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C

Chaney C. Kalinich

yale school of public health
H指数:32
被引数:1.1万

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A tiled amplicon protocol for culture-free whole-genome sequencing of M. tuberculosis from clinical specimens

一种用于从临床标本中无培养全基因组测序的M. tuberculosis分片扩增协议

Journal of Clinical Microbiology
IF5.4
2026-02-010
PRE
Kalinich, Chaney C.; Gonzalez, Freddy L.; Osmaston, Alice; Breban, Mallery I.; Distefano, Isabel; Leon, Candy; Coronel, Jorge; Tan, Grace; Crudu, Valeriu; Ciobanu, Nelly; Codreanu, Alexandru; Solano, Walter; Raez, Jimena; Sheen, Patricia; Zimic, Mirko; Allicock, Orchid M.; Chaguza, Chrispin; Wyllie, Anne L.; Brandt, Matthew; Weinberger, Daniel M.; Sobkowiak, Benjamin; Cohen, Ted; Grandjean, Louis; Grubaugh, Nathan D.; Redmond, Seth N.
Global disparities in SARS-CoV-2 genomic surveillance
NATURE COMMUNICATIONS
IF15.7
2022-11-1659
OAAI
Brito, Anderson F.; Semenova, Elizaveta; Dudas, Gytis; Hassler, Gabriel W.; Kalinich, Chaney C.; Kraemer, Moritz U. G.; Ho, Joses; Tegally, Houriiyah; Githinji, George; Agoti, Charles N.; Matkin, Lucy E.; Whittaker, Charles; Howden, Benjamin P.; Sintchenko, Vitali; Zuckerman, Neta S.; Mor, Orna; Blankenship, Heather M.; de Oliveira, Tulio; Lin, Raymond T. P.; Siqueira, Marilda Mendonca; Resende, Paola Cristina; Vasconcelos, Ana Tereza R.; Spilki, Fernando R.; Aguiar, Renato Santana; Alexiev, Ivailo; Ivanov, Ivan N.; Philipova, Ivva; Carrington, Christine V. F.; Sahadeo, Nikita S. D.; Gurry, Celine; Maurer-Stroh, Sebastian; Naidoo, Dhamari; von Eije, Karin J.; Perkins, Mark D.; van Kerkhove, Maria; Hill, Sarah C.; Sabino, Ester C.; Pybus, Oliver G.; Dye, Christopher; Bhatt, Samir; Flaxman, Seth; Suchard, Marc A.; Grubaugh, Nathan D.; Baele, Guy; Faria, Nuno R.
Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques
GENOME BIOLOGY
IF9.4
2022-11-0825
OAAI
Baaijens, Jasmijn A.; Zulli, Alessandro; Ott, Isabel M.; Nika, Ioanna; van der Lugt, Mart J.; Petrone, Mary E.; Alpert, Tara; Fauver, Joseph R.; Kalinich, Chaney C.; Vogels, Chantal B. F.; Breban, Mallery, I; Duvallet, Claire; McElroy, Kyle A.; Ghaeli, Newsha; Imakaev, Maxim; Mckenzie-Bennett, Malaika F.; Robison, Keith; Plocik, Alex; Schilling, Rebecca; Pierson, Martha; Littlefield, Rebecca; Spencer, Michelle L.; Simen, Birgitte B.; Hanage, William P.; Grubaugh, Nathan D.; Peccia, Jordan; Baym, Michael
Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 variants Alpha and Iota
COMMUNICATIONS BIOLOGY
IF5.1
2022-05-117
OAAI
Petrone, Mary E.; Rothman, Jessica E.; Breban, Mallery, I; Ott, Isabel M.; Russell, Alexis; Lasek-Nesselquist, Erica; Badr, Hamada; Kelly, Kevin; Omerza, Greg; Renzette, Nicholas; Watkins, Anne E.; Kalinich, Chaney C.; Alpert, Tara; Brito, Anderson F.; Earnest, Rebecca; Tikhonova, Irina R.; Castaldi, Christopher; Kelly, John P.; Shudt, Matthew; Plitnick, Jonathan; Schneider, Erasmus; Murphy, Steven; Neal, Caleb; Laszlo, Eva; Altajar, Ahmad; Pearson, Claire; Muyombwe, Anthony; Downing, Randy; Razeq, Jafar; Niccolai, Linda; Wilson, Madeline S.; Anderson, Margaret L.; Wang, Jianhui; Liu, Chen; Hui, Pei; Mane, Shrikant; Taylor, Bradford P.; Hanage, William P.; Landry, Marie L.; Peaper, David R.; Bilguvar, Kaya; Fauver, Joseph R.; Vogels, Chantal B. F.; Gardner, Lauren M.; Pitzer, Virginia E.; St George, Kirsten; Adams, Mark D.; Grubaugh, Nathan D.
Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons
MED
IF11.8
2022-05-0151
OAAI
