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L Pennacchio

lawrence berkeley national laboratory

92H指数
657论文数
4.4W被引数
收录论文 114
发表时间
3D epigenome of glial cell types in developing human cortex发育中人类皮质胶质细胞类型的3D表观基因组
errNature
IF48.5
err2026-09-02
err0
errOAAI
errIan R. Jones; Li Wang; Michael Kosicki; Stephanie L. Battle; Vivek JJ Narayan; Qiuli Bi; Kaila Gemenes; Yuxi Liu; Lingbo Zhou; Mengyi Song; Matthew White; Wendy Olson; Gabriel Beuchat; Diane Dickel; Yun Li; Len A. Pennacchio; R. David Hawkins; Arnold Kriegstein; Yin Shen
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Multiomics and deep learning dissect regulatory syntax in human development多组学和深度学习解析人类发育中的调控语法
errNature
IF48.5
err2026-04-08
err0
errOAAI
errBetty B. Liu; Selin Jessa; Samuel H. Kim; Yan Ting Ng; Soon Il Higashino; Georgi K. Marinov; Derek C. Chen; Benjamin E. Parks; Li Li; Tri C. Nguyen; Austin T. Wang; Sean K. Wang; Meng How Tan; Serena Y. Tan; Michael Kosicki; Len A. Pennacchio; Eyal Ben-David; Anca M. Pasca; Anshul Kundaje; Kyle K. H. Farh; William J. Greenleaf
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Enhancers that direct gene expression to central nervous system vascular endothelial cells in vivo在体内指导基因表达至中枢神经系统血管内皮细胞的增强子
errNeuron
IF15
err2026-03-30
err0
errOAAI
errZhongming Li; Amir Rattner; Yanshu Wang; Philip M. Smallwood; Mark Sabbagh; Brandon J. Mannion; Len A. Pennacchio; Jeremy Nathans
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An expanded registry of candidate cis-regulatory elements候选顺式调控元件的扩展登记册
errNature
IF48.5
err2026-01-07
err0
errOAAI
errJill E. Moore; Henry E. Pratt; Kaili Fan; Nishigandha Phalke; Jonathan Fisher; Shaimae I. Elhajjajy; Gregory Andrews; Mingshi Gao; Nicole Shedd; Yu Fu; Matthew C. Lacadie; Jair Meza; Mansi Khandpekar; Mohit Ganna; Eva Choudhury; Ross Swofford; Huong Phan; Christian C. Ramirez; Maxwell Campbell; Mary Likhite; Nina P. Farrell; Annika K. Weimer; Anusri Pampari; Vivekanandan Ramalingam; Fairlie Reese; Beatrice Borsari; Xuezhu Yu; Eve Wattenberg; Marina Ruiz-Romero; Milad Razavi-Mohseni; Jinrui Xu; Timur Galeev; Andres Colubri; Michael A. Beer; Roderic Guigó; Mark B. Gerstein; Jesse M. Engreitz; Mats Ljungman; Timothy E. Reddy; Michael P. Snyder; Charles B. Epstein; Elizabeth Gaskell; Bradley E. Bernstein; Diane E. Dickel; Axel Visel; Len A. Pennacchio; Ali Mortazavi; Anshul Kundaje; Zhiping Weng
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SOX2-driven enhancer landscape defines the transcriptional architecture of retinogenesisSOX2驱动的增强子景观定义了视网膜发生的转录架构
err2025-12-01
err0
errOAAI
errBian, Fuyun; Golestaneh, Kimiasadat; Davis, Emily; Khan, Abdullah; Nicholson, Brendan; Daghsni, Marwa; Flohr, Keevon; Liu, Silvia; da Silva, Susana; Pennacchio, Len; Aldiri, Issam
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Uncovering hidden enhancers through unbiased in vivo testing通过无偏见体内测试揭示隐藏的增强子
err2025-08-08
err0
errOAAI
errBrandon J. Mannion; Stella Tran; Ingrid Plajzer-Frick; Catherine S. Novak; Veena Afzal; Jennifer A. Akiyama; Ismael Sospedra-Arrufat; Sarah Barton; Erik Beckman; Tyler H. Garvin; Patrick Godfrey; Janeth Godoy; Riana D. Hunter; Momoe Kato; Michael Kosicki; Anne N. Kronshage; Elizabeth A. Lee; Eman M. Meky; Quan T. Pham; Kianna von Maydell; Yiwen Zhu; Javier Lopez-Rios; Diane E. Dickel; Marco Osterwalder; Axel Visel; Len A. Pennacchio
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Range extender mediates long-distance enhancer activity范围扩展器介导长距离增强器活动
errNature
IF48.5
err2025-07-02
err0
errOAAI
errGrace Bower; Ethan W. Hollingsworth; Sandra H. Jacinto; Joshua A. Alcantara; Benjamin Clock; Kaitlyn Cao; Mandy Liu; Adam Dziulko; Ana Alcaina-Caro; Qianlan Xu; Dorota Skowronska-Krawczyk; Javier Lopez-Rios; Diane E. Dickel; Anaïs F. Bardet; Len A. Pennacchio; Axel Visel; Evgeny Z. Kvon
