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Migun Shakya

united states department of energy (doe)

16H指数
84论文数
2.2K被引数
收录论文 18
发表时间
Recovering new viruses from New Mexico soils从新墨西哥土壤中恢复新病毒
err2025-10-01
err0
PREAI
errFeeser, Kelli; Longley, Reid; Gallegos-Graves, La Verne; Albright, Michaeline; Shakya, Migun
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Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows跨生物信息学工作流程对SARS-CoV-2基因组序列进行统一变异调用的建议
err2024-03-11
err1
errOAAI
errConnor, Ryan; Shakya, Migun; Yarmosh, David A.; Maier, Wolfgang; Martin, Ross; Bradford, Rebecca; Brister, J. Rodney; Chain, Patrick S. G.; Copeland, Courtney A.; di Iulio, Julia; Hu, Bin; Ebert, Philip; Gunti, Jonathan; Jin, Yumi; Katz, Kenneth S.; Kochergin, Andrey; LaRosa, Tre; Li, Jiani; Li, Po-E; Lo, Chien-Chi; Rashid, Sujatha; Maiorova, Evguenia S.; Xiao, Chunlin; Zalunin, Vadim; Purcell, Lisa; Pruitt, Kim D.
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The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource
err2022-10-30
err27
errOAAI
errEloe-Fadrosh, Emiley A.; Ahmed, Faiza; Anubhav; Babinski, Michal; Baumes, Jeffrey; Borkum, Mark; Bramer, Lisa; Canon, Shane; Christianson, Danielle S.; Corilo, Yuri E.; Davenport, Karen W.; Davis, Brandon; Drake, Meghan; Duncan, William D.; Flynn, Mark C.; Hays, David; Hu, Bin; Huntemann, Marcel; Kelliher, Julia; Lebedeva, Sofya; Li, Po-E; Lipton, Mary; Lo, Chien-Chi; Martin, Stanton; Millard, David; Miller, Kayd; Miller, Mark A.; Piehowski, Paul; Jackson, Elais Player; Purvine, Samuel; Reddy, T. B. K.; Richardson, Rachel; Rudolph, Marisa; Sarrafan, Setareh; Shakya, Migun; Smith, Montana; Stratton, Kelly; Sundaramurthi, Jagadish Chandrabose; Vangay, Pajau; Winston, Donald; Wood-Charlson, Elisha M.; Xu, Yan; Chain, Patrick S. G.; McCue, Lee Ann; Mans, Douglas; Mungall, Christopher J.; Mouncey, Nigel J.; Fagnan, Kjiersten
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Experimental evidence for the impact of soil viruses on carbon cycling during surface plant litter decomposition
err2022-03-16
err38
errOAAI
errAlbright, Michaeline B. N.; Gallegos-Graves, La Verne; Feeser, Kelli L.; Montoya, Kyana; Emerson, Joanne B.; Shakya, Migun; Dunbar, John
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Comparative genomic and phenotypic characterization of invasive non-typhoidal Salmonella isolates from Siaya, Kenya来自肯尼亚Siaya的侵入性非伤寒沙门氏菌分离株的比较基因组和表型特征
err2021-02-01
err2
errOAAI
errKubicek-Sutherland, Jessica Z.; Xie, Gary; Shakya, Migun; Dighe, Priya K.; Jacobs, Lindsey L.; Daligault, Hajnalka; Davenport, Karen; Stromberg, Loreen R.; Stromberg, Zachary R.; Cheng, Qiuying; Kempaiah, Prakasha; Ong'echa, John Michael; Otieno, Vincent; Raballah, Evans; Anyona, Samuel; Ouma, Collins; Chain, Patrick S. G.; Perkins, Douglas J.; Mukundan, Harshini; McMahon, Benjamin H.; Doggett, Norman A.
