David S. Holmes - Publications, H-index & Citations | 科言猫

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David S. Holmes

Universidad San Sebastian

57H指数

337论文数

1.4W被引数

收录论文 68

发表时间

Sulphur metabolism as a key factor in the evolution of environmental adaptation of Acidihalobacter 硫代谢作为 Acidihalobacter 环境适应性进化的关键因素

Microbial Genomics

IF4

2026-05-01

0

PREAI

Vergara, Eva; Khaleque, Himel Nahreen; Neira, Gonzalo; Watkin, Elizabeth L. J.; Valdes, Jorge H.; Holmes, David S.

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Genomic insights into key mechanisms for carbon, nitrogen, and phosphate assimilation by the acidophilic, halotolerant genus Acidihalobacter members

FEMS MICROBIOLOGY ECOLOGY

IF3.2

2024-11-04

0

OAAI

Khaleque, Himel Nahreen; Fathollahzadeh, Homayoun; Kaksonen, Anna H.; Valdes, Jorge; Vergara, Eva; Holmes, David S.; Watkin, Elizabeth L. J.

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Eurypsychrophilic acidophiles: From (meta)genomes to low-temperature biotechnologies

FRONTIERS IN MICROBIOLOGY

IF4.5

2023-03-15

9

OAAI

Dopson, Mark; Gonzalez-Rosales, Carolina; Holmes, David S. S.; Mykytczuk, Nadia

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Genome-guided prediction of acid resistance mechanisms in acidophilic methanotrophs of phylogenetically deep-rooted Verrucomicrobia isolated from geothermal environments

FRONTIERS IN MICROBIOLOGY

IF4.5

2022-09-23

6

OAAI

Neira, Gonzalo; Vergara, Eva; Holmes, David S.

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Prediction and Inferred Evolution of Acid Tolerance Genes in the Biotechnologically Important Acidihalobacter Genus

FRONTIERS IN MICROBIOLOGY

IF4.5

2022-04-18

10

OAAI

Boase, Katelyn; Gonzalez, Carolina; Vergara, Eva; Neira, Gonzalo; Holmes, David; Watkin, Elizabeth

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A Large-Scale Genome-Based Survey of Acidophilic Bacteria Suggests That Genome Streamlining Is an Adaption for Life at Low pH

FRONTIERS IN MICROBIOLOGY

IF4.5

2022-03-21

14

OAAI

Cortez, Diego; Neira, Gonzalo; Gonzalez, Carolina; Vergara, Eva; Holmes, David S.

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Integrative Genomics Sheds Light on Evolutionary Forces Shaping the Acidithiobacillia Class Acidophilic Lifestyle

FRONTIERS IN MICROBIOLOGY

IF4.5

2022-02-15

19

OAAI

Gonzalez-Rosales, Carolina; Vergara, Eva; Dopson, Mark; Valdes, Jorge H.; Holmes, David S.

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SinEx DB 2.0 update 2020: database for eukaryotic single-exon coding sequences

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2021-01-28

1

OAAI

Jorquera, R.; Gonzalez, C.; Clausen, P. T. L. C.; Petersen, B.; Holmes, D. S.

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Identification and Unusual Properties of the Master Regulator FNR in the Extreme Acidophile Acidithiobacillus ferrooxidans

FRONTIERS IN MICROBIOLOGY

IF4.5

2019-07-19

12

OAAI

Osorio, Hector; Mettert, Erin; Kiley, Patricia; Dopson, Mark; Jedlicki, Eugenia; Holmes, David S.

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Effect of CO2 Concentration on Uptake and Assimilation of Inorganic Carbon in the Extreme Acidophile Acidithiobacillus ferrooxidans

FRONTIERS IN MICROBIOLOGY

IF4.5

2019-04-04

27

OAAI

Esparza, Mario; Jedlicki, Eugenia; Gonzalez, Carolina; Dopson, Mark; Holmes, David S.

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Uncovering the Mechanisms of Halotolerance in the Extremely Acidophilic Members of the Acidihalobacter Genus Through Comparative Genome Analysis

FRONTIERS IN MICROBIOLOGY

IF4.5

2019-02-08

30

OAAI

Khaleque, Himel N.; Gonzalez, Carolina; Shafique, Raihan; Kaksonen, Anna H.; Holmes, David S.; Watkin, Elizabeth L. J.

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Improved ontology for eukaryotic single-exon coding sequences in biological databases

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2018-09-18

7

OAAI

Jorquera, Roddy; Gonzalez, Carolina; Clausen, Philip; Petersen, Bent; Holmes, David S.

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A genetic linkage study of the D-2 dopamine receptor locus in heavy drinking and alcoholism

BRITISH JOURNAL OF PSYCHIATRY

IF7.6

2018-01-02

39

PREAI

Cook, CCH; Palsson, G; Turner, A; Holmes, D; Brett, P; Curtis, D; Petursson, H; Gurling, HMD

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Mutantelec: An In Silico Mutation Simulation Platform for Comparative Electrostatic Potential Profiling of Proteins

JOURNAL OF COMPUTATIONAL CHEMISTRY

IF4.8

2017-01-23

5

OAAI

Valdebenito-Maturana, Braulio; Reyes-Suarez, Jose Antonio; Henriquez, Jaime; Holmes, David S.; Quatrini, Raquel; Pohl, Ehmke; Arenas-Salinas, Mauricio

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Multiple Osmotic Stress Responses in Acidihalobacter prosperus Result in Tolerance to Chloride Ions

FRONTIERS IN MICROBIOLOGY

IF4.5

2017-01-05

44

OAAI

Dopson, Mark; Holmes, David S.; Lazcano, Marcelo; McCredden, Timothy J.; Bryan, Christopher G.; Mulroney, Kieran T.; Steuart, Robert; Jackaman, Connie; Watkin, Elizabeth L. J.

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Bioinformatic Analyses of Unique (Orphan) Core Genes of the Genus Acidithiobacillus: Functional Inferences and Use As Molecular Probes for Genomic and Metagenomic/Transcriptomic Interrogation

FRONTIERS IN MICROBIOLOGY

IF4.5

2016-12-27

13

OAAI

Gonzalez, Carolina; Lazcano, Marcelo; Valdes, Jorge; Holmes, David S.

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Aerobic Lineage of the Oxidative Stress Response Protein Rubrerythrin Emerged in an Ancient Microaerobic, (Hyper)Thermophilic Environment

FRONTIERS IN MICROBIOLOGY

IF4.5

2016-11-18

34

PREAI

Cardenas, Juan P.; Quatrini, Raquel; Holmes, David S.

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SinEx DB: a database for single exon coding sequences in mammalian genomes

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2016-06-07

20

OAAI

Jorquera, Roddy; Ortiz, Rodrigo; Ossandon, F.; Pablo Cardenas, Juan; Sepulveda, Rene; Gonzalez, Carolina; Holmes, David S.

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Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile Ferrovum

FRONTIERS IN MICROBIOLOGY

IF4.5

2016-05-31

37

OAAI

Ullrich, Sophie R.; Gonzalez, Carolina; Poehlein, Anja; Tischler, Judith S.; Daniel, Rolf; Schloemann, Michael; Holmes, David S.; Muehling, Martin

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Metagenomic analysis reveals adaptations to a cold-adapted lifestyle in a low-temperature acid mine drainage stream

FEMS MICROBIOLOGY ECOLOGY

IF3.2

2015-01-28

74

OAAI

Liljeqvist, Maria; Ossandon, Francisco J.; Gonzalez, Carolina; Rajan, Sukithar; Stell, Adam; Valdes, Jorge; Holmes, David S.; Dopson, Mark

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