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A unifying framework for interpreting and predicting mutualistic systems

delete2019-01-16
delete25
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OA
AI
F
Feilun Wu
A
Allison J. Lopatkin
D
Daniel Needs
C
Charlotte T. Lee
S
Sayan Mukherjee
L
Lingchong You *
DOI:10.1038/s41467-018-08188-5delete
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摘要

摘要

En 中文
Coarse-grained rules are widely used in chemistry, physics and engineering. In biology, however, such rules are less common and under-appreciated. This gap can be attributed to the difficulty in establishing general rules to encompass the immense diversity and complexity of biological systems. Furthermore, even when a rule is established, it is often challenging to map it to mechanistic details and to quantify these details. Here we report a framework that addresses these challenges for mutualistic systems. We first deduce a general rule that predicts the various outcomes of mutualistic systems, including coexistence and productivity. We further develop a standardized machine-learning-based calibration procedure to use the rule without the need to fully elucidate or characterize their mechanistic underpinnings. Our approach consistently provides explanatory and predictive power with various simulated and experimental mutualistic systems. Our strategy can pave the way for establishing and implementing other simple rules for biological systems.
Keyword:
CELL-SIZE
GENE-EXPRESSION
PLANT
EVOLUTION
COMPETITION
STABILITY
NETWORKS
DYNAMICS
ECOLOGY
MODELS
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期刊

Nature Communications 封面图
Nature Communications
IF:
15.7
论文数:
9.4W
被引数:
91.2W

机构

D
Duke University
学者数:
6.3W
论文数: 5.7W
被引数: 6.5W
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