未登录 Multiomic profiling of checkpoint inhibitor-treated melanoma: Identifying predictors of response and resistance, and markers of biological discordance (vol 40, pg 88, 2022) 多组学分析：检查点抑制剂治疗的黑色素瘤：识别应答和耐药的预测因子，以及生物学不一致性的标志物（卷40，页88，2022） Newell, Felicity; da Silva, Ines Pires; Johansson, Peter A.; Menzies, Alexander M.; Wilmott, James S.; Addala, Venkateswar; Carlino, Matteo S.; Rizos, Helen; Nones, Katia; Edwards, Jarem J.; Lakis, Vanessa; Kazakoff, Stephen H.; Mukhopadhyay, Pamela; Ferguson, Peter M.; Leonard, Conrad; Koufariotis, Lambros T.; Wood, Scott; Blank, Christian U.; Thompson, John F.; Spillane, Andrew J.; Saw, Robyn P. M.; Shannon, Kerwin F.; Pearson, John, V; Mann, Graham J.; Hayward, Nicholas K.; Scolyer, Richard A.; Waddell, Nicola; Long, Georgina, V 分享 收藏
Performance of somatic structural variant calling in lung cancer using Oxford Nanopore sequencing technology 使用牛津纳米孔测序技术在肺癌中体细胞结构变异调用的性能 Liu, Lingchen; Zhang, Jia; Wood, Scott; Newell, Felicity; Leonard, Conrad; Koufariotis, Lambros T.; Nones, Katia; Dalley, Andrew J.; Chittoory, Haarika; Bashirzadeh, Farzad; Son, Jung Hwa; Steinfort, Daniel; Williamson, Jonathan P.; Bint, Michael; Pahoff, Carl; Nguyen, Phan T.; Twaddell, Scott; Arnold, David; Grainge, Christopher; Simpson, Peter T.; Fielding, David; Waddell, Nicola; Pearson, John V. 分享 收藏
Discrepancies in tumor mutation burden reporting from sequential endobronchial ultrasound transbronchial needle aspiration samples within single lymph node stations - brief report Fielding, David; Dalley, Andrew J.; Singh, Mahendra; Nandakumar, Lakshmy; Lakis, Vanessa; Chittoory, Haarika; Fairbairn, David; Patch, Ann-Marie; Kazakoff, Stephen H.; Ferguson, Kaltin; Bashirzadeh, Farzad; Bint, Michael; Pahoff, Carl; Son, Jung Hwa; Ryan, Kimberley; Hodgson, Alan; Sharma, Sowmya; Pearson, John V.; Waddell, Nicola; Lakhani, Sunil R.; Hartel, Gunter; Simpson, Peter T.; Nones, Katia 分享 收藏
Multi-omic features of oesophageal adenocarcinoma in patients treated with preoperative neoadjuvant therapy Naeini, Marjan M.; Newell, Felicity; Aoude, Lauren G.; Bonazzi, Vanessa F.; Patel, Kalpana; Lampe, Guy; Koufariotis, Lambros T.; Lakis, Vanessa; Addala, Venkateswar; Kondrashova, Olga; Johnston, Rebecca L.; Sharma, Sowmya; Brosda, Sandra; Holmes, Oliver; Leonard, Conrad; Wood, Scott; Xu, Qinying; Thomas, Janine; Walpole, Euan; Mai, G. Tao; Ackland, Stephen P.; Martin, Jarad; Burge, Matthew; Finch, Robert; Karapetis, Christos S.; Shannon, Jenny; Nott, Louise; Bohmer, Robert; Wilson, Kate; Barnes, Elizabeth; Zalcberg, John R.; Smithers, B. Mark; Simes, John; Price, Timothy; Gebski, Val; Nones, Katia; Watson, David I.; Pearson, John V.; Barbour, Andrew P.; Waddell, Nicola 分享 收藏
Australian Genomics: Outcomes of a 5-year national program to accelerate the integration of genomics in healthcare 澳大利亚基因组学: 一项为期5年的国家计划的成果，以加速基因组学在医疗保健中的整合 Stark, Zornitza; Boughtwood, Tiffany; Haas, Matilda; Braithwaite, Jeffrey; Gaff, Clara L.; Goranitis, Ilias; Spurdle, Amanda B.; Hansen, David P.; Hofmann, Oliver; Laing, Nigel; Metcalfe, Sylvia; Newson, Ainsley J.; Scott, Hamish S.; Thorne, Natalie; Ward, Robyn L.; Dinger, Marcel E.; Best, Stephanie; Long, Janet C.; Grimmond, Sean M.; Pearson, John; Waddell, Nicola; Barnett, Christopher