Ammon Thompson - Publications, H-index & Citations

Ammon Thompson

university of texas system

10H指数

33论文数

542被引数

收录论文 13

发表时间

phyddle: Software for Exploring Phylogenetic Models with Deep Learning phyddle: 使用深度学习探索系统发育模型的软件

SYSTEMATIC BIOLOGY

IF5.7

2025-09-01

PREAI

Landis, Michael J.; Thompson, Ammon

Quantifying Transcriptome Turnover on Phylogenies by Modeling Gene Expression as a Binary Trait 通过将基因表达建模为二元性状，在系统发育树上量化转录组周转率

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2025-05-27

OAAI

Thompson, Ammon; May, Michael R.; Hopkins, Ben R.; Riedl, Nerisa; Barmina, Olga; Liebeskind, Benjamin J.; Zhao, Li; Begun, David; Kopp, Artyom

Decoupled evolution of the Sex Peptide gene family and Sex Peptide Receptor in Drosophilidae 性肽基因家族与性肽受体的解耦进化

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2024-01-12

OAAI

Hopkins, Ben R.; Angus-Henry, Aidan; Kim, Bernard Y.; Carlisle, Jolie A.; Thompson, Ammon; Kopp, Artyom

Deep Learning and Likelihood Approaches for Viral Phylogeography Converge on the Same Answers Whether the Inference Model Is Right or Wrong

SYSTEMATIC BIOLOGY

IF5.7

2024-01-08

OAAI

Thompson, Ammon; Liebeskind, Benjamin J.; Scully, Erik J.; Landis, Michael J.

Natural variation in the maternal and zygotic mRNA complements of the early embryo in Drosophila melanogaster

BMC GENOMICS

IF3.7

2022-09-08

OAAI

Feitzinger, Anna A.; Le, Anthony; Thompson, Ammon; Haseeb, Mehnoor; Murugesan, Mohan Koumar; Tang, Austin M.; Lott, Susan E.

Secondary reversion to sexual monomorphism associated with tissue-specific loss of doublesex expression

EVOLUTION

IF2.6

2022-07-23

OAAI

Gao, Jian-jun; Barmina, Olga; Thompson, Ammon; Kim, Bernard Y.; Suvorov, Anton; Tanaka, Kohtaro; Watabe, Hideaki; Toda, Masanori J.; Chen, Ji-Min; Katoh, Takehiro K.; Kopp, Artyom

Highly contiguous assemblies of 101 drosophilid genomes (vol 10, e66405, 2021)

ELIFE

IF0

2022-03-18

OAAI

Kim, Bernard Y.; Wang, Jeremy R.; Miller, Danny E.; Barmina, Olga; Delaney, Emily; Thompson, Ammon; Comeault, Aaron A.; Peede, David; D'Agostino, Emmanuel R. R.; Pelaez, Julianne; Aguilar, Jessica M.; Haji, Diler; Matsunaga, Teruyuki; Armstrong, Ellie; Zych, Molly; Ogawa, Yoshitaka; Stamenkovic-Radak, Marina; Jelic, Mihailo; Veselinovic, Marija Savic; Tanaskovic, Marija; Eric, Pavle; Gao, Jian-Jun; Katoh, Takehiro K.; Toda, Masanori J.; Watabe, Hideaki; Watada, Masayoshi; Davis, Jeremy S.; Moyle, Leonie C.; Manoli, Giulia; Bertolini, Enrico; Kostal, Vladimir; Hawley, R. Scott; Takahashi, Aya; Jones, Corbin D.; Price, Donald K.; Whiteman, Noah; Kopp, Artyom; Matute, Daniel R.; Petrov, Dmitri A.

Highly contiguous assemblies of 101 drosophilid genomes 101的drosophiid基因组的高度连续组装

ELIFE

IF0

2021-07-19

103

OAAI

Kim, Bernard Y.; Wang, Jeremy R.; Miller, Danny E.; Barmina, Olga; Delaney, Emily; Thompson, Ammon; Comeault, Aaron A.; Peede, David; D'Agostino, Emmanuel R. R.; Pelaez, Julianne; Aguilar, Jessica M.; Haji, Diler; Matsunaga, Teruyuki; Armstrong, Ellie E.; Zych, Molly; Ogawa, Yoshitaka; Stamenkovic-Radak, Marina; Jelic, Mihailo; Veselinovic, Marija Savic; Tanaskovic, Marija; Eric, Pavle; Gao, Jian-Jun; Katoh, Takehiro K.; Toda, Masanori J.; Watabe, Hideaki; Watada, Masayoshi; Davis, Jeremy S.; Moyle, Leonie C.; Manoli, Giulia; Bertolini, Enrico; Kostal, Vladimir; Hawley, R. Scott; Takahashi, Aya; Jones, Corbin D.; Price, Donald K.; Whiteman, Noah; Kopp, Artyom; Matute, Daniel R.; Petrov, Dmitri A.

A hierarchical Bayesian mixture model for inferring the expression state of genes in transcriptomes 用于推断转录组中基因表达状态的分层贝叶斯混合模型

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-07-24

OAAI

Thompsona, Ammon; May, Michael R.; Moore, Brian R.; Koppa, Artyom

The Cone Opsin Repertoire of Osteoglossomorph Fishes: Gene Loss in Mormyrid Electric Fish and a Long Wavelength-Sensitive Cone Opsin That Survived 3R

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2018-12-27

PREAI

Liu, Da-Wei; Wang, Feng-Yu; Lin, Jinn-Jy; Thompson, Ammon; Lu, Ying; Vo, Derek; Yan, Hong Young; Zakon, Harold