçak Otlu; Shuvro P. Nandi; Raviteja Vangara; Erik N. Bergstrom; Mariya Kazachkova; Oriol Pich; Charles Swanton; Chao Agnes Hsiung; I-Shou Chang; Maria Pik Wong; Kin Chung Leung; Jian Sang; John P. McElderry; Caleb Hartman; Frank J. Colón-Matos; Mona Miraftab; Monjoy Saha; Olivia W. Lee; Kristine M. Jones; Pilar Gallego-García; Yang Yang; Xiaoming Zhong; Eric S. Edell; Jacobo Martínez Santamaría; Matthew B. Schabath; Sai S. Yendamuri; Marta Manczuk; Jolanta Lissowska; Beata Świątkowska; Anush Mukeria; Oxana Shangina; David Zaridze; Ivana Holcatova; Dana Mates; Sasa Milosavljevic; Millica Kontic; Yohan Bossé; Bonnie E. Gould Rothberg; David C. Christiani; Valerie Gaborieau; Paul Brennan; Geoffrey Liu; Paul Hofman; Lixing Yang; Martin A. Nowak; Jianxin Shi; Nathaniel Rothman; David C. Wedge; Robert Homer; Soo-Ryum Yang; Angela C. Pesatori; Dario Consonni; Qing Lan; Bin Zhu; Stephen J. Chanock; Jiyeon Choi; Ludmil B. Alexandrov; Maria Teresa Landi

APOBEC affects tumor evolution and age at onset of lung cancer in smokers APOBEC影响吸烟者肺癌的肿瘤进化和发病年龄

NATURE COMMUNICATIONS

IF15.7

2025-05-21

OAAI

Zhang, Tongwu; Sang, Jian; Hoang, Phuc H.; Zhao, Wei; Rosenbaum, Jennifer; Johnson, Kofi Ennu; Klimczak, Leszek J.; McElderry, John; Klein, Alyssa; Wirth, Christopher; Bergstrom, Erik N.; Diaz-Gay, Marcos; Vangara, Raviteja; Colon-Matos, Frank; Hutchinson, Amy; Lawrence, Scott M.; Cole, Nathan; Zhu, Bin; Przytycka, Teresa M.; Shi, Jianxin; Caporaso, Neil E.; Homer, Robert; Pesatori, Angela C.; Consonni, Dario; Imielinski, Marcin; Chanock, Stephen J.; Wedge, David C.; Gordenin, Dmitry A.; Alexandrov, Ludmil B.; Harris, Reuben S.; Landi, Maria Teresa

Geographic and age variations in mutational processes in colorectal cancer 结直肠癌中突变过程的地域和年龄差异

NATURE

IF48.5

2025-04-23

PREAI

Diaz-Gay, Marcos; dos Santos, Wellington; Moody, Sarah; Kazachkova, Mariya; Abbasi, Ammal; Steele, Christopher D.; Vangara, Raviteja; Senkin, Sergey; Wang, Jingwei; Fitzgerald, Stephen; Bergstrom, Erik N.; Khandekar, Azhar; Otlu, Burcak; Abedi-Ardekani, Behnoush; de Carvalho, Ana Carolina; Cattiaux, Thomas; Penha, Ricardo Cortez Cardoso; Gaborieau, Valerie; Chopard, Priscilia; Carreira, Christine; Cheema, Saamin; Latimer, Calli; Teague, Jon W.; Mukeriya, Anush; Zaridze, David; Cox, Riley; Albert, Monique; Phouthavongsy, Larry; Gallinger, Steven; Malekzadeh, Reza; Niavarani, Ahmadreza; Miladinov, Marko; Eric, Katarina; Milosavljevic, Sasa; Sangrajrang, Suleeporn; Curado, Maria Paula; Aguiar, Samuel; Reis, Monise Tadin; Romagnolo, Luis Gustavo; Guimaraes, Denise Peixoto; Holcatova, Ivana; Kalvach, Jaroslav; Vaccaro, Carlos Alberto; Pinero, Tamara Alejandra; Swiatkowska, Beata; Lissowska, Jolanta; Roszkowska-Purska, Katarzyna; Huertas-Salgado, Antonio; Shibata, Tatsuhiro; Shiba, Satoshi; Sangkhathat, Surasak; Chitapanarux, Taned; Roshandel, Gholamreza; Ashton-Prolla, Patricia; Damin, Daniel C.; de Oliveira, Francine Hehn; Humphreys, Laura; Lawley, Trevor D.; Perdomo, Sandra; Stratton, Michael R.; Brennan, Paul

The complexity of tobacco smoke-induced mutagenesis in head and neck cancer 烟草烟雾诱导的头颈癌突变形成的复杂性

