Jue Ruan - Publications, H-index & Citations

Jue Ruan

Chinese Academy of Agricultural Sciences

43H指数

146论文数

8.8W被引数

收录论文 74

发表时间

Author Correction: Single-cell profiling decodes patagium development in gliding mammal 作者更正：单细胞分析解码滑翔哺乳动物翼膜发育

Nature Communications

IF15.7

2026-09-21

OAAI

YouFu Lin; ShuangXian Huang; LiFeng Che; HaoZhe Zhao; YaJun Wang; MingFei Yang; Cheng Ai; Jue Ruan; XiaoPing Wang; Li Yu

p-LoopF is associated with chromatin looping in large introns of Ginkgo biloba p-LoopF与银杏大内含子中的染色质环相关

Cell Research

IF25.9

2026-08-26

PREAI

Bing He; Jianyang Li; Wei Fan; Hailin Liu; Haohan Teng; Qiang Lin; Mengjia Bu; Shigang Wu; Ruonan Li; Siwei Xiong; Yuting Bai; Fuliang Cao; Li-An Xu; Wanfei Liu; Jue Ruan; Peng Cui

Single-cell profiling decodes patagium development in gliding mammal 单细胞分析解码滑翔哺乳动物翼膜发育

Nature Communications

IF15.7

2026-08-04

OAAI

YouFu Lin; ShuangXian Huang; LiFeng Che; HaoZhe Zhao; YaJun Wang; MingFei Yang; Cheng Ai; Jue Ruan; XiaoPing Wang; Li Yu

A dual context-aware basecaller for nanopore direct RNA sequencing 用于纳米孔直接RNA测序的双上下文感知basecaller

Nature Communications

IF15.7

2026-01-21

OAAI

Shaohui Xie; Lulu Ding; Yang Yu; Ling Liu; Yiwen Sun; Jianqiang Li; Jue Ruan; Zexuan Zhu

Mapping of quantitative trait loci for early seed germination using whole-genome resequencing chromosome segment substitution lines of aus Kasalath in the background of japonica Nipponbare 利用aus Kasalath的基因组重测序染色体片段替代系在粳稻Nipponbare背景下对早期种子萌发的数量性状位点进行作图

Frontiers in Plant Science

IF4.8

2025-10-20

OAAI

Siyao Shan; Muhan Ye; Jue Ruan; Sheng Teng; Min Yu

Bryophytes hold a larger gene family space than vascular plants 苔藓植物比维管植物拥有更大的基因家族空间。

Nature Genetics

IF0

2025-09-22

OAAI

Shanshan Dong; Sibo Wang; Linzhou Li; Jin Yu; Yongxia Zhang; Jia-Yu Xue; Hengchi Chen; Jianchao Ma; Yuying Zeng; Yuqing Cai; Wei Huang; Xuping Zhou; Jiayi Wu; Jianyou Li; Yifeng Yao; Ruoyang Hu; Tao Zhao; Juan Carlos Villarreal A; Leon Dirick; Li Liu; Michael Ignatov; Minghui Jin; Jue Ruan; Yikun He; Haifeng Wang; Bo Xu; Ricardo Rozzi; Jill Wegrzyn; Dennis William Stevenson; Karen S. Renzaglia; Hongfeng Chen; Li Zhang; Shouzhou Zhang; Roy Mackenzie; Javier E. Moreno; Michael Melkonian; Tong Wei; Ying Gu; Xun Xu; Stefan A. Rensing; Jinling Huang; Manyuan Long; Bernard Goffinet; John L. Bowman; Yves Van de Peer; Huan Liu; Yang Liu

Efficient data filtering with multiple group conditions: a command tool for bioinformatics data analysis 高效的多组条件数据筛选：一种生物信息学数据分析命令工具

ABIOTECH

IF5

2025-03-13

PREAI

Deng, WP; Chang, JY; Li, AL; Xie, H; Ruan, J

The gap-free assembly of pepper genome reveals transposable-element-driven expansion and rapid evolution of pericentromeres 辣椒基因组的无间隙组装揭示了转座子驱动的着丝粒周围区域扩张和快速进化

PLANT COMMUNICATIONS

IF11.6

2025-02-01

OAAI

Zhang, Kang; Wang, Xiang; Chen, Shumin; Liu, Yuanhang; Zhang, Lingkui; Yang, Xiaolong; Yu, Hailong; Cao, Yacong; Zhang, Lei; Cai, Chengcheng; Ruan, Jue; Wang, Lihao

Targeting conserved secreted effectors to control rice blast 靶向保守的分泌型效应蛋白以控制水稻稻瘟病

TRENDS IN PLANT SCIENCE

IF20.8

2025-01-01

PREAI

Zhang, Chongyang; Feng, Qin; Ruan, Jue; Wang, Guo-Liang; You, Xiaoman; Ning, Yuese

Chloroplast and whole-genome sequencing shed light on the evolutionary history and phenotypic diversification of peanuts

