Long-Chen Shen - Publications, H-index & Citations

Long-Chen Shen

nanjing university of science & technology

6H指数

19论文数

159被引数

收录论文 11

发表时间

CellPredX, a computational framework for cross-data type, cross-sample, and cross-protocol cell type annotation through domain adaptation and deep metric learning CellPredX：一种通过领域自适应和深度度量学习实现跨数据类型、跨样本和跨协议细胞类型注释的计算框架

PLoS Computational Biology

IF3.6

2026-01-01

PREAI

Liu, Yan; Xia, Yu; Yan, He; Shen, Long-Chen; Zhu, Yiheng; Qiang, Ji-Peng; Wei, Guo

Genome- and Peak-Informed Two-Stage Framework for scATAC-seq Cell Type Identification

Bioinformatics

IF5.4

2025-12-27

OAAI

Yan Liu; Sheng Guan; He Yan; Long-Chen Shen; Yiheng Zhu; Ji-Peng Qiang; Guo Wei

Learning conformational flexibility of immune receptors 学习免疫受体的构象柔性

Nature Machine Intelligence

IF23.9

2025-10-16

PREAI

Long-Chen Shen; Dong-Jun Yu; Jiangning Song

Self-iterative multiple-instance learning enables the prediction of CD4+ T cell immunogenic epitopes 自迭代多实例学习可预测CD4 T细胞免疫原性表位

Nature Machine Intelligence

IF23.9

2025-07-10

OAAI

Long-Chen Shen; Yumeng Zhang; Zhikang Wang; Dene R. Littler; Yan Liu; Jinhui Tang; Jamie Rossjohn; Dong-Jun Yu; Jiangning Song

GMFGRN: a matrix factorization and graph neural network approach for gene regulatory network inference

BRIEFINGS IN BIOINFORMATICS

IF7.7

2024-01-22

OAAI

Li, Shuo; Liu, Yan; Shen, Long-Chen; Yan, He; Song, Jiangning; Yu, Dong-Jun

Integrating unsupervised language model with multi-view multiple sequence alignments for high-accuracy inter-chain contact prediction

COMPUTERS IN BIOLOGY AND MEDICINE

IF6.3

2023-11-01

OAAI

Liu, Zi; Zhu, Yi-Heng; Shen, Long-Chen; Xiao, Xuan; Qiu, Wang-Ren; Yu, Dong-Jun

TripletCell: a deep metric learning framework for accurate annotation of cell types at the single-cell level TripletCell: 一个深度度量学习框架，用于在单细胞级别准确标注细胞类型

BRIEFINGS IN BIOINFORMATICS

IF7.7

2023-04-20

PREAI

Liu, Yan; Wei, Guo; Li, Chen; Shen, Long-Chen; Gasser, Robin B.; Song, Jiangning; Chen, Dijun; Yu, Dong-Jun

Learning Cell Annotation under Multiple Reference Datasets by Multisource Domain Adaptation

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2022-12-29

PREAI

Liu, Yan; Yan, He; Shen, Long-Chen; Yu, Dong-Jun

MAResNet: predicting transcription factor binding sites by combining multi-scale bottom-up and top-down attention and residual network

BRIEFINGS IN BIOINFORMATICS

IF7.7

2021-10-19

OAAI

Han, Ke; Shen, Long-Chen; Zhu, Yi-Heng; Xu, Jian; Song, Jiangning; Yu, Dong-Jun

Improving protein fold recognition using triplet network and ensemble deep learning

BRIEFINGS IN BIOINFORMATICS

IF7.7

2021-07-05

OAAI

Liu, Yan; Han, Ke; Zhu, Yi-Heng; Zhang, Ying; Shen, Long-Chen; Song, Jiangning; Yu, Dong-Jun

SAResNet: self-attention residual network for predicting DNA-protein binding

BRIEFINGS IN BIOINFORMATICS

IF7.7

2021-04-09

OAAI

Shen, Long-Chen; Liu, Yan; Song, Jiangning; Yu, Dong-Jun

研究方向