P.; Cook, Matthew; Field, Michael; Fielding, David; Fox, Stephen B.; Gecz, Jozef; Jaffe, Adam; Leventer, Richard J.; Lockhart, Paul J.; Lunke, Sebastian; Mallett, Andrew J.; McGaughran, Julie; Mileshkin, Linda; Nones, Katia; Roscioli, Tony; Scheffer, Ingrid E.; Semsarian, Christopher; Simons, Cas; Thomas, David M.; Thorburn, David R.; Tothill, Richard; White, Deborah; Dunwoodie, Sally; Simpson, Peter T.; Phillips, Peta; Brion, Marie-Jo; Finlay, Keri; Quinn, Michael CJ.; Mattiske, Tessa; Tudini, Emma; Boggs, Kirsten; Murray, Sean; Wells, Kathy; Cannings, John; Sinclair, Andrew H.; Christodoulou, John; North, Kathryn N. 分享 收藏
Shariant platform: Enabling evidence sharing across Australian clinical genetic-testing laboratories to support variant interpretation Shariant平台: 支持澳大利亚临床基因检测实验室之间的证据共享，以支持变异解释 Tudini, Emma; Andrews, James; Lawrence, David M.; King-Smith, Sarah L.; Baker, Naomi; Baxter, Leanne; Beilby, John; Bennetts, Bruce; Beshay, Victoria; Black, Michael; Boughtwood, Tiffany F.; Brion, Kristian; Cheong, Pak Leng; Christie, Michael; Christodoulou, John; Chong, Belinda; Cox, Kathy; Davis, Mark R.; Dejong, Lucas; Dinger, Marcel E.; Doig, Kenneth D.; Douglas, Evelyn; Dubowsky, Andrew; Ellul, Melissa; Fellowes, Andrew; Fisk, Katrina; Fortuno, Cristina; Friend, Kathryn; Gallagher, Renee L.; Gao, Song; Hackett, Emma; Hadler, Johanna; Hipwell, Michael; Ho, Gladys; Hollway, Georgina; Hooper, Amanda J.; Kassahn, Karin S.; Krishnaraj, Rahul; Lau, Chiyan; Huong Le; San Leong, Huei; Lundie, Ben; Lunke, Sebastian; Marty, Anthony; McPhillips, Mary; Nguyen, Lan T.; Nones, Katia; Palmer, Kristen; Pearson, John, V; Quinn, Michael C. J.; Rawlings, Lesley H.; Sadedin, Simon; Sanchez, Louisa; Schreiber, Andreas W.; Sigalas, Emanouil; Simsek, Aygul; Soubrier, Julien; Stark, Zornitza; Thompson, Bryony A.; James, U.; Vakulin, Cassandra G.; Wells, Amanda, V; Wise, Cheryl A.; Woods, Rick; Ziolkowski, Andrew; Brion, Marie-Jo; Scott, Hamish S.; Thorne, Natalie P.; Spurdle, Amanda B. 分享 收藏
Prospective Optimization of Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration Lymph Node Assessment for Lung Cancer: Three Needle Agitations Are Noninferior to 10 Agitations for Adequate Tumor Cell and DNA Yield Fielding, David; Dalley, Andrew J.; Singh, Mahendra; Nandakumar, Lakshmy; Nones, Katia; Lakis, Vanessa; Chittoory, Haarika; Ferguson, Kaltin; Bashirzadeh, Farzad; Bint, Michael; Pahoff, Carl; Son, Jung Hwa; Hodgson, Alan; Sharma, Sowmya; Godbolt, David; Coleman, Kylie; Whit, Lenore; Waddell, Nicola; Lakhani, Sunil R.; Hartel, Gunter; Simpson, Peter T. 分享 收藏
Comparative Genomics Provides Etiologic and Biological Insight into Melanoma Subtypes 比较基因组学提供了对黑色素瘤亚型的病因学和生物学见解 Newell, Felicity; Johansson, Peter A.; Wilmott, James S.; Nones, Katia; Lakis, Vanessa; Pritchard, Antonia L.; Lo, Serigne N.; Rawson, Robert, V; Kazakoff, Stephen H.; Colebatch, Andrew J.; Koufariotis, Lambros T.; Ferguson, Peter M.; Wood, Scott; Leonard, Conrad; Law, Matthew H.; Brooks, Kelly M.; Broit, Natasa; Palmer, Jane M.; Couts, Kasey L.; Vergara, Ismael A.; Long, Georgina, V; Barbour, Andrew P.; Nieweg, Omgo E.; Shivalingam, Brindha; Robinson, William A.; Stretch, Jonathan R.; Spillane, Andrew J.; Saw, Robyn P. M.; Shannon, Kerwin F.; Thompson, John F.; Mann, Graham J.; Pearson, John, V; Scolyer, Richard A.; Waddell, Nicola; Hayward, Nicholas K. 分享 收藏