NATURE GENETICS

IF31.8

2024-08-13

OAAI

Zheng, Zheng; Sun, Ziqi; Qi, Feiyan; Fang, Yuanjin; Lin, Ke; Pavan, Stefano; Huang, Bingyan; Dong, Wenzhao; Du, Pei; Tian, Mengdi; Shi, Lei; Xu, Jing; Han, Suoyi; Liu, Hua; Qin, Li; Zhang, Zhongxin; Dai, Xiaodong; Miao, Lijuan; Zhao, Ruifang; Wang, Juan; Liao, Yanlin; Li, Alun; Ruan, Jue; Delvento, Chiara; Cigliano, Riccardo Aiese; Maliepaard, Chris; Bai, Yuling; Visser, Richard G. F.; Zhang, Xinyou

Low-input PacBio sequencing generates high-quality individual fly genomes and characterizes mutational processes 低输入PacBio测序产生高质量的个体蝇基因组并表征突变过程

NATURE COMMUNICATIONS

IF15.7

2024-07-05

OAAI

Jia, Hangxing; Tan, Shengjun; Cai, Yingao; Guo, Yanyan; Shen, Jieyu; Zhang, Yaqiong; Ma, Huijing; Zhang, Qingzhu; Chen, Jinfeng; Qiao, Gexia; Ruan, Jue; Zhang, Yong E.

HiTE: a fast and accurate dynamic boundary adjustment approach for full-length transposable element detection and annotation

NATURE COMMUNICATIONS

IF15.7

2024-07-02

OAAI

Hu, Kang; Ni, Peng; Xu, Minghua; Zou, You; Chang, Jianye; Gao, Xin; Li, Yaohang; Ruan, Jue; Hu, Bin; Wang, Jianxin

Overcoming the High Error Rate of Composite DNA Letters-Based Digital Storage through Soft-Decision Decoding 通过软判决解码克服基于复合DNA字母的数字存储的高错误率

ADVANCED SCIENCE

IF14.1

2024-06-14

OAAI

Xu, Yaping; Ding, Lulu; Wu, Shigang; Ruan, Jue

Anti-claudin 18.2 (CLDN18.2) antibody-drug conjugate (ADC) IBI343 in patients (pts) with solid tumors and gastric/ gastro-esophageal junction adenocarcinoma (G/GEJ AC): A phase study

ANNALS OF ONCOLOGY

IF65.4

2024-06-01

PREAI

Liu, J. J.; Yu, X.; Zhang, J.; Yang, J.; Yue, J.; Sun, Y.; Pan, Y.; Sun, M.; Qin, Y.; Shen, L.; Song, R.; Ruan, J.; Zhou, A.; Mou, Y.; Liu, Z.; Liu, Z.; Morris, M.; Aghmesheh, M.; Tazbirkova, A.; Zhou, H.

NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads NextDenovo: 一种有效的纠错和精确的组装工具，用于嘈杂的长读数

GENOME BIOLOGY

IF9.4

2024-04-26

OAAI

Hu, Jiang; Wang, Zhuo; Sun, Zongyi; Hu, Benxia; Ayoola, Adeola Oluwakemi; Liang, Fan; Li, Jingjing; Sandoval, Jose R.; Cooper, David N.; Ye, Kai; Ruan, Jue; Xiao, Chuan-Le; Wang, Depeng; Wu, Dong-Dong; Wang, Sheng

An effective strategy for assembling the sex-limited chromosome 组装性别限制染色体的有效策略

GIGASCIENCE

IF3.9

2024-04-16

OAAI

Wang, Xiao-Bo; Lu, Hong-Wei; Liu, Qing-You; Li, A-Lun; Zhou, Hong-Ling; Zhang, Yong; Zhu, Tian-Qi; Ruan, Jue

KSNP: a fast de Bruijn graph-based haplotyping tool approaching data-in time cost

NATURE COMMUNICATIONS

IF15.7

2024-04-11

OAAI

Zhou, Qian; Ji, Fahu; Lin, Dongxiao; Liu, Xianming; Zhu, Zexuan; Ruan, Jue

BSAlign: A Library for Nucleotide Sequence Alignment

GENOMICS PROTEOMICS & BIOINFORMATICS

IF7.9

2024-03-14

OAAI

Shao, Haojing; Ruan, Jue

The dynamic landscape of chromatin accessibility and active regulatory elements in the mediobasal hypothalamus influences the seasonal activation of the reproductive axis in the male quail under long light exposure

BMC GENOMICS

IF3.7

2024-02-19

OAAI

Chang, Jianye; Xu, Yanglong; Fu, Yuting; Liu, Jiaxin; Jiang, Danli; Pan, Jianqiu; Ouyang, Hongjia; Liu, Wenjun; Xu, Jin; Tian, Yunbo; Huang, Yunmao; Ruan, Jue; Shen, Xu

Recognition and Localization of Maize Leaf and Stalk Trajectories in RGB Images Based on Point-Line Net

PLANT PHENOMICS

IF6.4

2024-01-01

OAAI

Liu, Bingwen; Chang, Jianye; Hou, Dengfeng; Pan, Yuchen; Li, Dengao; Ruan, Jue

研究方向