Chaguza, Chrispin; Coppi, Andreas; Earnest, Rebecca; Ferguson, David; Kerantzas, Nicholas; Warner, Frederick; Young, H. Patrick; Breban, Mallery, I; Billig, Kendall; Koch, Robert Tobias; Pham, Kien; Kalinich, Chaney C.; Ott, Isabel M.; Fauver, Joseph R.; Hahn, Anne M.; Tikhonova, Irina R.; Castaldi, Christopher; De Kumar, Bony; Pettker, Christian M.; Warren, Joshua L.; Weinberger, Daniel M.; Landry, Marie L.; Peaper, David R.; Schulz, Wade; Vogels, Chantal B. F.; Grubaugh, Nathan D.
Longitudinal Immune Profiling of a Severe Acute Respiratory Syndrome Coronavirus 2 Reinfection in a Solid Organ Transplant Recipient
JOURNAL OF INFECTIOUS DISEASES
IF4.5
2021-10-293
OA
Klein, Jonathan; Brito, Anderson F.; Trubin, Paul; Lu, Peiwen; Wong, Patrick; Alpert, Tara; Pena-Hernandez, Mario A.; Haynes, Winston; Kamath, Kathy; Liu, Feimei; Vogels, Chantal B. F.; Fauver, Joseph R.; Lucas, Carolina; Oh, Jieun; Mao, Tianyang; Silva, Julio; Wyllie, Anne L.; Muenker, M. Catherine; Casanovas-Massana, Arnau; Moore, Adam J.; Petrone, Mary E.; Kalinich, Chaney C.; Dela Cruz, Charles; Farhadian, Shelli; Ring, Aaron; Shon, John; Ko, Albert, I; Grubaugh, Nathan D.; Israelow, Benjamin; Iwasaki, Akiko; Azar, Marwan M.
Delayed production of neutralizing antibodies correlates with fatal COVID-19 (May, 2021, 10.1038/s41591-021-01355-0)
NATURE MEDICINE
IF50
2021-06-183
OAAI
Lucas, Carolina; Klein, Jon; Sundaram, Maria E.; Liu, Feimei; Wong, Patrick; Silva, Julio; Mao, Tianyang; Oh, Ji Eun; Mohanty, Subhasis; Huang, Jiefang; Tokuyama, Maria; Lu, Peiwen; Venkataraman, Arvind; Park, Annsea; Israelow, Benjamin; Vogels, Chantal B. F.; Muenker, M. Catherine; Chang, C-Hong; Casanovas-Massana, Arnau; Moore, Adam J.; Zell, Joseph; Fournier, John B.; Wyllie, Anne L.; Campbell, Melissa; Lee, Alfred I.; Chun, Hyung J.; Grubaugh, Nathan D.; Schulz, Wade L.; Farhadian, Shelli; Dela Cruz, Charles; Ring, Aaron M.; Shaw, Albert C.; Wisnewski, Adam V.; Yildirim, Inci; Ko, Albert I.; Omer, Saad B.; Iwasaki, Akiko
Lying in wait: the resurgence of dengue virus after the Zika epidemic in Brazil
NATURE COMMUNICATIONS
IF15.7
2021-05-1149
OAAI
Brito, Anderson Fernandes; Machado, Lais Ceschini; Oidtman, Rachel J.; Siconelli, Marcio Junio Lima; Tran, Quan Minh; Fauver, Joseph R.; de Oliveira Carvalho, Rodrigo Dias; Dezordi, Filipe Zimmer; Pereira, Mylena Ribeiro; De Castro-Jorge, Luiza Antunes; Minto, Elaine Cristina Manini; Passos, Luzia Marcia Romanholi; Kalinich, Chaney C.; Petrone, Mary E.; Allen, Emma; Espana, Guido Camargo; Huang, Angkana T.; Cummings, Derek A. T.; Baele, Guy; Oliveira Franca, Rafael Freitas; Lopes da Fonseca, Benedito Antonio; Perkins, T. Alex; Wallau, Gabriel Luz; Grubaugh, Nathan D.
Delayed production of neutralizing antibodies correlates with fatal COVID-19
NATURE MEDICINE
IF50
2021-05-05178
OAAI
Lucas, Carolina; Klein, Jon; Sundaram, Maria E.; Liu, Feimei; Wong, Patrick; Silva, Julio; Mao, Tianyang; Oh, Ji Eun; Mohanty, Subhasis; Huang, Jiefang; Tokuyama, Maria; Lu, Peiwen; Venkataraman, Arvind; Park, Annsea; Israelow, Benjamin; Vogels, Chantal B. F.; Muenker, M. Catherine; Chang, C-Hong; Casanovas-Massana, Arnau; Moore, Adam J.; Zell, Joseph; Fournier, John B.; Obaid, Abeer; Robertson, Alexander James; Lu-Culligan, Alice; Zhao, Alice; Nelson, Allison; Brito, Anderson; Nunez, Angela; Martin, Anjelica; Watkins, Anne E.; Geng, Bertie; Chun, Caitlin J.; Kalinich, Chaney C.; Harden, Christina A.; Todeasa, Codruta; Jensen, Cole; Dorgay, Coriann