Comparison of actionable events detected in cancer genomes by whole-genome sequencing, in silico whole-exome and mutation panels 全基因组测序、基于计算机的全外显子组测序及突变Panel在癌症基因组中检测到的可靶向事件比较 Ramarao-Milne, P.; Kondrashova, O.; Patch, A. -M.; Nones, K.; Koufariotis, L. T.; Newell, F.; Addala, V.; Lakis, V.; Holmes, O.; Leonard, C.; Wood, S.; Xu, Q.; Mukhopadhyay, P.; Naeini, M. M.; Steinfort, D.; Williamson, J. P.; Bint, M.; Pahoff, C.; Nguyen, P. T.; Twaddell, S.; Arnold, D.; Grainge, C.; Basirzadeh, F.; Fielding, D.; Dalley, A. J.; Chittoory, H.; Simpson, P. T.; Aoude, L. G.; Bonazzi, V. F.; Patel, K.; Barbour, A. P.; Fennell, D. A.; Robinson, B. W.; Creaney, J.; Hollway, G.; Pearson, J. V.; Waddell, N. 分享 收藏
Comprehensive genomic and tumour immune profiling reveals potential therapeutic targets in malignant pleural mesothelioma 全面的基因组和肿瘤免疫分析揭示了恶性胸膜间皮瘤的潜在治疗靶点 Creaney, Jenette; Patch, Ann-Marie; Addala, Venkateswar; Sneddon, Sophie A.; Nones, Katia; Dick, Ian M.; Lee, Y. C. Gary; Newell, Felicity; Rouse, Ebony J.; Naeini, Marjan M.; Kondrashova, Olga; Lakis, Vanessa; Nakas, Apostolos; Waller, David; Sharkey, Annabel; Mukhopadhyay, Pamela; Kazakoff, Stephen H.; Koufariotis, Lambros T.; Davidson, Aimee L.; Ramarao-Milne, Priya; Holmes, Oliver; Xu, Qinying; Leonard, Conrad; Wood, Scott; Grimmond, Sean M.; Bueno, Raphael; Fennell, Dean A.; Pearson, John, V; Robinson, Bruce W.; Waddell, Nicola 分享 收藏
Whole genome deep sequencing analysis of cell-free DNA in samples with low tumour content Ganesamoorthy, Devika; Robertson, Alan James; Chen, Wenhan; Hall, Michael B.; Cao, Minh Duc; Ferguson, Kaltin; Lakhani, Sunil R.; Nones, Katia; Simpson, Peter T.; Coin, Lachlan J. M. 分享 收藏
Patient-derived xenograft models capture genomic heterogeneity in endometrial cancer 患者来源的异种移植模型捕获了子宫内膜癌的基因组异质性 Bonazzi, Vanessa F.; Kondrashova, Olga; Smith, Deborah; Nones, Katia; Sengal, Asmerom T.; Ju, Robert; Packer, Leisl M.; Koufariotis, Lambros T.; Kazakoff, Stephen H.; Davidson, Aimee L.; Ramarao-Milne, Priya; Lakis, Vanessa; Newell, Felicity; Rogers, Rebecca; Davies, Claire; Nicklin, James; Garrett, Andrea; Chetty, Naven; Perrin, Lewis; Pearson, John, V; Patch, Ann-Marie; Waddell, Nicola; Pollock, Pamela M. 分享 收藏
Acquired RAD51C Promoter Methylation Loss Causes PARP Inhibitor Resistance in High-Grade Serous Ovarian Carcinoma Nesic, Ksenija; Kondrashova, Olga; Hurley, Rachel M.; McGehee, Cordelia D.; Vandenberg, Cassandra J.; Ho, Gwo-Yaw; Lieschke, Elizabeth; Dall, Genevieve; Bound, Nirashaa; Shield-Artin, Kristy; Radke, Marc; Musafer, Ashan; Chai, Zi Qing; Ghamsari, Mohammad Reza Eftekhariyan; Harrell, Maria, I; Kee, Damien; Olesen, Inger; McNally, Orla; Traficante, Nadia; DeFazio, Anna; Bowtell, David D. L.; Swisher, Elizabeth M.; Weroha, S. John; Nones, Katia; Waddell, Nicola; Kaufmann, Scott H.; Dobrovic, Alexander; Wakefield, Matthew J.; Scott, Clare L. 分享 收藏
