未登录 Expression Atlas in 2026: enabling FAIR and open expression data through community collaboration and integration Expression Atlas在2026年：通过社区协作和整合实现FAIR和开放的表达数据 Madrigal, Pedro; Thanki, Anil S.; Fexova, Silvie; Yu, Iris D.; Chatzigeorgiou, Arsenios; Zucchi, Ida; Marugan Calles, Jose C.; Vilmovsky, Liora; Khen, Amnon; Zhao, Lingyun; Erdos, Karoly; Kurri, Sandeep R.; Selvakumar, Sandeep; Kumbham, Upendra; Prakash, Ananth; Wang, Shengbo; Green, Andrew; Ribas, Carlos Eduardo; Sweeney, Blake; Alegbe, Tobi; Suveges, Daniel; Hemrom, Anmol; Gomez Gutierrez, David E.; Insua, Santiago; Jeffryes, Matt; Pearce, Matt; Basutkar, Prasad; Kaforou, Myrsini; Cunnington, Aubrey; Levin, Michael; Kumari, Sunita; Ware, Doreen; Goutte-Gattat, Damien; Roper, Katja; Brown, Nicholas H.; Hu, Yanhui; Perrimon, Norbert; Papatheodorou, Irene; Brazma, Alvis; Hermjakob, Henning; Harrison, Melissa; Ocana, David; Ochoa, David; McDonagh, Ellen M.; Bateman, Alex; Keane, Thomas; Vizcaino, Juan Antonio; Ernst, Christina 分享 收藏
MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data Sarfraz, Irzam; Wang, Yichen; Shastry, Amulya; Teh, Wei Kheng; Sokolov, Artem; Herb, Brian R.; Creasy, Heather H.; Virshup, Isaac; Dries, Ruben; Degatano, Kylee; Mahurkar, Anup; Schnell, Daniel J.; Madrigal, Pedro; Hilton, Jason; Gehlenborg, Nils; Tickle, Timothy; Campbell, Joshua D. 分享 收藏
Expression Atlas update: insights from sequencing data at both bulk and single cell level 表达图谱更新: 来自批量和单细胞水平的测序数据的见解 George, Nancy; Fexova, Silvie; Fuentes, Alfonso Munoz; Madrigal, Pedro; Bi, Yalan; Iqbal, Haider; Kumbham, Upendra; Nolte, Nadja Francesca; Zhao, Lingyun; Thanki, Anil S.; Yu, Iris D.; Marugan Calles, Jose C.; Erdos, Karoly; Vilmovsky, Liora; Kurri, Sandeep R.; Vathrakokoili-Pournara, Anna; Osumi-Sutherland, David; Prakash, Ananth; Wang, Shengbo; Tello-Ruiz, Marcela K.; Kumari, Sunita; Ware, Doreen; Goutte-Gattat, Damien; Hu, Yanhui; Brown, Nick; Perrimon, Norbert; Vizcaino, Juan Antonio; Burdett, Tony; Teichmann, Sarah; Brazma, Alvis; Papatheodorou, Irene 分享 收藏
Mannose metabolism inhibition sensitizes acute myeloid leukaemia cells to therapy by driving ferroptotic cell death Woodley, Keith; Dillingh, Laura S.; Giotopoulos, George; Madrigal, Pedro; Rattigan, Kevin M.; Philippe, Celine; Dembitz, Vilma; Magee, Aoife M. S.; Asby, Ryan; van de Lagemaat, Louie N.; Mapperley, Christopher; James, Sophie C.; Prehn, Jochen H. M.; Tzelepis, Konstantinos; Rouault-Pierre, Kevin; Vassiliou, George S.; Kranc, Kamil R.; Helgason, G. Vignir; Huntly, Brian J. P.; Gallipoli, Paolo 分享 收藏
Epigenetic and transcriptional regulations prime cell fate before division during human pluripotent stem cell differentiation Madrigal, Pedro; Deng, Siwei; Feng, Yuliang; Militi, Stefania; Goh, Kim Jee; Nibhani, Reshma; Grandy, Rodrigo; Osnato, Anna; Ortmann, Daniel; Brown, Stephanie; Pauklin, Siim 分享 收藏
