未登录 Routine Metagenomics Service for ICU Patients with Respiratory Infection Charalampous, Themoula; Alcolea-Medina, Adela; Snell, Luke B.; Alder, Christopher; Tan, Mark; Williams, Tom G. S.; Al-Yaakoubi, Noor; Humayun, Gul; Meadows, Christopher I. S.; Wyncoll, Duncan L. A.; Paul, Richard; Hemsley, Carolyn J.; Jeyaratnam, Dakshika; Newsholme, William; Goldenberg, Simon; Patel, Amita; Tucker, Fearghal; Nebbia, Gaia; Wilks, Mark; Chand, Meera; Cliff, Penelope R.; Batra, Rahul; O'Grady, Justin; Barrett, Nicholas A.; Edgeworth, Jonathan D. 分享 收藏
The use of representative community samples to assess SARS-CoV-2 lineage competition: Alpha outcompetes Beta and wild-type in England from January to March 2021 Eales, Oliver; Page, Andrew J.; Tang, Sonja N.; Walters, Caroline E.; Wang, Haowei; Haw, David; Trotter, Alexander J.; Le Viet, Thanh; Foster-Nyarko, Ebenezer; Prosolek, Sophie; Atchison, Christina; Ashby, Deborah; Cooke, Graham; Barclay, Wendy; Donnelly, Christl A.; O'Grady, Justin; Volz, Erik; Darzi, Ara; Ward, Helen; Elliott, Paul; Riley, Steven 分享 收藏
Clinical Performance of Direct RT-PCR Testing of Raw Saliva for Detection of SARS-CoV-2 in Symptomatic and Asymptomatic Individuals Castillo-Bravo, Rosa; Lucca, Noel; Lai, Linyi; Marlborough, Killian; Brychkova, Galina; Sakhteh, Maryam Shideh; Lonergan, Charlie; O'Grady, Justin; Alikhan, Nabil-Fareed; Trotter, Alexander J.; Page, Andrew J.; Smyth, Breda; McKeown, Peter C.; Feenstra, Jelena D. M.; Ulekleiv, Camilla; Sorel, Oceane; Gandhi, Manoj; Spillane, Charles 分享 收藏
Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome Ravi, Anuradha; Troncoso-Rey, Perla; Ahn-Jarvis, Jennifer; Corbin, Kendall R.; Harris, Suzanne; Harris, Hannah; Aydin, Alp; Kay, Gemma L.; Le Viet, Thanh; Gilroy, Rachel; Pallen, Mark J.; Page, Andrew J.; O'Grady, Justin; Warren, Frederick J. 分享 收藏
Microbiomes of Urine and the Prostate Are Linked to Human Prostate Cancer Risk Groups Hurst, Rachel; Meader, Emma; Gihawi, Abraham; Rallapalli, Ghanasyam; Clark, Jeremy; Kay, Gemma L.; Webb, Martyn; Manley, Kate; Curley, Helen; Walker, Helen; Kumar, Ravi; Schmidt, Katarzyna; Crossman, Lisa; Eeles, Rosalind A.; Wedge, David C.; Lynch, Andy G.; Massie, Charlie E.; Yazbek-Hanna, Marcelino; Rochester, Mark; Mills, Robert D.; Mithen, Richard F.; Traka, Maria H.; Ball, Richard Y.; O'Grady, Justin; Brewer, Daniel S.; Wain, John; Cooper, Colin S. 分享 收藏
Clinical Metagenomic Sequencing for Species Identification and Antimicrobial Resistance Prediction in Orthopedic Device Infection Street, Teresa L.; Sanderson, Nicholas D.; Kolenda, Camille; Kavanagh, James; Pickford, Hayleah; Hoosdally, Sarah; Cregan, Jack; Taunt, Carol; Jones, Emma; Oakley, Sarah; Atkins, Bridget L.; Dudareva, Maria; McNally, Martin A.; O'Grady, Justin; Crook, Derrick W.; Eyre, David W. 分享 收藏
Multicentre evaluation of two multiplex PCR platforms for the rapid microbiological investigation of nosocomial pneumonia in UK ICUs: the INHALE WP1 study Enne, Virve, I; Aydin, Alp; Baldan, Rossella; Owen, Dewi R.; Richardson, Hollian; Ricciardi, Federico; Russell, Charlotte; Nomamiukor-Ikeji, Brenda O.; Swart, Ann-Marie; High, Juliet; Colles, Antony; Barber, Julie; Gant, Vanya; Livermore, David M.; O'Grady, Justin 分享 收藏
Genomic epidemiology and the role of international and regional travel in the SARS-CoV-2 epidemic in Zimbabwe: a retrospective study of routinely collected surveillance data Mashe, Tapfumanei; Takawira, Faustinos Tatenda; Martins, Leonardo de Oliveira; Gudza-Mugabe, Muchaneta; Chirenda, Joconiah; Munyanyi, Manes; Chaibva, Blessmore, V; Tarupiwa, Andrew; Gumbo, Hlanai; Juru, Agnes; Nyagupe, Charles; Ruhanya, Vurayai; Phiri, Isaac; Manangazira, Portia; Goredema, Alexander; Danda, Sydney; Chabata, Israel; Jonga, Janet; Munharira, Rutendo; Masunda, Kudzai; Mukeredzi, Innocent; Mangwanya, Douglas; Trotter, Alex; Le Viet, Thanh; Rudder, Steven; Kay, Gemma; Baker, David; Thilliez, Gaetan; Gutierrez, Ana Victoria; O'Grady, Justin; Hove, Maxwell; Mutapuri-Zinyowera, Sekesai; Page, Andrew J.; Kingsley, Robert A.; Mhlanga, Gibson 分享 收藏