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NCBI's Virus Discovery Codeathon: Building FIVE -The Federated Index of Viral Experiments API Index
err2020-12-10
err5
errOAAI
errMarti-Carreras, Joan; Gener, Alejandro Rafael; Miller, Sierra D.; Brito, Anderson F.; Camacho, Christiam E.; Connor, Ryan; Deboutte, Ward; Glickman, Cody; Kristensen, David M.; Meyer, Wynn K.; Modha, Sejal; Norris, Alexis L.; Saha, Surya; Belford, Anna K.; Biederstedt, Evan; Brister, James Rodney; Buchmann, Jan P.; Cooley, Nicholas P.; Edwards, Robert A.; Javkar, Kiran; Muchow, Michael; Muralidharan, Harihara Subrahmaniam; Pepe-Ranney, Charles; Shah, Nidhi; Shakya, Migun; Tisza, Michael J.; Tully, Benjamin J.; Vanmechelen, Bert; Virta, Valerie C.; Weissman, J. L.; Zalunin, Vadim; Efremov, Alexandre; Busby, Ben
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The National Microbiome Data Collaborative: enabling microbiome science
err2020-04-29
err46
errOAAI
errWood-Charlson, Elisha M.; Anubhav; Auberry, Deanna; Blanco, Hannah; Borkum, Mark I.; Corilo, Yuri E.; Davenport, Karen W.; Deshpande, Shweta; Devarakonda, Ranjeet; Drake, Meghan; Duncan, William D.; Flynn, Mark C.; Hays, David; Hu, Bin; Huntemann, Marcel; Li, Po-E; Lipton, Mary; Lo, Chien-Chi; Millard, David; Miller, Kayd; Piehowski, Paul D.; Purvine, Samuel; Reddy, T. B. K.; Shakya, Migun; Sundaramurthi, Jagadish Chandrabose; Vangay, Pajau; Wei, Yaxing; Wilson, Bruce E.; Canon, Shane; Chain, Patrick S. G.; Fagnan, Kjiersten; Martin, Stanton; McCue, Lee Ann; Mungall, Christopher J.; Mouncey, Nigel J.; Maxon, Mary E.; Eloe-Fadrosh, Emiley A.
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A Gene Cluster That Encodes Histone Deacetylase Inhibitors Contributes to Bacterial Persistence and Antibiotic Tolerance in Burkholderia thailandensis
err2020-02-11
err3
errOAAI
errMicheva-Viteva, Sofiya N.; Shakya, Migun; Adikari, Samantha H.; Gleasner, Cheryl D.; Velappan, Nileena; Mourant, Judith R.; Chain, Patrick S. G.; Hong-Geller, Elizabeth
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Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life
err2020-02-03
err76
errOAAI
errShakya, Migun; Ahmed, Sanaa A.; Davenport, Karen W.; Flynn, Mark C.; Lo, Chien-Chi; Chain, Patrick S. G.
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Machine-Learning Classification Suggests That Many Alphaproteobacterial Prophages May Instead Be Gene Transfer Agents
err2019-09-27
err22
errOAAI
errKogay, Roman; Neely, Taylor B.; Birnbaum, Daniel P.; Hankel, Camille R.; Shakya, Migun; Zhaxybayeva, Olga
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Novel Insights Into the Spread of Enteric Pathogens Using Genomics
err2019-09-20
err2
errOAAI
errDomman, Daryl; Ruis, Christopher; Dorman, Matthew J.; Shakya, Migun; Chain, Patrick S. G.
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Remedial Treatment of Corroded Iron Objects by Environmental Aeromonas Isolates
err2019-02-01
err11
errOAAI
errKooli, Wafa M.; Junier, Thomas; Shakya, Migun; Monachon, Mathilde; Davenport, Karen W.; Vaideeswaran, Kaushik; Vernudachi, Alexandre; Marozau, Ivan; Monrouzeau, Teddy; Gleasner, Cheryl D.; McMurry, Kim; Lienhard, Reto; Rufener, Lucien; Perret, Jean-Luc; Sereda, Olha; Chain, Patrick S.; Joseph, Edith; Junier, Pilar
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Insights into origin and evolution of α-proteobacterial gene transfer agents
err2017-12-07
err44
errOAAI
errShakya, Migun; Soucy, Shannon M.; Zhaxybayeva, Olga
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Functional and Evolutionary Characterization of a Gene Transfer Agent's Multilocus Genome
err2016-06-24
err43
errOAAI
errHynes, Alexander P.; Shakya, Migun; Mercer, Ryan G.; Grull, Marc P.; Bown, Luke; Davidson, Fraser; Steffen, Ekaterina; Matchem, Heidi; Peach, Mandy E.; Berger, Tim; Grebe, Katherine; Zhaxybayeva, Olga; Lang, Andrew S.
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A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling用于16s rRNA社区分析的协议和测序平台的全面基准研究
err2016-01-14
err318
errOAAI
errD'Amore, Rosalinda; Ijaz, Umer Zeeshan; Schirmer, Melanie; Kenny, John G.; Gregory, Richard; Darby, Alistair C.; Shakya, Migun; Podar, Mircea; Quince, Christopher; Hall, Neil
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Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities
err2013-02-06
err158
errOAAI
errShakya, Migun; Quince, Christopher; Campbell, James H.; Yang, Zamin K.; Schadt, Christopher W.; Podar, Mircea
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