DNA methylation patterns identify subgroups of pancreatic neuroendocrine tumors with clinical association DNA甲基化模式识别与临床相关的胰腺神经内分泌肿瘤亚组 Lakis, Vanessa; Lawlor, Rita T.; Newell, Felicity; Patch, Ann-Marie; Mafficini, Andrea; Sadanandam, Anguraj; Koufariotis, Lambros T.; Johnston, Rebecca L.; Leonard, Conrad; Wood, Scott; Rusev, Borislav; Corbo, Vincenzo; Luchini, Claudio; Cingarlini, Sara; Landoni, Luca; Salvia, Roberto; Milella, Michele; Chang, David; Bailey, Peter; Jamieson, Nigel B.; Duthie, Fraser; Gingras, Marie-Claude; Muzny, Donna M.; Wheeler, David A.; Gibbs, Richard A.; Milione, Massimo; Pederzoli, Paolo; Samra, Jaswinder S.; Gill, Anthony J.; Johns, Amber L.; Pearson, John, V; Biankin, Andrew, V; Grimmond, Sean M.; Waddell, Nicola; Nones, Katia; Scarpa, Aldo 分享 收藏
Verifying explainability of a deep learning tissue classifier trained on RNA-seq data Yap, Melvyn; Johnston, Rebecca L.; Foley, Helena; MacDonald, Samual; Kondrashova, Olga; Tran, Khoa A.; Nones, Katia; Koufariotis, Lambros T.; Bean, Cameron; Pearson, John, V; Trzaskowski, Maciej; Waddell, Nicola 分享 收藏
Pathogenic germline variants are associated with poor survival in stage III/IV melanoma patients Aoude, Lauren G.; Bonazzi, Vanessa F.; Brosda, Sandra; Patel, Kalpana; Koufariotis, Lambros T.; Oey, Harald; Nones, Katia; Wood, Scott; Pearson, John, V; Lonie, James M.; Arneil, Melissa; Atkinson, Victoria; Smithers, B. Mark; Waddell, Nicola; Barbour, Andrew P. 分享 收藏
Whole-genome sequencing of acral melanoma reveals genomic complexity and diversity Newell, Felicity; Wilmott, James S.; Johansson, Peter A.; Nones, Katia; Addala, Venkateswar; Mukhopadhyay, Pamela; Broit, Natasa; Amato, Carol M.; Van Gulick, Robert; Kazakoff, Stephen H.; Patch, Ann-Marie; Koufariotis, Lambros T.; Lakis, Vanessa; Leonard, Conrad; Wood, Scott; Holmes, Oliver; Xu, Qinying; Lewis, Karl; Medina, Theresa; Gonzalez, Rene; Saw, Robyn P. M.; Spillane, Andrew J.; Stretch, Jonathan R.; Rawson, Robert V.; Ferguson, Peter M.; Dodds, Tristan J.; Thompson, John F.; Long, Georgina V.; Levesque, Mitchell P.; Robinson, William A.; Pearson, John V.; Mann, Graham J.; Scolyer, Richard A.; Waddell, Nicola; Hayward, Nicholas K. 分享 收藏
Evaluation of next generation sequencing of DNA and RNA from archival formalin-fixed, paraffin-embedded pancreatic cancer tissue: A pilot study of the SEER-linked virtual tissue repository Yuan, Yao; Van Dyke, Alison; Petkov, Valentina; Tuan, Alyssa; Singhi, Aatur; Matrisian, Lynn; Rahib, Lola; Pearson, John; Nones, Katia; Waddell, Nicola; Zhao, Yongmei; Shen, Tsai-wei; Tran, Bao; Shetty, Jyoti; Gillanders, Elizabeth; Carrick, Danielle; Cress, Rosemary; Mueller, Lloyd; Hernandez, Brenda; Lynch, Charles; Tucker, Thomas; Wu, Xiao-Cheng; Penberthy, Lynne 分享 收藏
Using whole-genome sequencing data to derive the homologous recombination deficiency scores 使用全基因组测序数据得出同源重组缺陷评分 de Luca, Xavier M.; Newell, Felicity; Kazakoff, Stephen H.; Hartel, Gunter; Reed, Amy E. McCart; Holmes, Oliver; Xu, Qinying; Wood, Scott; Leonard, Conrad; Pearson, John, V; Lakhani, Sunil R.; Waddell, Nicola; Nones, Katia; Simpson, Peter T. 分享 收藏
Detection of actionable variants in various cancer types reveals value of whole-genome sequencing over in-silico whole-exome and hotspot panel sequencing Ramarao-Milne, K. P.; Patch, A-M; Nones, K.; Koufariotis, R.; Newell, F.; Addala, V. R.; Kondrashova, O.; Mukhopadhyay, P.; Kazakoff, S. H.; Lakis, V.; Holmes, O.; Leonard, C.; Wood, S.; Xu, C.; Pearson, J. V.; Hollway, G.; Waddell, N. 分享 收藏
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