Niarakis, Anna; Ostaszewski, Marek; Mazein, Alexander; Kuperstein, Inna; Kutmon, Martina; Gillespie, Marc E.; Funahashi, Akira; Acencio, Marcio Luis; Hemedan, Ahmed; Aichem, Michael; Klein, Karsten; Czauderna, Tobias; Burtscher, Felicia; Yamada, Takahiro G.; Hiki, Yusuke; Hiroi, Noriko F.; Hu, Finterly; Pham, Nhung; Ehrhart, Friederike; Willighagen, Egon L.; Valdeolivas, Alberto; Dugourd, Aurelien; Messina, Francesco; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Soliman, Sylvain; Aghamiri, Sara Sadat; Puniya, Bhanwar Lal; Naldi, Aurelien; Helikar, Tomas; Singh, Vidisha; Fernandez, Marco Farinas; Bermudez, Viviam; Tsirvouli, Eirini; Montagud, Arnau; Noel, Vincent; Ponce-de-Leon, Miguel; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Luna, Augustin; Pinero, Janet; Furlong, Laura I.; Balaur, Irina; Rougny, Adrien; Jarosz, Yohan; Overall, Rupert W.; Phair, Robert; Perfetto, Livia; Matthews, Lisa; Rex, Devasahayam Arokia Balaya; Orlic-Milacic, Marija; Gomez, Luis Cristobal Monraz; De Meulder, Bertrand; Ravel, Jean Marie; Jassal, Bijay; Satagopam, Venkata; Wu, Guanming; Golebiewski, Martin; Gawron, Piotr; Calzone, Laurence; Beckmann, Jacques S.; Evelo, Chris T.; D'Eustachio, Peter; Schreiber, Falk; Saez-Rodriguez, Julio; Dopazo, Joaquin; Kuiper, Martin; Valencia, Alfonso; Wolkenhauer, Olaf; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard

PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks

NPJ SYSTEMS BIOLOGY AND APPLICATIONS

IF3.5

2023-10-3016

OAAI

Genome-wide redistribution of meiotic double-strand breaks in Saccharomyces cerevisiae

MOLECULAR AND CELLULAR BIOLOGY

IF2.7

2023-03-2791

OAAI

A comparison of Sars-Cov-2 vaccine platforms: the CoviCompare project

Sars-Cov-2疫苗平台的比较: CoviCompare项目

NATURE MEDICINE

IF50

2022-05-059

Molino, Diana; Durier, Christine; Radenne, Anne; Desaint, Corinne; Ropers, Jacques; Courcier, Soizic; Vieillard, Louis Victorien; Rekacewicz, Claire; Parfait, Beatrice; Appay, Victor; Batteux, Frederic; Barillot, Emmanuel; Cogne, Michel; Combadiere, Behazine; Eberhardt, Christiane S.; Gorochov, Guy; Hupe, Philippe; Ninove, Laetitia; Paul, Stephane; Pellegrin, Isabelle; van der Werf, Sylvie; Lefebvre, Maeva; Botelho-Nevers, Elisabeth; Ortega-Perez, Inmaculada; Jaspard, Marie; Sow, Samba; Lelievre, Jean Daniel; de Lamballerie, Xavier; Kieny, Marie Paule; Tartour, Eric; Launay, Odile

UPMaBoSS: A Novel Framework for Dynamic Cell Population Modeling

FRONTIERS IN MOLECULAR BIOSCIENCES

IF4

2022-03-025

OAAI

Patient-specific Boolean models of signalling networks guide personalised treatments

ELIFE

IF0

2022-02-1538

Modeling Progression of Single Cell Populations Through the Cell Cycle as a Sequence of Switches

FRONTIERS IN MOLECULAR BIOSCIENCES

IF4

2022-02-013

OAAI

COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021)

新型冠状病毒肺炎疾病图谱，病毒-宿主相互作用机制的计算知识库 (第17卷，e10387，2021)

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2021-12-2349

OAAI

Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gomez, Luis Cristobal; Somers, Julia; Hoch, Matti; Kumar Gupta, Shailendra; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; Ponce de Leon, Miguel; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Drager, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Bornigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, D. A. B.; Slenter, Denise; Martens, Marvin; Pham, Nhung; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Senff-Ribeiro, Andrea; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Willighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard

