John Parkinson - Publications, H-index & Citations

John Parkinson

hospital for sick children

62H指数

305论文数

1.8W被引数

收录论文 82

发表时间

Cell4D: a general purpose spatial stochastic simulator for cellular pathways Cell4D：一种用于细胞通路的通用空间随机模拟器

BMC Bioinformatics

IF3.3

2026-04-08

OAAI

Donny Chan; Graham L. Cromar; Billy Taj; John Parkinson

Correction: Metabolic modeling of microbial communities in the chicken ceca reveals a landscape of competition and co-operation 更正：对鸡盲肠中微生物群落的代谢建模揭示了竞争与合作格局。

Microbiome

IF12.7

2025-12-22

OAAI

Irina Utkina; Yi Fan; Benjamin P. Willing; John Parkinson

Metabolic modeling of microbial communities in the chicken ceca reveals a landscape of competition and co-operation 鸡盲肠中微生物群落代谢建模揭示了一个竞争与合作并存的格局

Microbiome

IF12.7

2025-11-27

OAAI

Irina Utkina; Yi Fan; Benjamin P. Willing; John Parkinson

Whole Genome Sequence of the gut commensal protist Tritrichomonas musculus isolated from laboratory mice 实验室小鼠肠道共生原虫Tritrichomonas musculus的全基因组序列

SCIENTIFIC DATA

IF6.9

2025-04-08

OAAI

Alves-Ferreira, Eliza V. C.; Galac, Madeline R.; Lorenzi, Hernan A.; Ho, Margaret C. W.; Tjhin, Erick T.; Popovic, Ana; Parkinson, John

Cross-kingdom-mediated detection of intestinal protozoa through NLRP6 通过NLRP6介导的跨 kingdom 检测肠道原虫

CELL HOST & MICROBE

IF18.7

2025-03-01

PREAI

Winsor, Nathaniel J.; Bayer, Giuliano; Singh, Ojas; Chan, Jeremy K.; Li, Lu Yi; Lieng, Brandon Y.; Foerster, Elisabeth; Popovic, Ana; Tsankov, Boyan K.; Maughan, Heather; Lemire, Paul; Tam, Elaine; Streutker, Catherine; Chen, Lina; Heaver, Stacey L.; Ley, Ruth E.; Parkinson, John; Montenegro-Burke, J. Rafael; Birchenough, George M. H.; Philpott, Dana J.; Girardin, Stephen E.

The protozoan commensal Tritrichomonas musculis is a natural adjuvant for mucosal IgA

JOURNAL OF EXPERIMENTAL MEDICINE

IF10.6

2024-11-13

OAAI

Cao, Eric Yixiao; Burrows, Kyle; Chiaranunt, Pailin; Popovic, Ana; Zhou, Xueyang; Xie, Cong; Thakur, Ayushi; Britton, Graham; Spindler, Matthew; Ngai, Louis; Tai, Siu Ling; Dasoveanu, Dragos Cristian; Nguyen, Albert; Faith, Jeremiah J.; Parkinson, John; Gommerman, Jennifer L.; Mortha, Arthur

The impact of gestational diabetes on functional capacity of the infant gut microbiome is modest and transient 妊娠糖尿病对婴儿肠道菌群功能的影响是适度和短暂的

GUT MICROBES

IF11

2024-05-26

OAAI

Chieu, Ryan V.; Hamilton, Katharine; Ryan, Paul M.; Copeland, Julia; Wang, Pauline W.; Retnakaran, Ravi; Guttman, David S.; Parkinson, John; Hamilton, Jill K.

Commensal protist Tritrichomonas musculus exhibits a dynamic life cycle that induces extensive remodeling of the gut microbiota

ISME JOURNAL

IF10

2024-02-05

OAAI

Popovic, Ana; Cao, Eric Y.; Han, Joanna; Nursimulu, Nirvana; Alves-Ferreira, Eliza V. C.; Burrows, Kyle; Kennard, Andrea; Alsmadi, Noor; Grigg, Michael E.; Mortha, Arthur; Parkinson, John

MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

MICROBIOME

IF12.7

2023-06-27

OAAI

Taj, Billy; Adeolu, Mobolaji; Xiong, Xuejian; Ang, Jordan; Nursimulu, Nirvana; Parkinson, John

Systematic profiling of the chicken gut microbiome reveals dietary supplementation with antibiotics alters expression of multiple microbial pathways with minimal impact on community structure

MICROBIOME

IF12.7

2022-08-15

OAAI

Zou, Angela; Nadeau, Kerry; Xiong, Xuejian; Wang, Pauline W.; Copeland, Julia K.; Lee, Jee Yeon; St Pierre, James; Ty, Maxine; Taj, Billy; Brumell, John H.; Guttman, David S.; Sharif, Shayan; Korver, Doug; Parkinson, John

Toxoplasma infection in male mice alters dopamine-sensitive behaviors and host gene expression patterns associated with neuropsychiatric disease