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Massively parallel reporter assays and mouse transgenic assays provide correlated and complementary information about neuronal enhancer activity大规模并行报告者分析和小鼠转基因分析提供了关于神经元增强子活性的相关且互补的信息
err2025-05-23
err0
errOAAI
errKosicki, Michael; Cintron, Dianne Laboy; Keukeleire, Pia; Schubach, Max; Page, Nicholas F.; Georgakopoulos-Soares, Ilias; Akiyama, Jennifer A.; Plajzer-Frick, Ingrid; Novak, Catherine S.; Kato, Momoe; Hunter, Riana D.; von Maydell, Kianna; Barton, Sarah; Godfrey, Patrick; Beckman, Erik; Sanders, Stephan J.; Kircher, Martin; Pennacchio, Len A.; Ahituv, Nadav
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Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues
err2024-12-16
err0
errOAAI
errYu, Miao; Zemke, Nathan R.; Chen, Ziyin; Juric, Ivan; Hu, Rong; Raviram, Ramya; Abnousi, Armen; Fang, Rongxin; Zhang, Yanxiao; Gorkin, David U.; Li, Yang E.; Zhao, Yuan; Lee, Lindsay; Mishra, Shreya; Schmitt, Anthony D.; Qiu, Yunjiang; Dickel, Diane E.; Visel, Axel; Pennacchio, Len A.; Hu, Ming; Ren, Bing
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VISTA Enhancer browser: an updated database of tissue-specific developmental enhancersVISTA Enhancer browser: 组织特异性发育增强剂的更新数据库
err2024-10-29
err1
errOAAI
errKosicki, Michael; Baltoumas, Fotis A.; Kelman, Guy; Boverhof, Joshua; Ong, Yeongshnn; Cook, Laura E.; Dickel, Diane E.; Pavlopoulos, Georgios A.; Pennacchio, Len A.; Visel, Axel
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A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival
err2024-10-10
err0
errOAAI
errAbassah-Oppong, Samuel; Zoia, Matteo; Mannion, Brandon J.; Rouco, Raquel; Tissieres, Virginie; Spurrell, Cailyn H.; Roland, Virginia; Darbellay, Fabrice; Itum, Anja; Gamart, Julie; Festa-Daroux, Tabitha A.; Sullivan, Carly S.; Kosicki, Michael; Rodriguez-Carballo, Eddie; Fukuda-Yuzawa, Yoko; Hunter, Riana D.; Novak, Catherine S.; Plajzer-Frick, Ingrid; Tran, Stella; Akiyama, Jennifer A.; Dickel, Diane E.; Lopez-Rios, Javier; Barozzi, Iros; Andrey, Guillaume; Visel, Axel; Pennacchio, Len A.; Cobb, John; Osterwalder, Marco
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A cell type-aware framework for nominating non-coding variants in Mendelian regulatory disorders
err2024-09-27
err0
errOAAI
errLee, Arthur S.; Ayers, Lauren J.; Kosicki, Michael; Chan, Wai-Man; Fozo, Lydia N.; Pratt, Brandon M.; Collins, Thomas E.; Zhao, Boxun; Rose, Matthew F.; Sanchis-Juan, Alba; Fu, Jack M.; Wong, Isaac; Zhao, Xuefang; Tenney, Alan P.; Lee, Cassia; Laricchia, Kristen M.; Barry, Brenda J.; Bradford, Victoria R.; Jurgens, Julie A.; England, Eleina M.; Lek, Monkol; Macarthur, Daniel G.; Lee, Eunjung Alice; Talkowski, Michael E.; Brand, Harrison; Pennacchio, Len A.; Engle, Elizabeth C.
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Nr2f1 enhancers have distinct functions in controlling Nr2f1 expression during cortical development
err2024-09-23
err0
errOAAI
errLiu, Zhidong; Ypsilanti, Athena R.; Papadimitriou, Eirene Markenscoff-; Dickel, Diane E.; Sanders, Stephan J.; Dong, Shan; Pennacchio, Len A.; Visel, Axel; Rubenstein, John L.
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Rare variation in non-coding regions with evolutionary signatures contributes to autism spectrum disorder risk
err2024-08-01
err4
errOAAI
errShin, Taehwan; Song, Janet H. T.; Kosicki, Michael; Kenny, Connor; Beck, Samantha G.; Kelley, Lily; Antony, Irene; Qian, Xuyu; Bonacina, Julieta; Papandile, Frances; Gonzalez, Dilenny; Scotellaro, Julia; Bushinsky, Evan M.; Andersen, Rebecca E.; Maury, Eduardo; Pennacchio, Len A.; Doan, Ryan N.; Walsh, Christopher A.