The Maleth program: Malta's first space mission discoveries on the microbiome of diabetic foot ulcers Gatt, Christine; Tierney, Braden T.; Madrigal, Pedro; Mason, Christopher E.; Beheshti, Afshin; Telzerow, Anja; Benes, Vladimir; Zahra, Graziella; Bonett, Jurgen; Cassar, Kevin; Borg, Joseph 分享 收藏
Challenges and considerations for single-cell and spatially resolved transcriptomics sample collection during spaceflight Overbey, Eliah G.; Das, Saswati; Cope, Henry; Madrigal, Pedro; Andrusivova, Zaneta; Frapard, Solene; Klotz, Rebecca; Bezdan, Daniela; Gupta, Anjali; Scott, Ryan T.; Park, Jiwoon; Chirko, Dawn; Galazka, Jonathan M.; Costes, Sylvain, V; Mason, Christopher E.; Herranz, Raul; Szewczyk, Nathaniel J.; Borg, Joseph; Giacomello, Stefania 分享 收藏
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Mutational synergy during leukemia induction remodels chromatin accessibility, histone modifications and three-dimensional DNA topology to alter gene expression Yun, Haiyang; Narayan, Nisha; Vohra, Shabana; Giotopoulos, George; Mupo, Annalisa; Madrigal, Pedro; Sasca, Daniel; Lara-Astiaso, David; Horton, Sarah J.; Agrawal-Singh, Shuchi; Meduri, Eshwar; Basheer, Faisal; Marando, Ludovica; Gozdecka, Malgorzata; Dovey, Oliver M.; Castillo-Venzor, Aracely; Wang, Xiaonan; Gallipoli, Paolo; Muller-Tidow, Carsten; Osborne, Cameron S.; Vassiliou, George S.; Huntly, Brian J. P. 分享 收藏
Modeling HNF1B-associated monogenic diabetes using human iPSCs reveals an early stage impairment of the pancreatic developmental program 使用人类ipsc对单基因糖尿病HNF1B-associated建模揭示了胰腺发育计划的早期损害 El-Khairi, Ranna; Olszanowski, Evelyn; Muraro, Daniele; Madrigal, Pedro; Tilgner, Katarzyna; Chhatriwala, Mariya; Vyas, Sapna; Chia, Crystal Y.; Vallier, Ludovic; Rodriguez-Segui, Santiago A. 分享 收藏
Revamping Space-omics in Europe Madrigal, Pedro; Gabel, Alexander; Villacampa, Alicia; Manzano, Aranzazu; Deane, Colleen S.; Bezdan, Daniela; Carnero-Diaz, Eugenie; Javier Medina, F.; Hardiman, Gary; Grosse, Ivo; Szewczyk, Nathaniel; Weging, Silvio; Giacomello, Stefania; Harridge, Stephen D. R.; Morris-Paterson, Tessa; Cahill, Thomas; da Silveira, Willian A.; Herranz, Raul 分享 收藏
Functional Divergence of the Arabidopsis Florigen-Interacting bZIP Transcription Factors FD and FDP 拟南芥与成花素相互作用的bZIP转录因子FD和FDP的功能差异 Romera-Branchat, Maida; Severing, Edouard; Pocard, Chloe; Ohr, Hyonhwa; Vincent, Coral; Nee, Guillaume; Martinez-Gallegos, Rafael; Jang, Seonghoe; Lalaguna, Fernando Andres; Madrigal, Pedro; Coupland, George 分享 收藏
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (vol 11, 810, 2020) Cuomo, Anna S. E.; Seaton, Daniel D.; McCarthy, Davis J.; Martinez, Iker; Bonder, Marc Jan; Garcia-Bernardo, Jose; Amatya, Shradha; Madrigal, Pedro; Isaacson, Abigail; Buettner, Florian; Knights, Andrew; Natarajan, Kedar Nath; Vallier, Ludovic; Marioni, John C.; Chhatriwala, Mariya; Stegle, Oliver 分享 收藏