E.; Kim, Daniel; McDonald, David; Shepard, Denise; Courchaine, Edward; White, Elizabeth B.; Song, Eric; Silva, Erin; Kudo, Eriko; DeIuliis, Giuseppe; Rahming, Harold; Park, Hong-Jai; Matos, Irene; Ott, Isabel; Nouws, Jessica; Valdez, Jordan; Fauver, Joseph; Lim, Joseph; Rose, Kadi-Ann; Anastasio, Kelly; Brower, Kristina; Glick, Laura; Sharma, Lokesh; Sewanan, Lorenzo; Knaggs, Lynda; Minasyan, Maksym; Batsu, Maria; Petrone, Mary; Kuang, Maxine; Nakahata, Maura; Linehan, Melissa; Askenase, Michael H.; Simonov, Michael; Smolgovsky, Mikhail; Balkcom, Natasha C.; Sonnert, Nicole; Naushad, Nida; Vijayakumar, Pavithra; Martinello, Rick; Datta, Rupak; Handoko, Ryan; Bermejo, Santos; Prophet, Sarah; Bickerton, Sean; Velazquez, Sofia; Alpert, Tara; Rice, Tyler; Khoury-Hanold, William; Peng, Xiaohua; Yang, Yexin; Cao, Yiyun; Strong, Yvette; Lin, Zitong; Wyllie, Anne L.; Campbell, Melissa; Lee, Alfred; Chun, Hyung J.; Grubaugh, Nathan D.; Schulz, Wade L.; Farhadian, Shelli; Dela Cruz, Charles; Ring, Aaron M.; Shaw, Albert C.; Wisnewski, Adam V.; Yildirim, Inci; Ko, Albert I.; Omer, Saad; Iwasaki, Akiko
Stability of SARS-CoV-2 RNA in Nonsupplemented Saliva
EMERGING INFECTIOUS DISEASES
IF6.6
2021-04-0150
OAAI
Ott, Isabel M.; Strine, Madison S.; Watkins, Anne E.; Boot, Maikel; Kalinich, Chaney C.; Harden, Christina A.; Vogels, Chantal B. F.; Casanovas-Massana, Arnau; Moore, Adam J.; Muenker, M. Catherine; Nakahata, Maura; Tokuyama, Maria; Nelson, Allison; Fournier, John; Bermejo, Santos; Campbell, Melissa; Datta, Rupak; Dela Cruz, Charles S.; Farhadian, Shelli F.; Ko, Albert, I; Iwasaki, Akiko; Grubaugh, Nathan D.; Wilen, Craig B.; Wyllie, Anne L.
Saliva Direct: A simplified and flexible platform to enhance SARS-CoV-2 testing capacity
MED
IF11.8
2021-03-01202
OAAI
Vogels, Chantal B. F.; Watkins, Anne E.; Harden, Christina A.; Brackney, Doug E.; Shafer, Jared; Wang, Jianhui; Caraballo, Cesar; Kalinich, Chaney C.; Ott, Isabel M.; Fauver, Joseph R.; Kudo, Eriko; Lu, Peiwen; Venkataraman, Arvind; Tokuyama, Maria; Moore, Adam J.; Muenker, M. Catherine; Casanovas-Massana, Arnau; Fournier, John; Bermejo, Santos; Campbell, Melissa; Datta, Rupak; Nelson, Allison; Dela Cruz, Charles S.; Ko, Albert, I; Iwasaki, Akiko; Krumholz, Harlan M.; Matheus, J. D.; Hui, Pei; Liu, Chen; Farhadian, Shelli F.; Sikka, Robby; Wyllie, Anne L.; Grubaugh, Nathan D.
Saliva or Nasopharyngeal Swab Specimens for Detection of SARS-CoV-2
NEW ENGLAND JOURNAL OF MEDICINE
IF78.5
2020-09-24661
OAAI
Wyllie, Anne L.; Fournier, John; Casanovas-Massana, Arnau; Campbell, Melissa; Tokuyama, Maria; Vijayakumar, Pavithra; Warren, Joshua L.; Geng, Bertie; Muenker, M. Catherine; Moore, Adam J.; Vogels, Chantal B. F.; Petrone, Mary E.; Ott, Isabel M.; Lu, Peiwen; Venkataraman, Arvind; Lu-Culligan, Alice; Klein, Jonathan; Earnest, Rebecca; Simonov, Michael; Datta, Rupak; Handoko, Ryan; Naushad, Nida; Sewanan, Lorenzo R.; Valdez, Jordan; White, Elizabeth B.; Lapidus, Sarah; Kalinich, Chaney C.; Jiang, Xiaodong; Kim, Daniel J.; Kudo, Eriko; Linehan, Melissa; Mao, Tianyang; Moriyama, Miyu; Oh, Ji E.; Park, Annsea; Silva, Julio; Song, Eric; Takahashi, Takehiro; Taura, Manabu; Weizman, Orr-El; Wong, Patrick; Yang, Yexin; Bermejo, Santos; Odio, Camila D.; Omer, Saad B.; Dela Cruz, Charles S.; Farhadian, Shelli; Martinello, Richard A.; Iwasaki, Akiko; Grubaugh, Nathan D.; Ko, Albert I.
Analytical sensitivity and efficiency comparisons of SARS-CoV-2 RT–qPCR primer–probe sets

