Julia A. Bubis - Publications, H-index & Citations

Julia A. Bubis

vienna biocenter (vbc)

15H指数

39论文数

720被引数

收录论文 19

发表时间

Breaking barriers in crosslinking mass spectrometry with enhanced throughput and sensitivity using Orbitrap Astral 使用Orbitrap Astral提高通量和灵敏度，突破交联质谱的技术壁垒

Nature Communications

IF15.7

2025-11-10

OAAI

Fränze Müller; Micha J. Birklbauer; Julia Bubis; Karel Stejskal; Viktoria Dorfer; Karl Mechtler

Ultrafast metaproteomics for quantitative assessment of strain isolates and microbiomes

MICROCHEMICAL JOURNAL

IF5.1

2024-12-01

PREAI

Kazakova, Elizaveta; Ivanov, Mark; Kusainova, Tomiris; Bubis, Julia; Polivtseva, Valentina; Petrikov, Kirill; Gorshkov, Vladimir; Kjeldsen, Frank; Gorshkov, Mikhail; Delegan, Yanina; Solyanikova, Inna; Tarasova, Irina

On the utility of ultrafast MS1-only proteomics in drug target discovery studies based on thermal proteome profiling method

ANALYTICAL AND BIOANALYTICAL CHEMISTRY

IF3.8

2024-05-15

PREAI

Fedorov, Ivan I.; Bubis, Julia A.; Kazakova, Elizaveta M.; Lobas, Anna A.; Ivanov, Mark V.; Emekeeva, Daria D.; Tarasova, Irina A.; Nazarov, Alexey A.; Gorshkov, Mikhail V.

IQMMA: Efficient MS1 Intensity Extraction Pipeline Using Multiple Feature Detection Algorithms for DDA Proteomics

JOURNAL OF PROTEOME RESEARCH

IF3.6

2023-08-14

PREAI

Postoenko, Valeriy I. I.; Garibova, Leyla A. A.; Levitsky, Lev I. I.; Bubis, Julia A. A.; Gorshkov, Mikhail V. V.; Ivanov, Mark V. V.

Massive Proteogenomic Reanalysis of Publicly Available Proteomic Datasets of Human Tissues in Search for Protein Recoding via Adenosine-to-Inosine RNA Editing

JOURNAL OF PROTEOME RESEARCH

IF3.6

2023-05-09

OAAI

Levitsky, Lev I.; Ivanov, Mark V.; Goncharov, Anton O.; Kliuchnikova, Anna A.; Bubis, Julia A.; Lobas, Anna A.; Solovyeva, Elizaveta M.; Pyatnitskiy, Mikhail A.; Ovchinnikov, Ruslan K.; Kukharsky, Michail S.; Farafonova, Tatiana E.; Novikova, Svetlana E.; Zgoda, Victor G.; Tarasova, Irina A.; Gorshkov, Mikhail V.; Moshkovskii, Sergei A.

Proteomics-based scoring of cellular response to stimuli for improved characterization of signaling pathway activity

PROTEOMICS

IF3.9

2022-12-14

PREAI

Kazakova, Elizaveta M.; Solovyeva, Elizaveta M.; Levitsky, Lev I.; Bubis, Julia A.; Emekeeva, Daria D.; Antonets, Anastasia A.; Nazarov, Alexey A.; Gorshkov, Mikhail V.; Tarasova, Irina A.

DirectMS1Quant: Ultrafast Quantitative Proteomics with MS/MS- Free Mass Spectrometry

ANALYTICAL CHEMISTRY

IF6.7

2022-09-12

OAAI

Ivanov, Mark V.; Bubis, Julia A.; Gorshkov, Vladimir; Tarasova, Irina A.; Levitsky, Lev I.; Solovyeva, Elizaveta M.; Lipatova, Anastasiya V.; Kjeldsen, Frank; Gorshkov, Mikhail V.