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression 分化iPS细胞的单细胞RNA测序揭示了对基因表达的动态遗传效应 Cuomo, Anna S. E.; Seaton, Daniel D.; McCarthy, Davis J.; Martinez, Iker; Bonder, Marc Jan; Garcia-Bernardo, Jose; Amatya, Shradha; Madrigal, Pedro; Isaacson, Abigail; Buettner, Florian; Knights, Andrew; Natarajan, Kedar Nath; Vallier, Ludovic; Marioni, John C.; Chhatriwala, Mariya; Stegle, Oliver 分享 收藏
GATA6 Cooperates with EOMES/SMAD2/3 to Deploy the Gene Regulatory Network Governing Human Definitive Endoderm and Pancreas Formation GATA6与EOMES/SMAD2/3合作部署控制人类定形内胚层和胰腺形成的基因调控网络 Chia, Crystal Y.; Madrigal, Pedro; Denil, Simon L. I. J.; Martinez, Iker; Garcia-Bernardo, Jose; El-Khairi, Ranna; Chhatriwala, Mariya; Shepherd, Maggie H.; Hattersley, Andrew T.; Dunn, N. Ray; Vallier, Ludovic 分享 收藏
hiPSC hepatocyte model demonstrates the role of unfolded protein response and inflammatory networks in α1-antitrypsin deficiency hiPSC肝细胞模型证明了未折叠蛋白反应和炎症网络在 α1-抗胰蛋白酶缺乏症中的作用 Segeritz, Charis-Patricia; Rashid, Sheikh Tamir; de Brito, Miguel Cardoso; Serra, Maria Paola; Ordonez, Adriana; Morell, Carola Maria; Kaserman, Joseph E.; Madrigal, Pedro; Hannan, Nicholas R. F.; Gatto, Laurent; Tan, Lu; Wilson, Andrew A.; Lilley, Kathryn; Marciniak, Stefan J.; Gooptu, Bibek; Lomas, David A.; Vallier, Ludovic 分享 收藏
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Reconstruction of the mouse extrahepatic biliary tree using primary human extrahepatic cholangiocyte organoids Sampaziotis, Fotios; Justin, Alexander W.; Tysoe, Olivia C.; Sawiak, Stephen; Godfrey, Edmund M.; Upponi, Sara S.; Gieseck, Richard L., III; de Brito, Miguel Cardoso; Berntsen, Natalie Lie; Gomez-Vazquez, Maria J.; Ortmann, Daniel; Yiangou, Loukia; Ross, Alexander; Bargehr, Johannes; Bertero, Alessandro; Zonneveld, Marielle C. F.; Pedersen, Marianne T.; Pawlowski, Matthias; Valestrand, Laura; Madrigal, Pedro; Georgakopoulos, Nikitas; Pirmadjid, Negar; Skeldon, Gregor M.; Casey, John; Shu, Wenmiao; Materek, Paulina M.; Snijders, Kirsten E.; Brown, Stephanie E.; Rimland, Casey A.; Simonic, Ingrid; Davies, Susan E.; Jensen, Kim B.; Zilbauer, Matthias; Gelson, William T. H.; Alexander, Graeme J.; Sinha, Sanjay; Hannan, Nicholas R. F.; Wynn, Thomas A.; Karlsen, Tom H.; Melum, Espen; Markaki, Athina E.; Saeb-Parsy, Kourosh; Vallier, Ludovic 分享 收藏
A survey of best practices for RNA-seq data analysis (vol 17, 13, 2016) Conesa, Ana; Madrigal, Pedro; Tarazona, Sonia; Gomez-Cabrero, David; Cervera, Alejandra; McPherson, Andrew; Szczesniak, Michal Wojciech; Gaffney, Daniel J.; Elo, Laura L.; Zhang, Xuegong; Mortazavi, Ali 分享 收藏
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