SARS-CoV-2 rt-qpcr引物-探针组的分析灵敏度和效率比较

Nature Microbiology
IF19.4
2020-07-100
PREAI
Chantal B. F. Vogels; Anderson F. Brito; Anne L. Wyllie; Joseph R. Fauver; Isabel M. Ott; Chaney C. Kalinich; Mary E. Petrone; Arnau Casanovas-Massana; M. Catherine Muenker; Adam J. Moore; Jonathan Klein; Peiwen Lu; Alice Lu-Culligan; Xiaodong Jiang; Daniel J. Kim; Eriko Kudo; Tianyang Mao; Miyu Moriyama; Ji Eun Oh; Annsea Park; Julio Silva; Eric Song; Takehiro Takahashi; Manabu Taura; Maria Tokuyama; Arvind Venkataraman; Orr-El Weizman; Patrick Wong; Yexin Yang; Nagarjuna R. Cheemarla; Elizabeth B. White; Sarah Lapidus; Rebecca Earnest; Bertie Geng; Pavithra Vijayakumar; Camila Odio; John Fournier; Santos Bermejo; Shelli Farhadian; Charles S. Dela Cruz; Akiko Iwasaki; Albert I. Ko; Marie L. Landry; Ellen F. Foxman; Nathan D. Grubaugh

研究方向

暂未获取到该数据
N
Nathan D. Grubaugh
H 指数:73论文数:315被引数:2.5万
C
Chantal B. F. Vogels
H 指数:54论文数:181被引数:1.5万
J
Joseph R. Fauver
H 指数:40论文数:103被引数:9,856
I
Isabel M. Ott
H 指数:35论文数:81被引数:1.3万
A
Anne L. Wyllie
H 指数:42论文数:178被引数:1.2万
A
Arnau Casanovas‐Massana
H 指数:38论文数:91被引数:1.2万
M
Mary E. Petrone
H 指数:33论文数:96被引数:1.1万
A
Akiko Iwasaki
H 指数:124论文数:619被引数:7.5万
M
M. Catherine Muenker
H 指数:26论文数:56被引数:8,820
P
Peiwen Lu
H 指数:34论文数:93被引数:1.2万