A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics

JOURNAL OF PROTEOME RESEARCH

IF3.6

2022-05-13

OAAI

Luo, Xiyang; Bittremieux, Wout; Griss, Johannes; Deutsch, Eric W.; Sachsenberg, Timo; Levitsky, Lev, I; Ivanov, Mark, V; Bubis, Julia A.; Gabriels, Ralf; Webel, Henry; Sanchez, Aniel; Bai, Mingze; Kall, Lukas; Perez-Riverol, Yasset

Improving the Protein Inference from Bottom-Up Proteomic Data Using Identifications from MS1 Spectra

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

IF2.7

2021-04-26

PREAI

Ivanov, Mark, V; Solovyeva, Elizaveta M.; Bubis, Julia A.; Gorshkov, Mikhail, V

Boosting MS1-only Proteomics with Machine Learning Allows 2000 Protein Identifications in Single-Shot Human Proteome Analysis Using 5 min HPLC Gradient

JOURNAL OF PROTEOME RESEARCH

IF3.6

2021-03-15

OAAI

Ivanov, Mark, V; Bubis, Julia A.; Gorshkov, Vladimir; Abdrakhimov, Daniil A.; Kjeldsen, Frank; Gorshkov, Mikhail, V

PhosphoShield: Improving Trypsin Digestion of Phosphoproteins by Shielding the Negatively Charged Phosphate Moiety

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

IF2.7

2020-08-25

OAAI

Bubis, Julia A.; Gorshkov, Vladimir; Gorshkov, Mikhail, V; Kjeldsen, Frank

HUMOS: How to Understand My Orbitrap Spectrum?-An Interactive Web-Based Tool to Teach the Basics of Mass-Spectrometry-Based Proteomics

JOURNAL OF PROTEOME RESEARCH

IF3.6

2020-08-19

OAAI

Bubis, Julia A.; Gorshkov, Vladimir; Billing, Anja M.; Kjeldsen, Frank

Rpn4 and proteasome-mediated yeast resistance to ethanol includes regulation of autophagy

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

IF4.3

2020-03-10

OAAI

Bubis, Julia A.; Spasskaya, Daria S.; Gorshkov, Vladimir A.; Kjeldsen, Frank; Kofanova, Aleksandra M.; Lekanov, Dmitry S.; Gorshkov, Mikhail V.; Karpov, Vadim L.; Tarasova, Irina A.; Karpov, Dmitry S.

DirectMS1: MS/MS-Free Identification of 1000 Proteins of Cellular Proteomes in 5 Minutes

ANALYTICAL CHEMISTRY

IF6.7

2020-02-20

OAAI

Ivanov, Mark, V; Bubis, Julia A.; Gorshkov, Vladimir; Tarasova, Irina A.; Levitsky, Lev, I; Lobas, Anna A.; Solovyeva, Elizaveta M.; Pridatchenko, Marina L.; Kjeldsen, Frank; Gorshkov, Mikhail, V

Protein corona formed on silver nanoparticles in blood plasma is highly selective and resistant to physicochemical changes of the solution

ENVIRONMENTAL SCIENCE-NANO

IF5.1

2019-01-01

OAAI

Gorshkov, Vladimir; Bubis, Julia A.; Solovyeva, Elizaveta M.; Gorshkov, Mikhail V.; Kjeldsen, Frank

Scavager: A Versatile Postsearch Validation Algorithm for Shotgun Proteomics Based on Gradient Boosting

PROTEOMICS

IF3.9

2018-12-27

PREAI

Ivanov, Mark V.; Levitsky, Lev I.; Bubis, Julia A.; Gorshkov, Mikhail V.

Validation of Peptide Identification Results in Proteomics Using Amino Acid Counting

PROTEOMICS

IF3.9

2018-11-02

PREAI

Bubis, Julia A.; Levitsky, Lev I.; Ivanov, Mark V.; Gorshkov, Mikhail V.

IdentiPy: An Extensible Search Engine for Protein Identification in Shotgun Proteomics

JOURNAL OF PROTEOME RESEARCH

IF3.6

2018-04-23

PREAI

Levitsky, Lev I.; Ivanov, Mark V.; Lobas, Anna A.; Bubis, Julia A.; Tarasova, Irina A.; Solovyeva, Elizaveta M.; Pridatchenko, Marina L.; Gorshkov, Mikhail V.

MS/MS-Free Protein Identification in Complex Mixtures Using Multiple Enzymes with Complementary Specificity

JOURNAL OF PROTEOME RESEARCH

IF3.6

2017-09-28

PREAI

Ivanov, Mark V.; Tarasova, Irina A.; Levitsky, Lev I.; Solovyeva, Elizaveta M.; Pridatchenko, Marina L.; Lobas, Anna A.; Bubis, Julia A.; Gorshkov, Mikhail V.

研究方向