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The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data Menschaert, Gerben; Wang, Xiaojing; Jones, Andrew R.; Ghali, Fawaz; Fenyo, David; Olexiouk, Volodimir; Zhang, Bing; Deutsch, Eric W.; Ternent, Tobias; Vizcaino, Juan Antonio 分享 收藏
The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics Vizcaino, Juan Antonio; Mayer, Gerhard; Perkins, Simon; Barsnes, Harald; Vaudel, Marc; Perez-Riverol, Yasset; Ternent, Tobias; Uszkoreit, Julian; Eisenacher, Martin; Fischer, Lutz; Rappsilber, Juri; Netz, Eugen; Walzer, Mathias; Kohlbacher, Oliver; Leitner, Alexander; Chalkley, Robert J.; Ghali, Fawaz; Martinez-Bartolome, Salvador; Deutsch, Eric W.; Jones, Andrew R. 分享 收藏
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IPeak: An open source tool to combine results from multiple MS/MS search engines Wen, Bo; Du, Chaoqin; Li, Guilin; Ghali, Fawaz; Jones, Andrew R.; Kall, Lukas; Xu, Shaohang; Zhou, Ruo; Ren, Zhe; Feng, Qiang; Xu, Xun; Wang, Jun 分享 收藏
A large-scale proteogenomics study of apicomplexan pathogens-Toxoplasma gondii and Neospora caninum Krishna, Ritesh; Xia, Dong; Sanderson, Sanya; Shanmugasundram, Achchuthan; Vermont, Sarah; Bernal, Axel; Daniel-Naguib, Gianluca; Ghali, Fawaz; Brunk, Brian P.; Roos, David S.; Wastling, Jonathan M.; Jones, Andrew R. 分享 收藏
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The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience Griss, Johannes; Jones, Andrew R.; Sachsenberg, Timo; Walzer, Mathias; Gatto, Laurent; Hartler, Juergen; Thallinger, Gerhard G.; Salek, Reza M.; Steinbeck, Christoph; Neuhauser, Nadin; Cox, Juergen; Neumann, Steffen; Fan, Jun; Reisinger, Florian; Xu, Qing-Wei; del Toro, Noemi; Perez-Riverol, Yasset; Ghali, Fawaz; Bandeira, Nuno; Xenarios, Ioannis; Kohlbacher, Oliver; Vizcaino, Juan Antonio; Hermjakob, Henning 分享 收藏
A standardized framing for reporting protein identifications in mzIdentML 1.2 用于报告mzIdentML 1.2中蛋白质鉴定的标准化框架 Seymour, Sean L.; Farrah, Terry; Binz, Pierre-Alain; Chalkley, Robert J.; Cottrell, John S.; Searle, Brian C.; Tabb, David L.; Vizcaino, Juan Antonio; Prieto, Gorka; Uszkoreit, Julian; Eisenacher, Martin; Martinez-Bartolome, Salvador; Ghali, Fawaz; Jones, Andrew R. 分享 收藏
Tools (Viewer, Library and Validator) that Facilitate Use of the Peptide and Protein Identification Standard Format, Termed mzIdentML Ghali, Fawaz; Krishna, Ritesh; Lukasse, Pieter; Martinez-Bartolome, Salvador; Reisinger, Florian; Hermjakob, Henning; Vizcaino, Juan Antonio; Jones, Andrew R. 分享 收藏
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