David L. Gally - Publications, H-index & Citations

David L. Gally

university college london

54H指数

202论文数

8.3K被引数

收录论文 65

发表时间

Predicting clinical outcome of Escherichia coli O157:H7 infections using explainable machine learning 利用可解释机器学习预测大肠杆菌O157:H7感染的临床结局

MICROBIAL GENOMICS

IF4

2025-12-01

PREAI

Paganini, Julian A.; Khatun, Suniya; McAteer, Sean; Cowley, Lauren; Greig, David R.; Gally, David L.; Jenkins, Claire; Dallman, Timothy J.

The type 6 secretion system immunity protein RhsFI has been repurposed for small RNA regulation in pathogenic Escherichia coli

NUCLEIC ACIDS RESEARCH

IF13.1

2025-08-12

PREAI

Zammit, Thomas; Sy, Brandon; Shchepachev, Vadim; Mediati, Daniel G.; Poudyal, Pranita; Norris, Dougall; Bang, Samuel; Alquethamy, Saleh; Wu, Winton; Ullah, Asim; McAteer, Sean; Rowell, Keiran; Michie, Katharine; Gally, David; Tollervey, David; Tree, Jai

Predictive phage therapy for Escherichia coli urinary tract infections: Cocktail selection for therapy based on machine learning models

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2024-03-13

OAAI

Keith, Marianne; de la Torriente, Alba Park; Chalka, Antonia; Vallejo-Trujillo, Adriana; Mcateer, Sean P.; Paterson, Gavin K.; Low, Alison S.; Gally, David L.

Re-analysis of an outbreak of Shiga toxin-producing Escherichia coli O157:H7 associated with raw drinking milk using Nanopore sequencing

SCIENTIFIC REPORTS

IF3.9

2024-03-09

OAAI

Greig, David R.; Do Nascimento, Vivienne; Gally, David L.; Gharbia, Saheer E.; Dallman, Timothy J.; Jenkins, Claire

Phylogenetic relationship and virulence composition of Escherichia coli O26:H11 cattle and human strain collections in Scotland; 2002-2020

FRONTIERS IN MICROBIOLOGY

IF4.5

2023-11-06

OAAI

Hoyle, Deborah V.; Wee, Bryan A.; Macleod, Kareen; Chase-Topping, Margo E.; Bease, Andrew G.; Tongue, Sue C.; Gally, David L.; Delannoy, Sabine; Fach, Patrick; Pearce, Michael C.; Gunn, George J.; Holmes, Anne; Allison, Lesley

The advantage of intergenic regions as genomic features for machine- learning- based host attribution of Salmonella Typhimurium from the USA

MICROBIAL GENOMICS

IF4

2023-10-16

OAAI

Chalka, Antonia; Dallman, Tim J.; Vohra, Prerna; Stevens, Mark P.; Gally, David L.

Analysis of Escherichia coli O157 strains in cattle and humans between Scotland and England & Wales: implications for human health

MICROBIAL GENOMICS

IF4

2023-09-06

OAAI

Chase-Topping, Margo; Dallman, Timothy J.; Allison, Lesley; Lupolova, Nadejda; Matthews, Louise; Mitchell, Sonia; Banks, Christopher J.; Prentice, Jamie; Brown, Helen; Tongue, Sue; Henry, Madeleine; Evans, Judith; Gunn, George; Hoyle, Deborah; McNeilly, Tom N.; Fitzgerald, Stephen; Smith-Palmer, Alison; Shaaban, Sharif; Holmes, Anne; Hanson, Mary; Woolhouse, Mark; Didelot, Xavier; Jenkins, Claire; Gally, David L.

Rapid metagenomic sequencing for diagnosis and antimicrobial sensitivity prediction of canine bacterial infections

MICROBIAL GENOMICS

IF4

2023-07-20

OAAI

Ring, Natalie; Low, Alison S.; Wee, Bryan; Paterson, Gavin K.; Nuttall, Tim; Gally, David; Mellanby, Richard; Fitzgerald, J. Ross

Genome structural variation in Escherichia coli O157:H7

MICROBIAL GENOMICS

IF4

2021-11-30

OAAI

Fitzgerald, Stephen F.; Lupolova, Nadejda; Shaaban, Sharif; Dallman, Timothy J.; Greig, David; Allison, Lesley; Tongue, Sue C.; Evans, Judith; Henry, Madeleine K.; McNeilly, Tom N.; Bono, James L.; Gally, David L.

Molecular epidemiology of extended-spectrum beta-lactamase-producing extra-intestinal pathogenic Escherichia coli strains over a 2-year period (2017-2019) from Zimbabwe

EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

IF3

2021-11-15

PREAI

Takawira, Faustinos Tatenda; Pitout, Johann Dd; Thilliez, Gaetan; Mashe, Tapfumanei; Gutierrez, Ana Victoria; Kingsley, Robert A.; Peirano, Gisele; Matheu, Jorge; Midzi, Stanley M.; Mwamakamba, Lusubilo W.; Gally, David L.; Tarupiwa, Andrew; Mukavhi, Leckson; Ehlers, Marthie M.; Mtapuri-Zinyowera, Sekesai; Kock, Marleen M.

