Mahan Ghafari - Publications, H-index & Citations

Mahan Ghafari

university of oxford

16H指数

68论文数

2.3K被引数

收录论文 19

发表时间

Large-scale genomic surveillance reveals immunosuppression drives mutation dynamics in persistent SARS-CoV-2 infections 大规模基因组监测揭示免疫抑制驱动持续性SARS-CoV-2感染中的突变动态

Nature Communications

IF15.7

2026-06-19

OAAI

Mark P. Khurana; Alexandros Katsiferis; Neil Scheidwasser; Mathilde Marie Brünnich Sloth; Jacob Curran-Sebastian; Christian Morgenstern; Man-Hung Eric Tang; Jannik Fonager; Morten Rasmussen; Marc Stegger; Sune Lehmann; Charles Whittaker; Laust H. Mortensen; Pikka Jokelainen; Moritz U. G. Kraemer; Neil M. Ferguson; Mahan Ghafari; Tyra G. Krause; David A. Duchêne; Samir Bhatt

Biased estimates of phylogenetic branch lengths resulting from the discretised Gamma model of site rate heterogeneity 离散化Gamma位点速率异质性模型导致的系统发育分支长度偏差估计

Systematic Biology

IF5.7

2026-05-20

OAAI

Luca Ferretti; Tanya Golubchik; Francesco Di Lauro; Mahan Ghafari; Julian Villabona-Arenas; Katherine E Atkins; Christophe Fraser; Matthew Hall

SARS-CoV-2 genomic diversity and within-host evolution in individuals with persistent infection in the UK: an observational, longitudinal, population-based surveillance study SARS-CoV-2基因组多样性与持续感染个体中的宿主内进化：一项基于人群的观察性、纵向监测研究

The Lancet Microbe

IF0

2025-07-30

OAAI

Mahan Ghafari; Steven A Kemp; Matthew Hall; Joseph Clarke; Luca Ferretti; Laura Thomson; Ruth Studley; Ann Sarah Walker; Tanya Golubchik; Katrina Lythgoe

Revisiting the origins of the Sobemovirus genus: A case for ancient origins of plant viruses 重新审视Sobemovirus属的起源: 植物病毒的古老起源

PLOS PATHOGENS

IF4.9

2024-01-11

OAAI

Ghafari, Mahan; Somera, Merike; Sarmiento, Cecilia; Niehl, Annette; Hebrard, Eugenie; Tsoleridis, Theocharis; Ball, Jonathan; Moury, Benoit; Lemey, Philippe; Katzourakis, Aris; Fargette, Denis

A quantitative evaluation of the impact of vaccine roll-out rate and coverage on reducing deaths: insights from the first 2 years of COVID-19 epidemic in Iran

BMC MEDICINE

IF8.3

2023-11-13

OAAI

Ghafari, Mahan; Hosseinpour, Sepanta; Rezaee-Zavareh, Mohammad Saeid; Dascalu, Stefan; Rostamian, Somayeh; Aramesh, Kiarash; Madani, Kaveh; Kordasti, Shahram

Insights into SARS-CoV-2 in Angola during the COVID-19 peak: Molecular epidemiology and genome surveillance 新型冠状病毒肺炎高峰期间安哥拉SARS-CoV-2的见解: 分子流行病学和基因组监测