PLOS NEGLECTED TROPICAL DISEASES

IF3.4

2022-07-20

OAAI

Cromar, Graham L.; Epp, Jonathan R.; Popovic, Ana; Gu, Yusing; Ha, Violet; Walters, Brandon J.; Pierre, James St.; Xiong, Xuejian; Howland, John G.; Josselyn, Sheena A.; Frankland, Paul W.; Parkinson, John

Effects of therapeutic levels of dietary antibiotics on the cecal microbiome composition of broiler chickens

POULTRY SCIENCE

IF4.2

2022-06-01

OAAI

Kairmi, Seyed Hossien; Taha-Abdelaziz, Khaled; Yitbarek, Alexander; Sargolzaei, Mehdi; Spahany, Heidi; Astill, Jake; Shojadoost, Bahram; Alizadeh, Mohammadali; Kulkarni, Raveendra R.; Parkinson, John; Sharif, Shayan

Performance of distinct microbial based solutions in a Campylobacter infection challenge model in poultry

ANIMAL MICROBIOME

IF4.4

2022-01-03

OAAI

Ty, Maxine; Taha-Abdelaziz, Khaled; Demey, Vanessa; Castex, Mathieu; Sharif, Shayan; Parkinson, John

Micronutrient supplements can promote disruptive protozoan and fungal communities in the developing infant gut

NATURE COMMUNICATIONS

IF15.7

2021-11-18

OAAI

Popovic, Ana; Bourdon, Celine; Wang, Pauline W.; Guttman, David S.; Soofi, Sajid; Bhutta, Zulfiqar A.; Bandsma, Robert H. J.; Parkinson, John; Pell, Lisa G.

E.coli Nissle increases transcription of flagella assembly and formate hydrogenlyase genes in response to colitis

GUT MICROBES

IF11

2021-11-09

OAAI

Dacquay, Louis C.; Tsang, Derek; Chan, Donny; Parkinson, John; Philpott, Dana J.; McMillen, David R.

A new platform for high-throughput therapy testing on iPSC-derived lung progenitor cells from cystic fibrosis patients 用于囊性纤维化患者的iPSC衍生肺祖细胞的高通量治疗测试的新平台

STEM CELL REPORTS

IF5.1

2021-11-01

OAAI

Jiang, Jia Xin; Wellhauser, Leigh; Laselva, Onofrio; Utkina, Irina; Bozoky, Zoltan; Gunawardena, Tarini; Ngan, Zoe; Xia, Sunny; Di Paola, Michelle; Eckford, Paul D. W.; Ratjen, Felix; Moraes, Theo J.; Parkinson, John; Wong, Amy P.; Bear, Christine E.

Blindly Controlled Magnetically Actuated Capsule for Noninvasive Sampling of the Gastrointestinal Microbiome

IEEE-ASME TRANSACTIONS ON MECHATRONICS

IF7.3

2021-10-01

PREAI

Shokrollahi, Peyman; Lai, Yung P.; Rash-Ahmadi, Samrand; Stewart, Victoria; Mohammadigheisar, Mohsen; Huber, Lee-Anne; Matsuura, Naomi; Zavodni, Anna E. H.; Parkinson, John; Diller, Eric

Modeling the metabolic interplay between a parasitic worm and its bacterial endosymbiont allows the identification of novel drug targets

ELIFE

IF0

2020-08-11

OAAI

Curran, David M.; Grote, Alexandra; Nursimulu, Nirvana; Geber, Adam; Voronin, Dennis; Jones, Drew R.; Ghedin, Elodie; Parkinson, John

BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain (vol 10, pg 333, 2020)

CELL SYSTEMS

IF7.7

2020-08-01

OAAI

Pourhaghighi, Reza; Ash, Peter E. A.; Phanse, Sadhna; Goebels, Florian; Hu, Lucas Z. M.; Chen, Siwei; Zhang, Yingying; Wierbowski, Shayne D.; Boudeau, Samantha; Moutaoufik, Mohamed T.; Malty, Ramy H.; Malolepsza, Edyta; Tsafou, Kalliopi; Nathan, Aparna; Cromar, Graham; Guo, Hongbo; Al Abdullatif, Ali; Apicco, Daniel J.; Becker, Lindsay A.; Gitler, Aaron D.; Pulst, Stefan M.; Youssef, Ahmed; Hekman, Ryan; Havugimana, Pierre C.; White, Carl A.; Blum, Benjamin C.; Ratti, Antonia; Bryant, Camron D.; Parkinson, John; Lage, Kasper; Babu, Mohan; Yu, Haiyuan; Bader, Gary D.; Wolozin, Benjamin; Emili, Andrew

A transcriptomic analysis of the phylum Nematoda (vol 36, pg 1259, 2004)

NATURE GENETICS

IF31.8

2020-06-15

OAAI

Parkinson, John; Mitreva, Makedonka; Whitton, Claire; Thomson, Marian; Daub, Jennifer; Martin, John; Schmid, Ralf; Hall, Neil; Barrell, Bart; Waterston, Robert H.; McCarter, James P.; Blaxter, Mark L.

研究方向