WebMaBoSS: A Web Interface for Simulating Boolean Models Stochastically

FRONTIERS IN MOLECULAR BIOSCIENCES

IF4

2021-11-152

OAAI

COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms

COVID19疾病图谱，病毒-宿主相互作用机制的计算知识库

MOLECULAR SYSTEMS BIOLOGY

IF7.7

2021-10-1949

OAAI

Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Gomez, Luis Cristobal Monraz; Somers, Julia; Hoch, Matti; Gupta, Shailendra Kumar; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; de Leon, Miguel Ponce; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Draeger, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Boernigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, Devasahayam Arokia Balaya; Slenter, Denise; Martens, Marvin; Nhung Pham; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Ribeiro, Andrea Senff; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Wilighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard

A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression

NATURE COMMUNICATIONS

IF15.7

2021-09-2258

OAAI

Liu, Jing; Ottaviani, Daniela; Sefta, Meriem; Desbrousses, Celine; Chapeaublanc, Elodie; Aschero, Rosario; Sirab, Nanor; Lubieniecki, Fabiana; Lamas, Gabriela; Tonon, Laurie; Dehainault, Catherine; Hua, Clement; Freneaux, Paul; Reichman, Sacha; Karboul, Narjesse; Biton, Anne; Mirabal-Ortega, Liliana; Larcher, Magalie; Brulard, Celine; Arrufat, Sandrine; Nicolas, Andre; Elarouci, Nabila; Popova, Tatiana; Nemati, Fariba; Decaudin, Didier; Gentien, David; Baulande, Sylvain; Mariani, Odette; Dufour, Florent; Guibert, Sylvain; Vallot, Celine; Lumbroso-Le Rouic, Livia; Matet, Alexandre; Desjardins, Laurence; Pascual-Pasto, Guillem; Sunol, Mariona; Catala-Mora, Jaume; Llano, Genoveva Correa; Couturier, Jerome; Barillot, Emmanuel; Schaiquevich, Paula; Gauthier-Villars, Marion; Stoppa-Lyonnet, Dominique; Golmard, Lisa; Houdayer, Claude; Brisse, Herve; Bernard-Pierrot, Isabelle; Letouze, Eric; Viari, Alain; Saule, Simon; Sastre-Garau, Xavier; Doz, Francois; Carcaboso, Angel M.; Cassoux, Nathalie; Pouponnot, Celio; Goureau, Olivier; Chantada, Guillermo; de Reynies, Aurelien; Aerts, Isabelle; Radvanyi, Francois

Gene- and pathway-level analyses of iCOGS variants highlight novel signaling pathways underlying familial breast cancer susceptibility

INTERNATIONAL JOURNAL OF CANCER

IF4.7

2021-01-094

OAAI

Lonjou, Christine; Eon-Marchais, Severine; Truong, Therese; Dondon, Marie-Gabrielle; Karimi, Mojgan; Jiao, Yue; Damiola, Francesca; Barjhoux, Laure; Le Gal, Dorothee; Beauvallet, Juana; Mebirouk, Noura; Cavaciuti, Eve; Chiesa, Jean; Floquet, Anne; Audebert-Bellanger, Severine; Giraud, Sophie; Frebourg, Thierry; Limacher, Jean-Marc; Gladieff, Laurence; Mortemousque, Isabelle; Dreyfus, Helene; Lejeune-Dumoulin, Sophie; Lasset, Christine; Venat-Bouvet, Laurence; Bignon, Yves-Jean; Pujol, Pascal; Maugard, Christine M.; Luporsi, Elisabeth; Bonadona, Valerie; Nogues, Catherine; Berthet, Pascaline; Delnatte, Capucine; Gesta, Paul; Lortholary, Alain; Faivre, Laurence; Buecher, Bruno; Caron, Olivier; Gauthier-Villars, Marion; Coupier, Isabelle; Mazoyer, Sylvie; Monraz, Luis-Cristobal; Kondratova, Maria; Kuperstein, Inna; Guenel, Pascal; Barillot, Emmanuel; Stoppa-Lyonnet, Dominique; Andrieu, Nadine; Lesueur, Fabienne

Dynamical Boolean Modeling of Immunogenic Cell Death

FRONTIERS IN PHYSIOLOGY

IF3.4

2020-11-1214

OAAI

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

Scientific Data

IF6.9

2020-05-050

OAAI

Transcriptional Programs Define Intratumoral Heterogeneity of Ewing Sarcoma at Single-Cell Resolution

CELL REPORTS