NATURE GENETICS

IF0

2025-03-31

OAAI

Torrens, Laura; Moody, Sarah; de Carvalho, Ana Carolina; Kazachkova, Mariya; Abedi-Ardekani, Behnoush; Cheema, Saamin; Senkin, Sergey; Cattiaux, Thomas; Penha, Ricardo Cortez Cardoso; Atkins, Joshua R.; Gaborieau, Valerie; Chopard, Priscilia; Carreira, Christine; Abbasi, Ammal; Bergstrom, Erik N.; Vangara, Raviteja; Wang, Jingwei; Fitzgerald, Stephen; Latimer, Calli; Diaz-Gay, Marcos; Jones, David; Teague, Jon; Pinto, Felipe Ribeiro; Kowalski, Luiz Paulo; Polesel, Jerry; Giudici, Fabiola; de Oliveira, Jose Carlos; Lagiou, Pagona; Lagiou, Areti; Vilensky, Marta; Mates, Dana; Mates, Ioan N.; Arantes, Lidia M.; Reis, Rui; Podesta, Jose Roberto V.; von Zeidler, Sandra V.; Holcatova, Ivana; Curado, Maria Paula; Canova, Cristina; Fabianova, Elenora; Rodriguez-Urrego, Paula A.; Humphreys, Laura; Alexandrov, Ludmil B.; Brennan, Paul; Stratton, Michael R.; Perdomo, Sandra

Chemotherapy is a major mutagen in relapsed childhood cancer

CANCER RESEARCH

IF16.6

2024-09-05

PREAI

Layeghifard, Mehdi; Light, Nicholas; Bergstrom, Erik; Gay, Marcos Diaz; Mahendralingam, Mathepan J.; Blay, Sasha; Davidson, Scott; Ballester, Pedro L.; Hammad, Rawan; Bolanos, Noemi Fuentes; Nassif, Shimaa; Thacker, Nirav H.; Mayoh, Chelsea; Malkin, David; Papaemmanuil, Elli; Cowley, Mark J.; Villani, Anita; Alexandrov, Ludmil B.; Shlien, Adam

Enhanced precision in immunotherapy

NATURE CANCER

IF28.5

2024-08-12

PREAI

Bergstrom, Erik N.; Alexandrov, Ludmil B.

Deep learning AI predicts HRD and platinum response from histologic slides

CANCER RESEARCH

IF16.6

2024-04-05

PREAI

Bergstrom, Erik N.; Abbasi, Ammal; Diaz-Gay, Marcos; Galland, Loick; Ladoire, Sylvain; Lippman, Scott M.; Alexandrov, Ludmil B.

APOBEC3B regulates R-loops and promotes transcription-associated mutagenesis in cancer

NATURE GENETICS

IF31.8

2023-09-21

OAAI

McCann, Jennifer L.; Cristini, Agnese; Law, Emily K.; Lee, Seo Yun; Tellier, Michael; Carpenter, Michael A.; Beghe, Chiara; Kim, Jae Jin; Sanchez, Anthony; Jarvis, Matthew C.; Stefanovska, Bojana; Temiz, Nuri A.; Bergstrom, Erik N.; Salamango, Daniel J.; Brown, Margaret R.; Murphy, Shona; Alexandrov, Ludmil B.; Miller, Kyle M.; Gromak, Natalia; Harris, Reuben S.

Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator

BMC GENOMICS

IF3.7

2023-08-21

OAAI

Khandekar, Azhar; Vangara, Raviteja; Barnes, Mark; Diaz-Gay, Marcos; Abbasi, Ammal; Bergstrom, Erik N.; Steele, Christopher D.; Pillay, Nischalan; Alexandrov, Ludmil B.

Topography of mutational signatures in human cancer

CELL REPORTS

IF6.9

2023-08-01

OAAI

Otlu, Burcak; Diaz-Gay, Marcos; Vermes, Ian; Bergstrom, Erik N.; Zhivagui, Maria; Barnes, Mark; Alexandrov, Ludmil B.

APOBEC deaminases compete with tobacco smoking mutagenesis and affect age at onset of lung cancer

CANCER RESEARCH

IF16.6

2023-04-04

PREAI

Zhang, Tongwu; Sang, Jian; Hoang, Phuc H.; Zhao, Wei; Rosenbaum, Jennifer; Klimczak, Leszek J.; McElderry, John; Klein, Alyssa; Wirth, Christopher; Bergstrom, Erik N.; Diaz-Gay, Marcos; Vangara, Raviteja; Hutchinson, Amy; Lawrence, Scott M.; Cole, Nathan; Zhu, Bin; Przytycka, Teresa M.; Shi, Jianxin; Caporaso, Neil E.; Homer, Robert; Pesatori, Angela C.; Consonni, Dario; Chanock, Stephen J.; Wedge, David C.; Gordenin, Dmitry A.; Alexandrov, Ludmil B.; Harris, Reuben S.; Landi, Maria Teresa

Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity

NATURE GENETICS

IF31.8

2023-03-16

OAAI

Mangiante, Lise; Alcala, Nicolas; Sexton-Oates, Alexandra; Di Genova, Alex; Gonzalez-Perez, Abel; Khandekar, Azhar; Bergstrom, Erik N.; Kim, Jaehee; Liu, Xiran; Blazquez-Encinas, Ricardo; Giacobi, Colin; Le Stang, Nolwenn; Boyault, Sandrine; Cuenin, Cyrille; Tabone-Eglinger, Severine; Damiola, Francesca; Voegele, Catherine; Ardin, Maude; Michallet, Marie-Cecile; Soudade, Lorraine; Delhomme, Tiffany M.; Poret, Arnaud; Brevet, Marie; Copin, Marie-Christine; Giusiano-Courcambeck, Sophie; Damotte, Diane; Girard, Cecile; Hofman, Veronique; Hofman, Paul; Mouroux, Jerome; Cohen, Charlotte; Lacomme, Stephanie; Mazieres, Julien; de Montpreville, Vincent Thomas; Perrin, Corinne; Planchard, Gaetane; Rousseau, Nathalie; Rouquette, Isabelle; Sagan, Christine; Scherpereel, Arnaud; Thivolet, Francoise; Vignaud, Jean-Michel; Jean, Didier; Ilg, Anabelle Gilg Soit; Olaso, Robert; Meyer, Vincent; Boland-Auge, Anne; Deleuze, Jean-Francois; Altmuller, Janine; Nuernberg, Peter; Ibanez-Costa, Alejandro; Castano, Justo P.; Lantuejoul, Sylvie; Ghantous, Akram; Maussion, Charles; Courtiol, Pierre; Hernandez-Vargas, Hector; Caux, Christophe; Girard, Nicolas; Lopez-Bigas, Nuria; Alexandrov, Ludmil B.; Galateau-Salle, Francoise; Foll, Matthieu; Fernandez-Cuesta, Lynnette

Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor 用SigProfilerExtractor从头提取发现新的突变特征

CELL GENOMICS

IF9

2022-11-01

OAAI

Islam, S. M. Ashiqul; Diaz-Gay, Marcos; Wu, Yang; Barnes, Mark; Vangara, Raviteja; Bergstrom, Erik N.; He, Yudou; Vella, Mike; Wang, Jingwei; Teague, Jon W.; Clapham, Peter; Moody, Sarah; Senkin, Sergey; Li, Yun Rose; Riva, Laura; Zhang, Tongwu; Gruber, Andreas J.; Steele, Christopher D.; Otlu, Burcak; Khandekar, Azhar; Abbasi, Ammal; Humphreys, Laura; Syulyukina, Natalia; Brady, Samuel W.; Alexandrov, Boian S.; Pillay, Nischalan; Zhang, Jinghui; Adams, David J.; Martincorena, Inigo; Wedge, David C.; Landi, Maria Teresa; Brennan, Paul; Stratton, Michael R.; Rozen, Steven G.; Alexandrov, Ludmil B.

Mutational signatures in esophageal squamous cell carcinoma from eight countries with varying incidence

NATURE GENETICS

IF31.8

2021-10-18

OAAI

Moody, Sarah; Senkin, Sergey; Islam, S. M. Ashiqul; Wang, Jingwei; Nasrollahzadeh, Dariush; Penha, Ricardo Cortez Cardoso; Fitzgerald, Stephen; Bergstrom, Erik N.; Atkins, Joshua; He, Yudou; Khandekar, Azhar; Smith-Byrne, Karl; Carreira, Christine; Gaborieau, Valerie; Latimer, Calli; Thomas, Emily; Abnizova, Irina; Bucciarelli, Pauline E.; Jones, David; Teague, Jon W.; Abedi-Ardekani, Behnoush; Serra, Stefano; Scoazec, Jean-Yves; Saffar, Hiva; Azmoudeh-Ardalan, Farid; Sotoudeh, Masoud; Nikmanesh, Arash; Poustchi, Hossein; Niavarani, Ahmadreza; Gharavi, Samad; Eden, Michael; Richman, Paul; Campos, Lia S.; Fitzgerald, Rebecca C.; Ribeiro, Luis Felipe; Soares-Lima, Sheila Coelho; Dzamalala, Charles; Mmbaga, Blandina Theophil; Shibata, Tatsuhiro; Menya, Diana; Goldstein, Alisa M.; Hu, Nan; Malekzadeh, Reza; Fazel, Abdolreza; McCormack, Valerie; McKay, James; Perdomo, Sandra; Scelo, Ghislaine; Chanudet, Estelle; Humphreys, Laura; Alexandrov, Ludmil B.; Brennan, Paul; Stratton, Michael R.

SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events SigProfilerMatrixGenerator: 用于可视化和探索小突变事件模式的工具

BMC GENOMICS

IF3.7

2019-08-30

165

OAAI

Bergstrom, Erik N.; Huang, Mi Ni; Mahto, Uma; Barnes, Mark; Stratton, Michael R.; Rozen, Steven G.; Alexandrov, Ludmil B.

研究方向