An optimised protocol for detection of SARS-CoV-2 in stool Li, Tianqi; Garcia-Gutierrez, Enriqueta; Yara, Daniel A.; Scadden, Jacob; Davies, Jade; Hutchins, Chloe; Aydin, Alp; O'Grady, Justin; Narbad, Arjan; Romano, Stefano; Sayavedra, Lizbeth 分享 收藏
An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities 使用模拟社区研究生物信息学组件对微生物组分析的影响的实验室间研究 O'Sullivan, Denise M.; Doyle, Ronan M.; Temisak, Sasithon; Redshaw, Nicholas; Whale, Alexandra S.; Logan, Grace; Huang, Jiabin; Fischer, Nicole; Amos, Gregory C. A.; Preston, Mark D.; Marchesi, Julian R.; Wagner, Josef; Parkhill, Julian; Motro, Yair; Denise, Hubert; Finn, Robert D.; Harris, Kathryn A.; Kay, Gemma L.; O'Grady, Justin; Ransom-Jones, Emma; Wu, Huihai; Laing, Emma; Studholme, David J.; Benavente, Ernest Diez; Phelan, Jody; Clark, Taane G.; Moran-Gilad, Jacob; Huggett, Jim F. 分享 收藏
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CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes CoronaHiT: SARS-CoV-2基因组的高通量测序 Baker, Dave J.; Aydin, Alp; Le-Viet, Thanh; Kay, Gemma L.; Rudder, Steven; Martins, Leonardo de Oliveira; Tedim, Ana P.; Kolyva, Anastasia; Diaz, Maria; Alikhan, Nabil-Fareed; Meadows, Lizzie; Bell, Andrew; Gutierrez, Ana Victoria; Trotter, Alexander J.; Thomson, Nicholas M.; Gilroy, Rachel; Griffith, Luke; Adriaenssens, Evelien M.; Stanley, Rachael; Charles, Ian G.; Elumogo, Ngozi; Wain, John; Prakash, Reenesh; Meader, Emma; Mather, Alison E.; Webber, Mark A.; Dervisevic, Samir; Page, Andrew J.; O'Grady, Justin 分享 收藏
Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thomson, Nicholas M.; Jarju, Sheikh; Kwambana-Adams, Brenda A.; Secka, Arss; O'Grady, Justin; Antonio, Martin; Pallen, Mark John 分享 收藏
Genomic diversity of Escherichia coli isolates from non-human primates in the Gambia Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thilliez, Gaetan; Thomson, Nicholas M.; Baker, David; Kay, Gemma; Cramer, Jennifer D.; O'Grady, Justin; Antonio, Martin; Pallen, Mark J. 分享 收藏
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function (vol 9, giaa053, 2020) Reddington, Kate; Eccles, David; O'Grady, Justin; Drown, Devin M.; Hansen, Lars Hestbjerg; Nielsen, Tue Kjaergaard; Ducluzeau, Anne-Lise; Leggett, Richard M.; Heavens, Darren; Peel, Ned; Snutch, Terrance P.; Bayega, Anthony; Oikonomopoulos, Spyridon; Ragoussis, Jiannis; Barry, Thomas; van der Helm, Eric; Jolic, Dino; Richardson, Hollian; Jansen, Hans; Tyson, John R.; Jain, Miten; Brown, Bonnie L. 分享 收藏
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function 使用纳米孔测序对浮游河流微生物聚生体进行宏基因组分析，揭示了对河流微生物分类学和功能的见解 Reddington, Kate; Eccles, David; O'Grady, Justin; Drown, Devin M.; Hansen, Lars Hestbjerg; Nielsen, Tue Kjaergaard; Ducluzeau, Anne-Lise; Leggett, Richard M.; Heavens, Darren; Peel, Ned; Snutch, Terrance P.; Bayega, Anthony; Oikonomopoulos, Spyridon; Ragoussis, Jiannis; Barry, Thomas; van der Helm, Eric; Jolic, Dino; Richardson, Hollian; Jansen, Hans; Tyson, John R.; Jain, Miten; Brown, Bonnie L. 分享 收藏
Optimizing DNA Extraction Methods for Nanopore Sequencing of Neisseria gonorrhoeae Directly from Urine Samples Street, Teresa L.; Barker, Leanne; Sanderson, Nicholas D.; Kavanagh, James; Hoosdally, Sarah; Cole, Kevin; Newnham, Robert; Selvaratnam, Mathyruban; Andersson, Monique; Llewelyn, Martin J.; O'Grady, Justin; Crook, Derrick W.; Eyre, David W. 分享 收藏
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Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs Phelan, Jody E.; O'Sullivan, Denise M.; Machado, Diana; Ramos, Jorge; Oppong, Yaa E. A.; Campino, Susana; O'Grady, Justin; McNerney, Ruth; Hibberd, Martin L.; Viveiros, Miguel; Huggett, Jim F.; Clark, Taane G. 分享 收藏
Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection Charalampous, Themoula; Kay, Gemma L.; Richardson, Hollian; Aydin, Alp; Baldan, Rossella; Jeanes, Christopher; Rae, Duncan; Grundy, Sara; Turner, Daniel J.; Wain, John; Leggett, Richard M.; Livermore, David M.; O'Grady, Justin 分享 收藏
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