Site Specific Relationships between COVID-19 Cases and SARS-CoV-2 Viral Load in Wastewater Treatment Plant Influent

ENVIRONMENTAL SCIENCE & TECHNOLOGY

IF11.3

2021-11-05

OAAI

Fitzgerald, Stephen F.; Rossi, Gianluigi; Low, Alison S.; McAteer, Sean P.; O'Keefe, Brian; Findlay, David; Cameron, Graeme J.; Pollard, Peter; Singleton, Peter T. R.; Ponton, George; Singer, Andrew C.; Farkas, Kata; Jones, Davey; Graham, David W.; Quintela-Baluja, Marcos; Tait-Burkard, Christine; Gally, David L.; Kao, Rowland; Corbishley, Alexander

Mitotic Arrest-Deficient 2 Like 2 (MAD2L2) Interacts with Escherichia coli Effector Protein EspF

LIFE-BASEL

IF3.4

2021-09-15

OAAI

Tahoun, Amin; El-Sharkawy, Hanem; Moustafa, Samar M.; Abdel-Hafez, Lina Jamil M.; Albrakati, Ashraf; Koegl, Manfred; Haas, Juergen; Mahajan, Arvind; Gally, David L.; Elmahallawy, Ehab Kotb

Temporal and nutritional effects on the weaner pig ileal microbiota

ANIMAL MICROBIOME

IF4.4

2021-08-28

OAAI

Pollock, Jolinda; Glendinning, Laura; Smith, Lesley A.; Mohsin, Hamna; Gally, David L.; Hutchings, Michael R.; Houdijk, Jos G. M.

Prevalence and Epidemiology of Non-O157 Escherichia coli Serogroups O26, O103, O111, and O145 and Shiga Toxin Gene Carriage in Scottish Cattle, 2014-2015 2014-2015苏格兰牛中Non-O157大肠杆菌血清群O26，O103，O111和O145和志贺毒素基因携带的患病率和流行病学

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2021-04-27

OAAI

Hoyle, Deborah, V; Keith, Marianne; Williamson, Helen; Macleod, Kareen; Mathie, Heather; Handel, Ian; Currie, Carol; Holmes, Anne; Allison, Lesley; McLean, Rebecca; Callaby, Rebecca; Porphyre, Thibaud; Tongue, Sue C.; Henry, Madeleine K.; Evans, Judith; Gunn, George J.; Gally, David L.; Silva, Nuno; Chase-Topping, Margo E.

Mechanisms involved in the adaptation of Escherichia coli O157:H7 to the host intestinal microenvironment

CLINICAL SCIENCE

IF7.7

2020-12-21

OAAI

Fernandez-Brando, Romina J.; McAteer, Sean P.; Montanez-Culma, Johanna; Cortes-Araya, Yennifer; Tree, Jai; Bernal, Alan; Fuentes, Federico; Fitzgerald, Stephen; Pineda, Gonzalo E.; Victoria Ramos, M.; Gally, David L.; Palermo, Marina S.

A high-throughput genomic screen identifies a role for the plasmid-borne type II secretion system of Escherichia coli O157:H7 (Sakai) in plant-microbe interactions

GENOMICS

IF3

2020-11-01

OAAI

Holmes, Ashleigh; Pritchard, Leighton; Hedley, Peter; Morris, Jenny; McAteer, Sean P.; Gally, David L.; Holden, Nicola J.

Comparison of Shiga toxin-encoding bacteriophages in highly pathogenic strains of Shiga toxin-producing Escherichia coli O157:H7 in the UK 英国产志贺毒素大肠杆菌O157:H7高致病性菌株中编码志贺毒素的噬菌体的比较

MICROBIAL GENOMICS

IF4

2020-03-01

OAAI

Yara, Daniel A.; Greig, David R.; Gally, David L.; Dallman, Timothy J.; Jenkins, Claire

Resistance to change: AMR gene dynamics on a commercial pig farm with high antimicrobial usage

SCIENTIFIC REPORTS

IF3.9

2020-02-03

OAAI

Pollock, Jolinda; Muwonge, Adrian; Hutchings, Michael R.; Mainda, Geoffrey; Bronsvoort, Barend M.; Gally, David L.; Corbishley, Alexander

A guide to machine learning for bacterial host attribution using genome sequence data

MICROBIAL GENOMICS

IF4

2019-12-01

OAAI

Lupolova, Nadejda; Lycett, Samantha J.; Gally, David L.

Shiga toxin sub-type 2a increases the efficiency of Escherichia coli O157 transmission between animals and restricts epithelial regeneration in bovine enteroids

PLOS PATHOGENS

IF4.9

2019-10-03

OAAI

Fitzgerald, Stephen F.; Beckett, Amy E.; Palarea-Albaladejo, Javier; McAteer, Sean; Shaaban, Sharif; Morgan, Jason; Ahmad, Nur Indah; Young, Rachel; Mabbott, Neil A.; Morrison, Liam; Bono, James L.; Gally, David L.; McNeilly, Tom N.

研究方向