INFLUENZA AND OTHER RESPIRATORY VIRUSES

IF4.2

2023-09-22

OAAI

Francisco, Ngiambudulu M.; van Wyk, Stephanie; Moir, Monika; San, James Emmanuel; Sebastiao, Cruz S.; Tegally, Houriiyah; Xavier, Joicymara; Maharaj, Akhil; Neto, Zoraima; Afonso, Pedro; Jandondo, Domingos; Paixao, Joana; Miranda, Julio; David, Kumbelembe; Ingles, Luzia; Pereira, Amilton; Paulo, Agostinho; Carralero, Raisa Rivas; Freitas, Helga Reis; Mufinda, Franco; Lutucuta, Silvia; Ghafari, Mahan; Giovanetti, Marta; Giandhari, Jennifer; Pillay, Sureshnee; Naidoo, Yeshnee; Singh, Lavanya; Tshiabuila, Derek; Martin, Darren Patrick; Chabuka, Lucious; Choga, Wonderful; Wanjohi, Dorcas; Mwangi, Sarah; Pillay, Yusasha; Kebede, Yenew; Shumba, Edwin; Ondoa, Pascale; Baxter, Cheryl; Wilkinson, Eduan; Tessema, Sofonias Kifle; Katzourakis, Aris; Lessells, Richard; de Oliveira, Tulio; Morais, Joana

The evolution of SARS-CoV-2 SARS-CoV-2的演变

NATURE REVIEWS MICROBIOLOGY

IF103.3

2023-04-05

427

OAAI

Markov, Peter V.; Ghafari, Mahan; Beer, Martin; Lythgoe, Katrina; Simmonds, Peter; Stilianakis, Nikolaos I.; Katzourakis, Aris

Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models 使用基于统计和地理空间代理的模型估算英格兰的SARS-CoV-2变异适合度和干预措施的影响

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

IF3.7

2022-08-15

OAAI

Hinch, Robert; Panovska-Griffiths, Jasmina; Probert, William J. M.; Ferretti, Luca; Wymant, Chris; Di Lauro, Francesco; Baya, Nikolas; Ghafari, Mahan; Abeler-Dorner, Lucie; Fraser, Christophe

A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data

NATURE COMMUNICATIONS

IF15.7

2022-05-31

OAAI

Ghafari, Mahan; Watson, Oliver J.; Karlinsky, Ariel; Ferretti, Luca; Katzourakis, Aris

Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza 纯化选择决定了SARS-CoV-2和pH1N1流感中进化速率的短期时间依赖性

MOLECULAR BIOLOGY AND EVOLUTION

IF5.3

2022-01-17

OAAI

Ghafari, Mahan; du Plessis, Louis; Raghwani, Jayna; Bhatt, Samir; Xu, Bo; Pybus, Oliver G.; Katzourakis, Aris

Engaging Religious Institutions and Faith-Based Communities in Public Health Initiatives: A Case Study of the Romanian Orthodox Church During the COVID-19 Pandemic

FRONTIERS IN PUBLIC HEALTH

IF3.4

2021-12-16

OAAI

Dascalu, Stefan; Flammer, Patrik G.; Ghafari, Mahan; Henson, Shaun C.; Nascimento, Roger; Bonsall, Michael B.

A mechanistic evolutionary model explains the time-dependent pattern of substitution rates in viruses 机械进化模型解释了病毒中替代率的时间依赖性模式

CURRENT BIOLOGY

IF7.5

2021-11-01

OAAI

Ghafari, Mahan; Simmonds, Peter; Pybus, Oliver G.; Katzourakis, Aris

Lessons for preparedness and reasons for concern from the early COVID-19 epidemic in Iran

EPIDEMICS

IF2.4

2021-09-01

OAAI

Ghafari, Mahan; Hejazi, Bardia; Karshenas, Arman; Dascalu, Stefan; Kadvidar, Alireza; Khosravi, Mohammad A.; Abbasalipour, Maryam; Heydari, Majid; Zeinali, Sirous; Ferretti, Luca; Ledda, Alice; Katzourakis, Aris

Estimating the false-negative test probability of SARS-CoV-2 by RT-PCR

EUROSURVEILLANCE

IF7.8

2020-12-17

146

OAAI

Wikramaratna, Paul S.; Paton, Robert S.; Ghafari, Mahan; Lourenco, Jose

Inferring Transmission Bottleneck Size from Viral Sequence Data Using a Novel Haplotype Reconstruction Method

JOURNAL OF VIROLOGY

IF3.8

2020-06-16

OAAI