arrow
返回

A masked generative graph representation learning framework empowering precise spatial domain identification

delete2026-05-22
delete0
delete
OA
AI
C
Chuyao Wang
T
Tongdong Zhang
H
Hang Sun
Z
Zhipeng Wu
S
Shuo Liang
X
Xueting Wang
M
Meirong Du
Y
Yanchun Liang
X
Xin Gao
Q
Qi Tang
D
Dong Xu
丰
丰小月 (Xiaoyue Feng) *
A
An Zeng *
R
Renchu Guan *
DOI:10.1093/bioinformatics/btag333delete
delete原文链接
delete原文求助
delete分享
delete收藏
摘要

摘要

En 中文
空间转录组学(ST)能够在保留组织空间背景的同时测量基因表达。然而,ST数据的稀疏性导致基因表达和空间信息利用不足,从而产生表征不佳的嵌入,并给下游分析带来挑战。
Keyword:
Spatial transcriptomics
Gene expression
Graph representation learning
Spatial domain identification
Data sparsity

期刊

Bioinformatics 封面图
Bioinformatics
IF:
5.4
论文数:
1.3K
被引数:
17.9W

机构

T
tongji university
学者数:
7.9W
论文数: 6.0W
被引数: 98
K
king abdullah university of science and technology
学者数:
1.7K
论文数: 630
被引数: 0
U
university of missouri
学者数:
1.3K
论文数: 620
被引数: 0
J
Jilin University
学者数:
8.7W
论文数: 5.6W
被引数: 8.9K
C
chinese academy of sciences
学者数:
56.7W
论文数: 45.0W
被引数: 704
学者 查看更多机构
引用论文

引用论文

Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex人背外侧前额叶皮层中转录组尺度的空间基因表达
err2021-02-08
err0
errOAAI
errKristen R. Maynard; Leonardo Collado-Torres; Lukas M. Weber; Cedric Uytingco; Brianna K. Barry; Stephen R. Williams; Joseph L. Catallini; Matthew N. Tran; Zachary Besich; Madhavi Tippani; Jennifer Chew; Yifeng Yin; Joel E. Kleinman; Thomas M. Hyde; Nikhil Rao; Stephanie C. Hicks; Keri Martinowich; Andrew E. Jaffe
err分享
err收藏
Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis空间和单细胞转录组数据的整合阐明了小鼠器官发生
err2021-09-06
err147
errOAAI
errLohoff, T.; Ghazanfar, S.; Missarova, A.; Koulena, N.; Pierson, N.; Griffiths, J. A.; Bardot, E. S.; Eng, C. -H. L.; Tyser, R. C. V.; Argelaguet, R.; Guibentif, C.; Srinivas, S.; Briscoe, J.; Simons, B. D.; Hadjantonakis, A. -K.; Gottgens, B.; Reik, W.; Nichols, J.; Cai, L.; Marioni, J. C.
err分享
err收藏
Integrated analysis of multimodal single-cell data多模态单细胞数据的集成分析
errCell
IF0
err2021-06-01
err0
errOAAI
errYuhan Hao; Stephanie Hao; Erica Andersen-Nissen; William M. Mauck; Shiwei Zheng; Andrew Butler; Maddie J. Lee; Aaron J. Wilk; Charlotte Darby; Michael Zager; Paul Hoffman; Marlon Stoeckius; Efthymia Papalexi; Eleni P. Mimitou; Jaison Jain; Avi Srivastava; Tim Stuart; Lamar M. Fleming; Bertrand Yeung; Angela J. Rogers; Juliana M. McElrath; Catherine A. Blish; Raphael Gottardo; Peter Smibert; Rahul Satija
err分享
err收藏
Spatially informed clustering, integration, and deconvolution of spatial transcriptomics with GraphST空间转录组学的空间信息聚类、整合和反卷积
err2023-03-01
err115
errOAAI
errLong, Yahui; Ang, Kok Siong; Li, Mengwei; Chong, Kian Long Kelvin; Sethi, Raman; Zhong, Chengwei; Xu, Hang; Ong, Zhiwei; Sachaphibulkij, Karishma; Chen, Ao; Zeng, Li; Fu, Huazhu; Wu, Min; Lim, Lina Hsiu Kim; Liu, Longqi; Chen, Jinmiao
err分享
err收藏
Cortical development: Layers of complexity
err1997-04-01
err48
errOAAI
errGilmore, EC; Herrup, K
err分享
err收藏
Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays使用DNA纳米球模式阵列的小鼠器官发生的时空转录组图谱
errCell
IF0
err2022-05-01
err0
errOAAI
errAo Chen; Sha Liao; Mengnan Cheng; Kailong Ma; Liang Wu; Yiwei Lai; Xiaojie Qiu; Jin Yang; Jiangshan Xu; Shijie Hao; Xin Wang; Huifang Lu; Xi Chen; Xing Liu; Xin Huang; Zhao Li; Yan Hong; Yujia Jiang; Jian Peng; Shuai Liu; Mengzhe Shen; Chuanyu Liu; Quanshui Li; Yue Yuan; Xiaoyu Wei; Huiwen Zheng; Weimin Feng; Zhifeng Wang; Yang Liu; Zhaohui Wang; Yunzhi Yang; Haitao Xiang; Lei Han; Baoming Qin; Pengcheng Guo; Guangyao Lai; Pura Muñoz-Cánoves; Patrick H. Maxwell; Jean Paul Thiery; Qing-Feng Wu; Fuxiang Zhao; Bichao Chen; Mei Li; Xi Dai; Shuai Wang; Haoyan Kuang; Junhou Hui; Liqun Wang; Ji-Feng Fei; Ou Wang; Xiaofeng Wei; Haorong Lu; Bo Wang; Shiping Liu; Ying Gu; Ming Ni; Wenwei Zhang; Feng Mu; Ye Yin; Huanming Yang; Michael Lisby; Richard J. Cornall; Jan Mulder; Mathias Uhlén; Miguel A. Esteban; Yuxiang Li; Longqi Liu; Xun Xu; Jian Wang
err分享
err收藏
Identifying multicellular spatiotemporal organization of cells with SpaceFlow
err2022-07-14
err56
errOAAI
errRen, Honglei; Walker, Benjamin L.; Cang, Zixuan; Nie, Qing
err分享
err收藏
学者 查看更多内容