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Increased enhancer-promoter interactions during developmental enhancer activation in mammals
err2024-03-20
err9
errOAAI
errChen, Zhuoxin; Snetkova, Valentina; Bower, Grace; Jacinto, Sandra; Clock, Benjamin; Dizehchi, Atrin; Barozzi, Iros; Mannion, Brandon J.; Alcaina-Caro, Ana; Lopez-Rios, Javier; Dickel, Diane E.; Visel, Axel; Pennacchio, Len A.; Kvon, Evgeny Z.
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Dynamic enhancer landscapes in human craniofacial development
err2024-03-06
err2
errOAAI
errRajderkar, Sudha Sunil; Paraiso, Kitt; Amaral, Maria Luisa; Kosicki, Michael; Cook, Laura E.; Darbellay, Fabrice; Spurrell, Cailyn H.; Osterwalder, Marco; Zhu, Yiwen; Wu, Han; Afzal, Sarah Yasmeen; Blow, Matthew J.; Kelman, Guy; Barozzi, Iros; Fukuda-Yuzawa, Yoko; Akiyama, Jennifer A.; Afzal, Veena; Tran, Stella; Plajzer-Frick, Ingrid; Novak, Catherine S.; Kato, Momoe; Hunter, Riana D.; von Maydell, Kianna; Wang, Allen; Lin, Lin; Preissl, Sebastian; Lisgo, Steven; Ren, Bing; Dickel, Diane E.; Pennacchio, Len A.; Visel, Axel
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Noncoding variants alter GATA2 expression in rhombomere 4 motor neurons and cause dominant hereditary congenital facial paresis
err2023-06-29
err7
errOAAI
errTenney, Alan P.; Di Gioia, Silvio Alessandro; Webb, Bryn D.; Chan, Wai-Man; de Boer, Elke; Garnai, Sarah J.; Barry, Brenda J.; Ray, Tammy; Kosicki, Michael; Robson, Caroline D.; Zhang, Zhongyang; Collins, Thomas E.; Gelber, Alon; Pratt, Brandon M.; Fujiwara, Yuko; Varshney, Arushi; Lek, Monkol; Warburton, Peter E.; Van Ryzin, Carol; Lehky, Tanya J.; Zalewski, Christopher; King, Kelly A.; Brewer, Carmen C.; Thurm, Audrey; Snow, Joseph; Facio, Flavia M.; Narisu, Narisu; Bonnycastle, Lori L.; Swift, Amy; Chines, Peter S.; Bell, Jessica L.; Mohan, Suresh; Whitman, Mary C.; Staffieri, Sandra E.; Elder, James E.; Demer, Joseph L.; Torres, Alcy; Rachid, Elza; Al-Haddad, Christiane; Boustany, Rose-Mary; Mackey, David A.; Brady, Angela F.; Fenollar-Cortes, Maria; Fradin, Melanie; Kleefstra, Tjitske; Padberg, George W.; Raskin, Salmo; Sato, Mario Teruo; Orkin, Stuart H.; Parker, Stephen C. J.; Hadlock, Tessa A.; Vissers, Lisenka E. L. M.; van Bokhoven, Hans; Jabs, Ethylin Wang; Collins, Francis S.; Pennacchio, Len A.; Manoli, Irini; Engle, Elizabeth C.
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Genetic determinants of switchgrass- root-associated microbiota in field sites spanning its natural range
err2023-05-01
err17
errOAAI
errEdwards, Joseph A.; Saran, Usha Bishnoi; Bonnette, Jason; MacQueen, Alice; Yin, Jun; Nguyen, Tu Uyen; Schmutz, Jeremy; Grimwood, Jane; Pennacchio, Len A.; Daum, Chris; del Rio, Tijana Glavina; Fritschi, Felix B.; Lowry, David B.; Juenger, Thomas E.
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Topologically associating domain boundaries are required for normal genome function
err2023-04-20
err31
errOAAI
errRajderkar, Sudha; Barozzi, Iros; Zhu, Yiwen; Hu, Rong; Zhang, Yanxiao; Li, Bin; Caro, Ana Alcaina; Fukuda-Yuzawa, Yoko; Kelman, Guy; Akeza, Adyam; Blow, Matthew J.; Pham, Quan; Harrington, Anne N.; Godoy, Janeth; Meky, Eman M.; von Maydell, Kianna; Hunter, Riana D.; Akiyama, Jennifer A.; Novak, Catherine S.; Plajzer-Frick, Ingrid; Afzal, Veena; Tran, Stella; Lopez-Rios, Javier; Talkowski, Michael E.; Lloyd, K. C. Kent; Ren, Bing; Dickel, Diane E.; Visel, Axel; Pennacchio, Len A.
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Insulin-mediated down-regulation of apolipoprotein A5 gene expression through the phosphatidylinositol 3-kinase pathway: Role of upstream stimulatory factor
err2023-03-27
err114
errOAAI
errNowak, M; Helleboid-Chapman, A; Jakel, H; Martin, G; Duran-Sandoval, D; Staels, B; Rubin, EM; Pennacchio, LA; Taskinen, MR; Fruchart-Najib, J; Fruchart, JC
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